BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAR2a06.yg.3.1
(612 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ773668.1|AJ773668 AJ773668 Populus euphratica shoot 3-... 36 1.5
gb|AJ773669.1|AJ773669 AJ773669 Populus euphratica shoot 3-... 36 1.5
gb|AJ776700.1|AJ776700 AJ776700 Populus euphratica root 3-6... 36 1.5
gb|DT520685.1|DT520685 WS02448.B21_E01 PTxD-ICC-N-A-14 Popu... 36 1.5
gb|BU822763.1|BU822763 UB43DPB01 Populus tremula cambium cD... 34 5.9
gb|BU894467.1|BU894467 X009F12 Populus wood cDNA library Po... 34 5.9
gb|BU896373.1|BU896373 X039G01 Populus wood cDNA library Po... 34 5.9
gb|CF229442.1|CF229442 PtaXM0025E12E1210 Poplar cDNA librar... 34 5.9
gb|CK089283.1|CK089283 B007P47.3pR Hybrid aspen plasmid lib... 34 5.9
gb|CK096126.1|CK096126 UA45BPF08.3pR Populus dormant cambiu... 34 5.9
gb|CK107003.1|CK107003 UB43DPB01.5pR Populus active cambium... 34 5.9
gb|CV263752.1|CV263752 WS02022.B21_L02 PTxN-IB-N-A-11 Popul... 34 5.9
gb|CV271594.1|CV271594 WS0155.B21_C05 PTxN-IB-A-6 Populus t... 34 5.9
gb|CX175989.1|CX175989 D01_69-94_07.ab1 leaf inoculated wit... 34 5.9
gb|CX660171.1|CX660171 PO01018H03 Poplar SC cDNA library Po... 34 5.9
gb|DT525760.1|DT525760 WS02046.C21_D13 PTxN-IB-N-A-11 Popul... 34 5.9
>gb|AJ773668.1|AJ773668 AJ773668 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300004C05F1, mRNA sequence
Length = 611
Score = 36.2 bits (18), Expect = 1.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 29 tactcgatgaagccatcg 46
||||||||||||||||||
Sbjct: 44 tactcgatgaagccatcg 27
>gb|AJ773669.1|AJ773669 AJ773669 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300004C05F2, mRNA sequence
Length = 585
Score = 36.2 bits (18), Expect = 1.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 29 tactcgatgaagccatcg 46
||||||||||||||||||
Sbjct: 72 tactcgatgaagccatcg 55
>gb|AJ776700.1|AJ776700 AJ776700 Populus euphratica root 3-6 months Populus euphratica
cDNA clone P0000400017C07F1, mRNA sequence
Length = 289
Score = 36.2 bits (18), Expect = 1.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 29 tactcgatgaagccatcg 46
||||||||||||||||||
Sbjct: 73 tactcgatgaagccatcg 56
>gb|DT520685.1|DT520685 WS02448.B21_E01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_E01 3', mRNA sequence
Length = 925
Score = 36.2 bits (18), Expect = 1.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 580 cagaccattacaaatatg 597
||||||||||||||||||
Sbjct: 75 cagaccattacaaatatg 92
>gb|BU822763.1|BU822763 UB43DPB01 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 220
Score = 34.2 bits (17), Expect = 5.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 244 gttctgcagctccatca 260
|||||||||||||||||
Sbjct: 205 gttctgcagctccatca 189
>gb|BU894467.1|BU894467 X009F12 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 741
Score = 34.2 bits (17), Expect = 5.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 436 ctcttggacgatatttt 452
|||||||||||||||||
Sbjct: 227 ctcttggacgatatttt 243
>gb|BU896373.1|BU896373 X039G01 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 595
Score = 34.2 bits (17), Expect = 5.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 436 ctcttggacgatatttt 452
|||||||||||||||||
Sbjct: 219 ctcttggacgatatttt 235
>gb|CF229442.1|CF229442 PtaXM0025E12E1210 Poplar cDNA library from mature xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 747
Score = 34.2 bits (17), Expect = 5.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 209 agaaggtactgcaactt 225
|||||||||||||||||
Sbjct: 570 agaaggtactgcaactt 586
>gb|CK089283.1|CK089283 B007P47.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B007P47 3', mRNA sequence
Length = 683
Score = 34.2 bits (17), Expect = 5.9
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 545 tgaaatttgctctagagaaga 565
||||||||||||||| |||||
Sbjct: 415 tgaaatttgctctagggaaga 395
>gb|CK096126.1|CK096126 UA45BPF08.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA45BPF08 3', mRNA sequence
Length = 726
Score = 34.2 bits (17), Expect = 5.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 209 agaaggtactgcaactt 225
|||||||||||||||||
Sbjct: 147 agaaggtactgcaactt 131
>gb|CK107003.1|CK107003 UB43DPB01.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB43DPB01 5', mRNA sequence
Length = 430
Score = 34.2 bits (17), Expect = 5.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 244 gttctgcagctccatca 260
|||||||||||||||||
Sbjct: 167 gttctgcagctccatca 151
>gb|CV263752.1|CV263752 WS02022.B21_L02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_L02 3', mRNA sequence
Length = 766
Score = 34.2 bits (17), Expect = 5.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 436 ctcttggacgatatttt 452
|||||||||||||||||
Sbjct: 465 ctcttggacgatatttt 449
>gb|CV271594.1|CV271594 WS0155.B21_C05 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0155_C05 3', mRNA sequence
Length = 936
Score = 34.2 bits (17), Expect = 5.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 209 agaaggtactgcaactt 225
|||||||||||||||||
Sbjct: 357 agaaggtactgcaactt 341
>gb|CX175989.1|CX175989 D01_69-94_07.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 643
Score = 34.2 bits (17), Expect = 5.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 436 ctcttggacgatatttt 452
|||||||||||||||||
Sbjct: 483 ctcttggacgatatttt 467
>gb|CX660171.1|CX660171 PO01018H03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01018H03 5', mRNA sequence
Length = 648
Score = 34.2 bits (17), Expect = 5.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 436 ctcttggacgatatttt 452
|||||||||||||||||
Sbjct: 198 ctcttggacgatatttt 214
>gb|DT525760.1|DT525760 WS02046.C21_D13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_D13 3', mRNA sequence
Length = 880
Score = 34.2 bits (17), Expect = 5.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 164 caaagtattacatccat 180
|||||||||||||||||
Sbjct: 93 caaagtattacatccat 109
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 58,392
Number of Sequences: 369679
Number of extensions: 58392
Number of successful extensions: 15754
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15737
Number of HSP's gapped (non-prelim): 17
length of query: 612
length of database: 203,408,664
effective HSP length: 19
effective length of query: 593
effective length of database: 196,384,763
effective search space: 116456164459
effective search space used: 116456164459
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)