BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAW3a11.yg.2.1
         (969 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CV261347.1|CV261347  WS02016.B21_I14 PTxN-IB-N-A-11 Popul...   168   3e-040
gb|DT525892.1|DT525892  WS02046.C21_J03 PTxN-IB-N-A-11 Popul...   168   3e-040
gb|DN484940.1|DN484940  K040P50.3pR Populus apical shoot cDN...   157   1e-036
gb|DT506751.1|DT506751  WS02416.BR_G17 PTxD-ICC-N-A-14 Popul...   109   2e-022
gb|DT511420.1|DT511420  WS02416.B21_G17 PTxD-ICC-N-A-14 Popu...   109   2e-022
gb|CV273146.1|CV273146  WS0171.B21_M24 PTxD-NR-A-8 Populus t...    72   4e-011
gb|DN490465.1|DN490465  UL50PC11.3pR Populus cold stressed l...    62   4e-008
gb|CV257130.1|CV257130  WS0245.B21_M05 PTxD-ICC-N-A-14 Popul...    50   2e-004
gb|DN500440.1|DN500440  UL50PC11.5pR Populus cold stressed l...    50   2e-004
gb|CV231822.1|CV231822  WS0195.B21_K18 PT-DX-N-A-10 Populus ...    46   0.002
gb|BI127989.1|BI127989  G069P39Y Populus cambium cDNA librar...    44   0.010
gb|BU812059.1|BU812059  UL91TG07 Populus leaf cDNA library P...    44   0.010
gb|CF232874.1|CF232874  PtaJXO0016G8G0814 Poplar cDNA librar...    44   0.010
gb|CK102216.1|CK102216  G069P39.5pR Populus tension wood cDN...    44   0.010
gb|CK318930.1|CK318930  X9P04h10 Populus stem seasonal libra...    44   0.010
gb|AJ778757.1|AJ778757  AJ778757 Populus euphratica cambium ...    44   0.010
gb|BU824298.1|BU824298  UB62BPE10 Populus tremula cambium cD...    42   0.039
gb|CF118925.1|CF118925  MTU10CS.P11.C02 Aspen stem cDNA Libr...    42   0.039
gb|CK088726.1|CK088726  A068P23.3pR Hybrid aspen plasmid lib...    42   0.039
gb|CV231975.1|CV231975  WS0196.B21_B22 PT-DX-N-A-10 Populus ...    42   0.039
gb|CX660230.1|CX660230  PO01019F01 Poplar SC cDNA library Po...    42   0.039
gb|AJ534481.1|AJ534481  AJ534481 Populus euphratica root and...    40   0.15 
gb|CA933471.1|CA933471  MTU5CS.P8.E06 Aspen stem cDNA Librar...    40   0.15 
gb|CX654661.1|CX654661  PO02057G05 Poplar SC cDNA library Po...    40   0.15 
>gb|CV261347.1|CV261347 WS02016.B21_I14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02016_I14 3', mRNA sequence
          Length = 742

 Score =  168 bits (85), Expect = 3e-040
 Identities = 250/305 (81%)
 Strand = Plus / Minus

                                                                       
Query: 241 tttgatctgagggagtggaagaagaaagatattactgggatctaccacaaatggcaaaat 300
           |||||||| | || |||||| ||||| |||||||| || || || ||||| |||||||| 
Sbjct: 734 tttgatcttaaggtgtggaaaaagaaggatattacaggaatatatcacaagtggcaaaac 675

                                                                       
Query: 301 atgaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttc 360
           ||||||||||||||||| || ||||||||||||||| | || || || ||  | || || 
Sbjct: 674 atgaatgaagacagggtactgtggaagcttgggacattgcctccagggctgattacattt 615

                                                                       
Query: 361 tataagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaaccca 420
           |||||  |||| || || ||  | || ||||||||||| |||||||| || || || |||
Sbjct: 614 tataatctgacacatcctcttcagaaatcatggcatgtgcttggattgggttataatcca 555

                                                                       
Query: 421 agcattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaag 480
           ||||||||  | ||||| || || ||||| ||||| || || || || || |||||||||
Sbjct: 554 agcattgataggtcagaaattgaaaatgcagctgttgtccactataacggtaacatgaag 495

                                                                       
Query: 481 ccatggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtat 540
           |||||||||||| |||||||||| || || |||||||||||||||||||| |||||||||
Sbjct: 494 ccatggctggagttagcaatgactaaatatcgaccatattggaccaagtacatcaagtat 435

                
Query: 541 gatca 545
           |||||
Sbjct: 434 gatca 430
>gb|DT525892.1|DT525892 WS02046.C21_J03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02046_J03 3', mRNA sequence
          Length = 743

 Score =  168 bits (85), Expect = 3e-040
 Identities = 250/305 (81%)
 Strand = Plus / Minus

                                                                       
Query: 241 tttgatctgagggagtggaagaagaaagatattactgggatctaccacaaatggcaaaat 300
           |||||||| | || |||||| ||||| |||||||| || || || ||||| |||||||| 
Sbjct: 735 tttgatcttaaggtgtggaaaaagaaggatattacaggaatatatcacaagtggcaaaac 676

                                                                       
Query: 301 atgaatgaagacagggtcctttggaagcttgggacacttccgcctggcctcttgaccttc 360
           ||||||||||||||||| || ||||||||||||||| | || || || ||  | || || 
Sbjct: 675 atgaatgaagacagggtactgtggaagcttgggacattgcctccagggctgattacattt 616

                                                                       
Query: 361 tataagttgacgcacccactggacaagtcatggcatgttcttggattaggatacaaccca 420
           |||||  |||| || || ||  | || ||||||||||| |||||||| || || || |||
Sbjct: 615 tataatctgacacatcctcttcagaaatcatggcatgtgcttggattgggttataatcca 556

                                                                       
Query: 421 agcattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatgaag 480
           ||||||||  | ||||| || || ||||| ||||| || || || || || |||||||||
Sbjct: 555 agcattgataggtcagaaattgaaaatgcagctgttgtccactataacggtaacatgaag 496

                                                                       
Query: 481 ccatggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtat 540
           |||||||||||| |||||||||| || || |||||||||||||||||||| |||||||||
Sbjct: 495 ccatggctggagttagcaatgactaaatatcgaccatattggaccaagtacatcaagtat 436

                
Query: 541 gatca 545
           |||||
Sbjct: 435 gatca 431
>gb|DN484940.1|DN484940 K040P50.3pR Populus apical shoot cDNA library Populus tremula x
           Populus tremuloides cDNA clone K040P50 3', mRNA sequence
          Length = 731

 Score =  157 bits (79), Expect = 1e-036
 Identities = 265/326 (81%), Gaps = 2/326 (0%)
 Strand = Plus / Minus

                                                                       
Query: 220 tgggcttatgggatgaacatctttgatctgagggagtggaagaagaaagatattactggg 279
           ||||| ||||||||||| || |||||||| | || ||| ||  |||| |||||||| || 
Sbjct: 728 tgggcatatgggatgaatatttttgatcttaaggtgtgaaa--agaaggatattacagga 671

                                                                       
Query: 280 atctaccacaaatggcaaaatatgaatgaagacagggtcctttggaagcttgggacactt 339
           || || ||||| |||||||| ||||||||||||||||| || ||||||||||||||| | 
Sbjct: 670 atatatcacaagtggcaaaacatgaatgaagacagggtactgtggaagcttgggacattg 611

                                                                       
Query: 340 ccgcctggcctcttgaccttctataagttgacgcacccactggacaagtcatggcatgtt 399
           || || || ||  | || || |||||  |||| || || ||  | || ||||||||||| 
Sbjct: 610 cctccagggctgattacattttataatctgacacatcctcttcagaaatcatggcatgtg 551

                                                                       
Query: 400 cttggattaggatacaacccaagcattgaccgttcagagatagacaatgctgctgtggtt 459
           |||||||| || || || |||||| ||||  | ||||| || || ||||| ||||| || 
Sbjct: 550 cttggattgggttataatccaagcgttgatagatcagaaattgaaaatgcagctgttgtc 491

                                                                       
Query: 460 cattacaatgggaacatgaagccatggctggagctagcaatgaccaagtaccgaccatat 519
           || || || || ||||||||||||||||||||| |||||||||| || || |||||||||
Sbjct: 490 cactataacggtaacatgaagccatggctggagttagcaatgactaaatatcgaccatat 431

                                     
Query: 520 tggaccaagtatatcaagtatgatca 545
           ||||||||||| ||||||||||||||
Sbjct: 430 tggaccaagtacatcaagtatgatca 405
>gb|DT506751.1|DT506751 WS02416.BR_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02416_G17 5', mRNA sequence
          Length = 560

 Score =  109 bits (55), Expect = 2e-022
 Identities = 109/127 (85%)
 Strand = Plus / Plus

                                                                       
Query: 419 caagcattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatga 478
           ||||||||||  | ||||| || || ||||| ||||| || || || || || |||||||
Sbjct: 2   caagcattgataggtcagaaattgaaaatgcagctgttgtccactataacggtaacatga 61

                                                                       
Query: 479 agccatggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagt 538
           |||||||||||||| |||||||||| || || |||||||||||||||||||| |||||||
Sbjct: 62  agccatggctggagttagcaatgactaaatatcgaccatattggaccaagtacatcaagt 121

                  
Query: 539 atgatca 545
           |||||||
Sbjct: 122 atgatca 128
>gb|DT511420.1|DT511420 WS02416.B21_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02416_G17 3', mRNA sequence
          Length = 560

 Score =  109 bits (55), Expect = 2e-022
 Identities = 109/127 (85%)
 Strand = Plus / Minus

                                                                       
Query: 419 caagcattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaacatga 478
           ||||||||||  | ||||| || || ||||| ||||| || || || || || |||||||
Sbjct: 559 caagcattgataggtcagaaattgaaaatgcagctgttgtccactataacggtaacatga 500

                                                                       
Query: 479 agccatggctggagctagcaatgaccaagtaccgaccatattggaccaagtatatcaagt 538
           |||||||||||||| |||||||||| || || |||||||||||||||||||| |||||||
Sbjct: 499 agccatggctggagttagcaatgactaaatatcgaccatattggaccaagtacatcaagt 440

                  
Query: 539 atgatca 545
           |||||||
Sbjct: 439 atgatca 433
>gb|CV273146.1|CV273146 WS0171.B21_M24 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
           cDNA clone WS0171_M24 3', mRNA sequence
          Length = 482

 Score = 71.9 bits (36), Expect = 4e-011
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                               
Query: 494 tagcaatgaccaagtaccgaccatattggaccaagtatatcaagtatgatca 545
           |||||||||| || || |||||||||||||||||||| ||||||||||||||
Sbjct: 481 tagcaatgactaaatatcgaccatattggaccaagtacatcaagtatgatca 430
>gb|DN490465.1|DN490465 UL50PC11.3pR Populus cold stressed leaves cDNA library Populus
           tremula x Populus tremuloides cDNA clone UL50PC11 3',
           mRNA sequence
          Length = 416

 Score = 61.9 bits (31), Expect = 4e-008
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                              
Query: 511 cgaccatattggaccaagtatatcaagtatgatca 545
           |||||||||||||||||||| ||||||||||||||
Sbjct: 405 cgaccatattggaccaagtacatcaagtatgatca 371
>gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS0245_M05 3', mRNA sequence
          Length = 718

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggct 488
           ||||||||  ||||||||||||| |||||||| ||||||||
Sbjct: 338 gctgctgtcattcattacaatggaaacatgaaaccatggct 298
>gb|DN500440.1|DN500440 UL50PC11.5pR Populus cold stressed leaves cDNA library Populus
           tremula x Populus tremuloides cDNA clone UL50PC11 5',
           mRNA sequence
          Length = 479

 Score = 50.1 bits (25), Expect = 2e-004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 517 tattggaccaagtatatcaagtatgatca 545
           |||||||||||||| ||||||||||||||
Sbjct: 27  tattggaccaagtacatcaagtatgatca 55
>gb|CV231822.1|CV231822 WS0195.B21_K18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
           WS0195_K18 3', mRNA sequence
          Length = 740

 Score = 46.1 bits (23), Expect = 0.002
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 220 tgggcttatgggatgaacatctttgatctgagggagtggaaga 262
           ||||| ||||| ||||||||||||||| ||| ||| |||||||
Sbjct: 738 tgggcatatggaatgaacatctttgatttgaaggaatggaaga 696

 Score = 42.1 bits (21), Expect = 0.039
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 460 cattacaatgggaacatgaagccatggct 488
           ||||||||||| |||||||| ||||||||
Sbjct: 498 cattacaatggcaacatgaaaccatggct 470
>gb|BI127989.1|BI127989 G069P39Y Populus cambium cDNA library Populus tremula x Populus
           tremuloides cDNA, mRNA sequence
          Length = 505

 Score = 44.1 bits (22), Expect = 0.010
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 213 atgtggctgggcttatgggatgaacatctttgat 246
           ||||| |||||||||||| |||||||| ||||||
Sbjct: 314 atgtgcctgggcttatggaatgaacatatttgat 347
>gb|BU812059.1|BU812059 UL91TG07 Populus leaf cDNA library Populus tremula x Populus
           tremuloides cDNA 5 prime, mRNA sequence
          Length = 611

 Score = 44.1 bits (22), Expect = 0.010
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 213 atgtggctgggcttatgggatgaacatctttgat 246
           ||||| |||||||||||| |||||||| ||||||
Sbjct: 430 atgtgcctgggcttatggaatgaacatatttgat 463
>gb|CF232874.1|CF232874 PtaJXO0016G8G0814 Poplar cDNA library from young opposite xylem
           Populus alba x Populus tremula cDNA 5', mRNA sequence
          Length = 758

 Score = 44.1 bits (22), Expect = 0.010
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                 
Query: 436 gagatagacaatgctgctgtggttcattacaatgggaa 473
           |||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 574 gagatagagaatgcagctgtagttcactacaatgggaa 611
>gb|CK102216.1|CK102216 G069P39.5pR Populus tension wood cDNA library Populus tremula x
           Populus tremuloides cDNA clone G069P39 5', mRNA sequence
          Length = 568

 Score = 44.1 bits (22), Expect = 0.010
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 213 atgtggctgggcttatgggatgaacatctttgat 246
           ||||| |||||||||||| |||||||| ||||||
Sbjct: 314 atgtgcctgggcttatggaatgaacatatttgat 347
>gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal library Populus deltoides cDNA, mRNA
           sequence
          Length = 628

 Score = 44.1 bits (22), Expect = 0.010
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 213 atgtggctgggcttatgggatgaacatctttgat 246
           ||||| |||||||||||| |||||||| ||||||
Sbjct: 266 atgtgcctgggcttatggcatgaacatatttgat 299
>gb|AJ778757.1|AJ778757 AJ778757 Populus euphratica cambium 3-6 months Populus euphratica
           cDNA clone P0000600005G03F1, mRNA sequence
          Length = 435

 Score = 44.1 bits (22), Expect = 0.010
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 213 atgtggctgggcttatgggatgaacatctttgat 246
           ||||| |||||||||||| |||||||| ||||||
Sbjct: 355 atgtgcctgggcttatggcatgaacatatttgat 388
>gb|BU824298.1|BU824298 UB62BPE10 Populus tremula cambium cDNA library Populus tremula cDNA
           5 prime, mRNA sequence
          Length = 429

 Score = 42.1 bits (21), Expect = 0.039
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 444 caatgctgctgtggttcattacaatgggaacatgaagccatggct 488
           ||||||||||||  ||||||| ||||| |||||||| || |||||
Sbjct: 182 caatgctgctgtcattcattataatggaaacatgaaaccttggct 226
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 786

 Score = 42.1 bits (21), Expect = 0.039
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 949 agtacctgcccgggcggccgc 969
           |||||||||||||||||||||
Sbjct: 657 agtacctgcccgggcggccgc 637

 Score = 40.1 bits (20), Expect = 0.15
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 950 gtacctgcccgggcggccgc 969
           ||||||||||||||||||||
Sbjct: 625 gtacctgcccgggcggccgc 644
>gb|CK088726.1|CK088726 A068P23.3pR Hybrid aspen plasmid library Populus tremula x Populus
           tremuloides cDNA clone A068P23 3', mRNA sequence
          Length = 684

 Score = 42.1 bits (21), Expect = 0.039
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 444 caatgctgctgtggttcattacaatgggaacatgaagccatggct 488
           ||||||||||||  ||||||| ||||| |||||||| || |||||
Sbjct: 390 caatgctgctgtcattcattataatggaaacatgaaaccttggct 346
>gb|CV231975.1|CV231975 WS0196.B21_B22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
           WS0196_B22 3', mRNA sequence
          Length = 377

 Score = 42.1 bits (21), Expect = 0.039
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggct 488
           ||||||||  ||||||||||||| |||||||| || |||||
Sbjct: 339 gctgctgtcattcattacaatggaaacatgaaaccttggct 299
>gb|CX660230.1|CX660230 PO01019F01 Poplar SC cDNA library Populus alba x Populus tremula
           var. glandulosa cDNA clone PO01019F01 5', mRNA sequence
          Length = 636

 Score = 42.1 bits (21), Expect = 0.039
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 382 gacaagtcatggcatgttcttggattaggatacaacccaagcatt 426
           ||||||||||||||||| || ||| | || || ||||||||||||
Sbjct: 165 gacaagtcatggcatgtcctgggacttgggtataacccaagcatt 209
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
           clone 46, mRNA sequence
          Length = 574

 Score = 40.1 bits (20), Expect = 0.15
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 950 gtacctgcccgggcggccgc 969
           ||||||||||||||||||||
Sbjct: 479 gtacctgcccgggcggccgc 498
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 606

 Score = 40.1 bits (20), Expect = 0.15
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 950 gtacctgcccgggcggccgc 969
           ||||||||||||||||||||
Sbjct: 289 gtacctgcccgggcggccgc 270
>gb|CX654661.1|CX654661 PO02057G05 Poplar SC cDNA library Populus alba x Populus tremula
           var. glandulosa cDNA clone PO02057G05 5', mRNA sequence
          Length = 368

 Score = 40.1 bits (20), Expect = 0.15
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 383 acaagtcatggcatgttcttggattaggatacaacccaagcatt 426
           |||||||||||||||| || ||| | || || ||||||||||||
Sbjct: 143 acaagtcatggcatgtcctgggacttgggtataacccaagcatt 186
  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 104,146
Number of Sequences: 369679
Number of extensions: 104146
Number of successful extensions: 29076
Number of sequences better than  0.5: 24
Number of HSP's better than  0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29044
Number of HSP's gapped (non-prelim): 31
length of query: 969
length of database: 203,408,664
effective HSP length: 19
effective length of query: 950
effective length of database: 196,384,763
effective search space: 186565524850
effective search space used: 186565524850
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)