BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAO3g02.yg.2.1
         (344 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AJ774010.1|AJ774010  AJ774010 Populus euphratica shoot 3-...    40   0.053
gb|DT472986.1|DT472986  WS01228.BR_D11 PT-GT-FL-A-3 Populus ...    40   0.053

>gb|AJ774010.1|AJ774010 AJ774010 Populus euphratica shoot 3-6 months Populus euphratica
           cDNA clone P0000300007F04F1, mRNA sequence
          Length = 477

 Score = 40.1 bits (20), Expect = 0.053
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  ctgaaagaaatggaagagca 101
           ||||||||||||||||||||
Sbjct: 280 ctgaaagaaatggaagagca 299



>gb|DT472986.1|DT472986 WS01228.BR_D11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
           WS01228_D11 5', mRNA sequence
          Length = 905

 Score = 40.1 bits (20), Expect = 0.053
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 82  ctgaaagaaatggaagagca 101
           ||||||||||||||||||||
Sbjct: 364 ctgaaagaaatggaagagca 383



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,541
Number of Sequences: 369679
Number of extensions: 21541
Number of successful extensions: 6206
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6204
Number of HSP's gapped (non-prelim): 2
length of query: 344
length of database: 203,408,664
effective HSP length: 18
effective length of query: 326
effective length of database: 196,754,442
effective search space: 64141948092
effective search space used: 64141948092
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)