BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAR1e04.yg.2.1
(405 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF232187.1|CF232187 PtaJXO0007D8D0808 Poplar cDNA librar... 62 2e-008
gb|BU883577.1|BU883577 UM93TD10 Populus flower cDNA library... 60 7e-008
gb|CV228763.1|CV228763 WS01911.B21_C15 PT-DX-N-A-10 Populus... 60 7e-008
gb|CV226588.1|CV226588 WS0164.B21_L12 PT-DX-A-7 Populus tri... 58 3e-007
gb|CV231087.1|CV231087 WS0193.B21_I04 PT-DX-N-A-10 Populus ... 58 3e-007
gb|CK096807.1|CK096807 UB27CPE12.3pR Populus active cambium... 56 1e-006
gb|CX169905.1|CX169905 A08_69-110_02.ab1 leaf inoculated wi... 56 1e-006
gb|CX176697.1|CX176697 F07_69-71_11.ab1 leaf inoculated wit... 56 1e-006
gb|BI127767.1|BI127767 G065P65Y Populus cambium cDNA librar... 52 2e-005
gb|CK092000.1|CK092000 G061P53.3pR Populus tension wood cDN... 52 2e-005
gb|CK102814.1|CK102814 G092P55.5pR Populus tension wood cDN... 52 2e-005
gb|CV225686.1|CV225686 WS0162.B21_B21 PT-DX-A-7 Populus tri... 52 2e-005
gb|CV228179.1|CV228179 WS0191.B21_F05 PT-DX-N-A-10 Populus ... 52 2e-005
gb|CV230255.1|CV230255 WS01915.B21_O16 PT-DX-N-A-10 Populus... 52 2e-005
gb|CV231593.1|CV231593 WS0194.B21_P24 PT-DX-N-A-10 Populus ... 52 2e-005
gb|CV231696.1|CV231696 WS0195.B21_E23 PT-DX-N-A-10 Populus ... 52 2e-005
gb|CV252296.1|CV252296 PX0011.B21_D12 PT-X-FL-A-1 Populus t... 52 2e-005
gb|CV252346.1|CV252346 PX0011.B21_G09 PT-X-FL-A-1 Populus t... 52 2e-005
gb|CV275201.1|CV275201 WS0175.B21_L08 PTxD-NR-A-8 Populus t... 52 2e-005
gb|DT469980.1|DT469980 WS01919.C21_I04 PT-DX-N-A-10 Populus... 52 2e-005
emb|Y13772.1|PTY13772 Populus trichocarpa mRNA for laccase,... 52 2e-005
emb|Y18219.1|PTR18219 Populus trichocarpa GLac90 gene 52 2e-005
gb|CF235271.1|CF235271 PtaJXT0020G7G0713 Poplar cDNA librar... 48 3e-004
gb|CV227702.1|CV227702 WS0167.B21_P11 PT-DX-A-7 Populus tri... 48 3e-004
gb|BI129564.1|BI129564 G092P55Y Populus cambium cDNA librar... 44 0.004
gb|CF216210.1|CF216210 PT1024 Hybrid aspen xylem up-regulat... 44 0.004
gb|CF227947.1|CF227947 PtaXM0006G8G0814 Poplar cDNA library... 42 0.016
gb|CF233813.1|CF233813 PtaJXO0027H6H0616 Poplar cDNA librar... 42 0.016
gb|CV228408.1|CV228408 WS0191.B21_P23 PT-DX-N-A-10 Populus ... 42 0.016
gb|BI131202.1|BI131202 G116P95Y Populus cambium cDNA librar... 40 0.063
gb|CN550117.1|CN550117 GQ0241.B3_L15 GQ024 Populus trichoca... 38 0.25
>gb|CF232187.1|CF232187 PtaJXO0007D8D0808 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 485
Score = 61.9 bits (31), Expect = 2e-008
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 136 aacggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgc 195
||||| ||||||||||| || ||||| || || ||||| || | ||| ||||| |||
Sbjct: 90 aacggatgggcggtcattcgattcgtcgcagacaatccaggtgtatggctaatgcattgc 149
Query: 196 cacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
|||||||| || ||||||||||||||||| |||| ||| ||| ||||
Sbjct: 150 cacctggatgtccacatcacctggggtcttgccacggctttcttggt 196
>gb|BU883577.1|BU883577 UM93TD10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 599
Score = 60.0 bits (30), Expect = 7e-008
Identities = 77/94 (81%)
Strand = Plus / Plus
Query: 136 aacggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgc 195
||||| ||||||||||| || ||||| || || ||||| || | ||| ||||| |||
Sbjct: 259 aacggatgggcggtcattcgattcgtcgcagacaatccaggtgtttggctaatgcattgc 318
Query: 196 cacctggacgtgcacatcacctggggtctcgcca 229
|||||||| || ||||||||||||||||| ||||
Sbjct: 319 cacctggatgtccacatcacctggggtcttgcca 352
>gb|CV228763.1|CV228763 WS01911.B21_C15 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_C15 3', mRNA sequence
Length = 758
Score = 60.0 bits (30), Expect = 7e-008
Identities = 77/94 (81%)
Strand = Plus / Minus
Query: 136 aacggctgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgc 195
||||| ||||||||||| || ||||| || || ||||| || | ||| ||||| |||
Sbjct: 401 aacggatgggcggtcattcgattcgtcgcagacaatccaggtgtatggctaatgcattgc 342
Query: 196 cacctggacgtgcacatcacctggggtctcgcca 229
|||||||| || ||||||||||||||||| ||||
Sbjct: 341 cacctggatgtccacatcacctggggtcttgcca 308
>gb|CV226588.1|CV226588 WS0164.B21_L12 PT-DX-A-7 Populus trichocarpa cDNA clone WS0164_L12
3', mRNA sequence
Length = 521
Score = 58.0 bits (29), Expect = 3e-007
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 142 tgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgccacctg 201
||||||||||| || ||||| || || ||||| || | ||| ||||| |||||||||
Sbjct: 389 tgggcggtcattcgattcgtcgcagacaatccaggtgtatggctaatgcattgccacctg 330
Query: 202 gacgtgcacatcacctggggtctcgccatggcgttcctggt 242
|| || ||||||||||||||||| |||| ||| ||| ||||
Sbjct: 329 gatgtccacatcacctggggtcttgccacggctttcttggt 289
>gb|CV231087.1|CV231087 WS0193.B21_I04 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_I04 3', mRNA sequence
Length = 685
Score = 58.0 bits (29), Expect = 3e-007
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 142 tgggcggtcatccgcttcgtggcggataatcccggggnnnngctcatgcactgccacctg 201
||||||||||| || ||||| || || ||||| || | ||| ||||| |||||||||
Sbjct: 369 tgggcggtcattcgattcgtcgcagacaatccaggtgtatggctaatgcattgccacctg 310
Query: 202 gacgtgcacatcacctggggtctcgccatggcgttcctggt 242
|| || ||||||||||||||||| |||| ||| ||| ||||
Sbjct: 309 gatgtccacatcacctggggtcttgccacggctttcttggt 269
>gb|CK096807.1|CK096807 UB27CPE12.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB27CPE12 3', mRNA sequence
Length = 351
Score = 56.0 bits (28), Expect = 1e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
||||| ||||||||||| || ||||||||||||||||| |||| ||| ||| ||||
Sbjct: 251 atgcattgccacctggatgtccacatcacctggggtcttgccacggctttcttggt 196
>gb|CX169905.1|CX169905 A08_69-110_02.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 650
Score = 56.0 bits (28), Expect = 1e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
||||| ||||||||||| || ||||||||||||||||| |||| ||| ||| ||||
Sbjct: 368 atgcattgccacctggatgtccacatcacctggggtcttgccacggctttcttggt 313
>gb|CX176697.1|CX176697 F07_69-71_11.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 691
Score = 56.0 bits (28), Expect = 1e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
||||| ||||||||||| || ||||||||||||||||| |||| ||| ||| ||||
Sbjct: 351 atgcattgccacctggatgtccacatcacctggggtcttgccacggctttcttggt 296
>gb|BI127767.1|BI127767 G065P65Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 396
Score = 52.0 bits (26), Expect = 2e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgtt 236
|||||||| ||| |||| || |||||||| |||||||| |||||||||||
Sbjct: 66 atgcactgtcacttggatgttcacatcacatggggtctggccatggcgtt 115
>gb|CK092000.1|CK092000 G061P53.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G061P53 3', mRNA sequence
Length = 641
Score = 52.0 bits (26), Expect = 2e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgtt 236
|||||||| ||| |||| || |||||||| |||||||| |||||||||||
Sbjct: 325 atgcactgtcacttggatgttcacatcacatggggtctggccatggcgtt 276
Score = 40.1 bits (20), Expect = 0.063
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgc 44
||||| || ||||| ||||| || ||||||||||||||| ||||
Sbjct: 511 aaccatccgatccatctccatggatacgacttctacatcatcgc 468
>gb|CK102814.1|CK102814 G092P55.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G092P55 5', mRNA sequence
Length = 430
Score = 52.0 bits (26), Expect = 2e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgtt 236
|||||||| ||| |||| || |||||||| |||||||| |||||||||||
Sbjct: 66 atgcactgtcacttggatgttcacatcacatggggtctggccatggcgtt 115
>gb|CV225686.1|CV225686 WS0162.B21_B21 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_B21
3', mRNA sequence
Length = 420
Score = 52.0 bits (26), Expect = 2e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgtt 236
|||||||| ||| |||| || |||||||| |||||||| |||||||||||
Sbjct: 419 atgcactgtcacttggatgttcacatcacatggggtctggccatggcgtt 370
>gb|CV228179.1|CV228179 WS0191.B21_F05 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0191_F05 3', mRNA sequence
Length = 899
Score = 52.0 bits (26), Expect = 2e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgtt 236
|||||||| ||| |||| || |||||||| |||||||| |||||||||||
Sbjct: 425 atgcactgtcacttggatgttcacatcacatggggtctggccatggcgtt 376
Score = 40.1 bits (20), Expect = 0.063
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgc 44
||||| || ||||| ||||| || ||||||||||||||| ||||
Sbjct: 611 aaccatccgatccatctccatggatacgacttctacatcatcgc 568
>gb|CV230255.1|CV230255 WS01915.B21_O16 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01915_O16 3', mRNA sequence
Length = 437
Score = 52.0 bits (26), Expect = 2e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgtt 236
|||||||| ||| |||| || |||||||| |||||||| |||||||||||
Sbjct: 420 atgcactgtcacttggatgttcacatcacatggggtctggccatggcgtt 371
>gb|CV231593.1|CV231593 WS0194.B21_P24 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0194_P24 3', mRNA sequence
Length = 730
Score = 52.0 bits (26), Expect = 2e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgtt 236
|||||||| ||| |||| || |||||||| |||||||| |||||||||||
Sbjct: 431 atgcactgtcacttggatgttcacatcacatggggtctggccatggcgtt 382
Score = 40.1 bits (20), Expect = 0.063
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgc 44
||||| || ||||| ||||| || ||||||||||||||| ||||
Sbjct: 617 aaccatccgatccatctccatggatacgacttctacatcatcgc 574
>gb|CV231696.1|CV231696 WS0195.B21_E23 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_E23 3', mRNA sequence
Length = 673
Score = 52.0 bits (26), Expect = 2e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgtt 236
|||||||| ||| |||| || |||||||| |||||||| |||||||||||
Sbjct: 347 atgcactgtcacttggatgttcacatcacatggggtctggccatggcgtt 298
Score = 40.1 bits (20), Expect = 0.063
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgc 44
||||| || ||||| ||||| || ||||||||||||||| ||||
Sbjct: 533 aaccatccgatccatctccatggatacgacttctacatcatcgc 490
>gb|CV252296.1|CV252296 PX0011.B21_D12 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_D12 3', mRNA sequence
Length = 613
Score = 52.0 bits (26), Expect = 2e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgtt 236
|||||||| ||| |||| || |||||||| |||||||| |||||||||||
Sbjct: 422 atgcactgtcacttggatgttcacatcacatggggtctggccatggcgtt 373
Score = 40.1 bits (20), Expect = 0.063
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgc 44
||||| || ||||| ||||| || ||||||||||||||| ||||
Sbjct: 608 aaccatccgatccatctccatggatacgacttctacatcatcgc 565
>gb|CV252346.1|CV252346 PX0011.B21_G09 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_G09 3', mRNA sequence
Length = 572
Score = 52.0 bits (26), Expect = 2e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgtt 236
|||||||| ||| |||| || |||||||| |||||||| |||||||||||
Sbjct: 422 atgcactgtcacttggatgttcacatcacatggggtctggccatggcgtt 373
>gb|CV275201.1|CV275201 WS0175.B21_L08 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0175_L08 3', mRNA sequence
Length = 759
Score = 52.0 bits (26), Expect = 2e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgtt 236
|||||||| ||| |||| || |||||||| |||||||| |||||||||||
Sbjct: 432 atgcactgtcacttggatgttcacatcacatggggtctggccatggcgtt 383
Score = 40.1 bits (20), Expect = 0.063
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgc 44
||||| || ||||| ||||| || ||||||||||||||| ||||
Sbjct: 618 aaccatccgatccatctccatggatacgacttctacatcatcgc 575
>gb|DT469980.1|DT469980 WS01919.C21_I04 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_I04 3', mRNA sequence
Length = 624
Score = 52.0 bits (26), Expect = 2e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgtt 236
|||||||| ||| |||| || |||||||| |||||||| |||||||||||
Sbjct: 425 atgcactgtcacttggatgttcacatcacatggggtctggccatggcgtt 376
Score = 40.1 bits (20), Expect = 0.063
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgc 44
||||| || ||||| ||||| || ||||||||||||||| ||||
Sbjct: 611 aaccatccgatccatctccatggatacgacttctacatcatcgc 568
>emb|Y13772.1|PTY13772 Populus trichocarpa mRNA for laccase, lac90 gene
Length = 2080
Score = 52.0 bits (26), Expect = 2e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgtt 236
|||||||| ||| |||| || |||||||| |||||||| |||||||||||
Sbjct: 1655 atgcactgtcacttggatgttcacatcacatggggtctggccatggcgtt 1704
Score = 40.1 bits (20), Expect = 0.063
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgc 44
||||| || ||||| ||||| || ||||||||||||||| ||||
Sbjct: 1469 aaccatccgatccatctccatggatacgacttctacatcatcgc 1512
>emb|Y18219.1|PTR18219 Populus trichocarpa GLac90 gene
Length = 2767
Score = 52.0 bits (26), Expect = 2e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgtt 236
|||||||| ||| |||| || |||||||| |||||||| |||||||||||
Sbjct: 2471 atgcactgtcacttggatgttcacatcacatggggtctggccatggcgtt 2520
Score = 40.1 bits (20), Expect = 0.063
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgc 44
||||| || ||||| ||||| || ||||||||||||||| ||||
Sbjct: 2197 aaccatccgatccatctccatggatacgacttctacatcatcgc 2240
>gb|CF235271.1|CF235271 PtaJXT0020G7G0713 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 755
Score = 48.1 bits (24), Expect = 3e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
||||| |||||| |||| || ||||||||||||||||| |||| ||| ||| ||||
Sbjct: 546 atgcattgccacttggatgttcacatcacctggggtcttgccacggctttcttggt 601
>gb|CV227702.1|CV227702 WS0167.B21_P11 PT-DX-A-7 Populus trichocarpa cDNA clone WS0167_P11
3', mRNA sequence
Length = 924
Score = 48.1 bits (24), Expect = 3e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctggt 242
||||| |||||| |||| || ||||||||||||||||| |||| ||| ||| ||||
Sbjct: 337 atgcattgccacttggatgttcacatcacctggggtcttgccacggctttcttggt 282
>gb|BI129564.1|BI129564 G092P55Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 386
Score = 44.1 bits (22), Expect = 0.004
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtctcgccatggcgtt 236
|||||||| ||| |||| || || ||||| |||||||| |||||||||||
Sbjct: 67 atgcactgtcacttggatgtccagatcacatggggtctggccatggcgtt 116
>gb|CF216210.1|CF216210 PT1024 Hybrid aspen xylem up-regulated Populus alba x Populus
tremula cDNA clone PT1024, mRNA sequence
Length = 204
Score = 44.1 bits (22), Expect = 0.004
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 187 atgcactgccacctggacgtgcacatcacctggggtct 224
||||| |||||| |||| || |||||||||||||||||
Sbjct: 106 atgcattgccacttggatgttcacatcacctggggtct 69
>gb|CF227947.1|CF227947 PtaXM0006G8G0814 Poplar cDNA library from mature xylem Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 342
Score = 42.1 bits (21), Expect = 0.016
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 208 cacatcacctggggtctcgccatggcgtt 236
|||||||| |||||||| |||||||||||
Sbjct: 10 cacatcacatggggtctggccatggcgtt 38
>gb|CF233813.1|CF233813 PtaJXO0027H6H0616 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 317
Score = 42.1 bits (21), Expect = 0.016
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 208 cacatcacctggggtctcgccatggcgtt 236
|||||||| |||||||| |||||||||||
Sbjct: 8 cacatcacatggggtctggccatggcgtt 36
>gb|CV228408.1|CV228408 WS0191.B21_P23 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0191_P23 3', mRNA sequence
Length = 415
Score = 42.1 bits (21), Expect = 0.016
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 208 cacatcacctggggtctcgccatggcgtt 236
|||||||| |||||||| |||||||||||
Sbjct: 406 cacatcacatggggtctggccatggcgtt 378
>gb|BI131202.1|BI131202 G116P95Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 446
Score = 40.1 bits (20), Expect = 0.063
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatcctcgc 44
||||| || ||||| ||||| || ||||||||||||||| ||||
Sbjct: 403 aaccatccgatccatctccatggatacgacttctacatcatcgc 446
>gb|CN550117.1|CN550117 GQ0241.B3_L15 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_L15 5', mRNA sequence
Length = 659
Score = 38.2 bits (19), Expect = 0.25
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 1 aaccaccccatccacctccacggctacgacttctacatc 39
|||||||| ||||| || || || |||||||||||||||
Sbjct: 50 aaccacccaatccatcttcatggatacgacttctacatc 88
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,607
Number of Sequences: 369679
Number of extensions: 19607
Number of successful extensions: 4930
Number of sequences better than 0.5: 31
Number of HSP's better than 0.5 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4882
Number of HSP's gapped (non-prelim): 48
length of query: 405
length of database: 203,408,664
effective HSP length: 18
effective length of query: 387
effective length of database: 196,754,442
effective search space: 76143969054
effective search space used: 76143969054
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)