BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH4a02.xg.2.1
(526 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF236877.1|CF236877 PtaJXT8C6C0606 Poplar cDNA library f... 42 0.021
gb|CK090799.1|CK090799 F025P61.3pR Populus flower cDNA libr... 42 0.021
gb|CN520211.1|CN520211 GQ0108.B3_D15 GQ010 Populus trichoca... 42 0.021
gb|CV228827.1|CV228827 WS01911.B21_F18 PT-DX-N-A-10 Populus... 42 0.021
gb|CV238031.1|CV238031 WS0125.B21_A19 PT-GT-FL-A-3 Populus ... 42 0.021
gb|CV252237.1|CV252237 PX0011.B21_A12 PT-X-FL-A-1 Populus t... 42 0.021
gb|CV262685.1|CV262685 WS0202.B21_D20 PTxN-IB-N-A-11 Populu... 42 0.021
gb|CX181022.1|CX181022 F07_45-15_11.ab1 leaf inoculated wit... 42 0.021
gb|CX185146.1|CX185146 F11_45-41_11.ab1 leaf inoculated wit... 42 0.021
gb|DT469652.1|DT469652 WS01918.C21_H10 PT-DX-N-A-10 Populus... 42 0.021
gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, compl... 42 0.021
gb|BI122281.1|BI122281 I004P65P Populus leaf cDNA library P... 40 0.082
gb|CK103910.1|CK103910 I004P65.5pR Populus senescing leaves... 40 0.082
gb|CX179521.1|CX179521 F07_45-71_11.ab1 leaf inoculated wit... 40 0.082
gb|CX655613.1|CX655613 PO02037C09 Poplar SC cDNA library Po... 40 0.082
gb|CX657035.1|CX657035 PO02057F02 Poplar SC cDNA library Po... 40 0.082
>gb|CF236877.1|CF236877 PtaJXT8C6C0606 Poplar cDNA library from young tension xylem Populus
alba x Populus tremula cDNA 5', mRNA sequence
Length = 630
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 292 gatgggaacacttacatgaaaataaaggttgtaaattttgg 332
||||| || |||||| ||||||||||| |||| ||||||||
Sbjct: 279 gatggcaaaacttacctgaaaataaagattgtgaattttgg 319
>gb|CK090799.1|CK090799 F025P61.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F025P61 3', mRNA sequence
Length = 835
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gatgggaacacttacatgaaaataaaggttgtaaattttgg 332
||||| || |||||| ||||||||||| |||| ||||||||
Sbjct: 493 gatggcaaaacttacctgaaaataaagattgtgaattttgg 453
>gb|CN520211.1|CN520211 GQ0108.B3_D15 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_D15 5', mRNA sequence
Length = 754
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 292 gatgggaacacttacatgaaaataaaggttgtaaattttgg 332
||||| || |||||| ||||||||||| |||| ||||||||
Sbjct: 548 gatggcaaaacttacctgaaaataaagattgtgaattttgg 588
>gb|CV228827.1|CV228827 WS01911.B21_F18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_F18 3', mRNA sequence
Length = 765
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gatgggaacacttacatgaaaataaaggttgtaaattttgg 332
||||| || |||||| ||||||||||| |||| ||||||||
Sbjct: 502 gatggcaaaacttacctgaaaataaagattgtgaattttgg 462
Score = 38.2 bits (19), Expect = 0.32
Identities = 100/127 (78%)
Strand = Plus / Minus
Query: 23 tagctgaagctgcatttctcattggattagaaaggaacagcgacgtggttgagatggcaa 82
|||||||||||| ||| || ||||| | |||| ||||||||| | || ||||||||||
Sbjct: 765 tagctgaagctggattccttattgggctggaaaagaacagcgatattgtggagatggcaa 706
Query: 83 gttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatgctatagtct 142
| | ||| ||||| | ||||| | |||||| |||||||| |||||||| || ||||
Sbjct: 705 gctatgcaccacttttcgtaaatgccaatgataggaggtggaatccagatgcgattgtct 646
Query: 143 ttaactc 149
| |||||
Sbjct: 645 tcaactc 639
>gb|CV238031.1|CV238031 WS0125.B21_A19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_A19 3', mRNA sequence
Length = 716
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gatgggaacacttacatgaaaataaaggttgtaaattttgg 332
||||| || |||||| ||||||||||| |||| ||||||||
Sbjct: 482 gatggcaaaacttacctgaaaataaagattgtgaattttgg 442
>gb|CV252237.1|CV252237 PX0011.B21_A12 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0011_A12 3', mRNA sequence
Length = 671
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gatgggaacacttacatgaaaataaaggttgtaaattttgg 332
||||| || |||||| ||||||||||| |||| ||||||||
Sbjct: 486 gatggcaaaacttacctgaaaataaagattgtgaattttgg 446
>gb|CV262685.1|CV262685 WS0202.B21_D20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0202_D20 3', mRNA sequence
Length = 587
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gatgggaacacttacatgaaaataaaggttgtaaattttgg 332
||||| || |||||| ||||||||||| |||| ||||||||
Sbjct: 485 gatggcaaaacttacctgaaaataaagattgtgaattttgg 445
>gb|CX181022.1|CX181022 F07_45-15_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 512
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 292 gatgggaacacttacatgaaaataaaggttgtaaattttgg 332
||||| || |||||| ||||||||||| |||| ||||||||
Sbjct: 310 gatggcaaaacttacctgaaaataaagattgtgaattttgg 350
Score = 40.1 bits (20), Expect = 0.082
Identities = 107/136 (78%)
Strand = Plus / Plus
Query: 14 tagctgctttagctgaagctgcatttctcattggattagaaaggaacagcgacgtggttg 73
||||||| |||||||||||| ||| || ||||| | |||| ||||||||| | || |
Sbjct: 38 tagctgcactagctgaagctggattccttattgggctggaaaagaacagcgatattgtgg 97
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||| | ||| ||||| | ||||| | |||||| |||||||| |||||||
Sbjct: 98 agatggcaagctatgcaccacttttcgtaaatgccaatgataggaggtggaatccagatg 157
Query: 134 ctatagtctttaactc 149
| || ||||| |||||
Sbjct: 158 cgattgtcttcaactc 173
>gb|CX185146.1|CX185146 F11_45-41_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 380
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 292 gatgggaacacttacatgaaaataaaggttgtaaattttgg 332
||||| || |||||| ||||||||||| |||| ||||||||
Sbjct: 189 gatggcaaaacttacctgaaaataaagattgtgaattttgg 229
>gb|DT469652.1|DT469652 WS01918.C21_H10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_H10 3', mRNA sequence
Length = 790
Score = 42.1 bits (21), Expect = 0.021
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 292 gatgggaacacttacatgaaaataaaggttgtaaattttgg 332
||||| || |||||| ||||||||||| |||| ||||||||
Sbjct: 502 gatggcaaaacttacctgaaaataaagattgtgaattttgg 462
Score = 40.1 bits (20), Expect = 0.082
Identities = 107/136 (78%)
Strand = Plus / Minus
Query: 14 tagctgctttagctgaagctgcatttctcattggattagaaaggaacagcgacgtggttg 73
||||||| |||||||||||| ||| || ||||| | |||| ||||||||| | || |
Sbjct: 774 tagctgcactagctgaagctggattccttattgggctggaaaagaacagcgatattgtgg 715
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||| | ||| ||||| | ||||| | |||||| |||||||| |||||||
Sbjct: 714 agatggcaagctatgcaccacttttcgtaaatgccaatgataggaggtggaatccagatg 655
Query: 134 ctatagtctttaactc 149
| || ||||| |||||
Sbjct: 654 cgattgtcttcaactc 639
>gb|AC149299.1| Populus trichocarpa clone Pop1-037B22, complete sequence
Length = 143392
Score = 42.1 bits (21), Expect = 0.021
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 310 aaaataaaggttgtaaatttt 330
|||||||||||||||||||||
Sbjct: 127277 aaaataaaggttgtaaatttt 127257
>gb|BI122281.1|BI122281 I004P65P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.082
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 301 acttacatgaaaataaaggttgtaaattttgg 332
|||||| ||||||||||| |||| ||||||||
Sbjct: 369 acttacctgaaaataaagattgtgaattttgg 400
>gb|CK103910.1|CK103910 I004P65.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I004P65 5', mRNA sequence
Length = 486
Score = 40.1 bits (20), Expect = 0.082
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 301 acttacatgaaaataaaggttgtaaattttgg 332
|||||| ||||||||||| |||| ||||||||
Sbjct: 371 acttacctgaaaataaagattgtgaattttgg 402
>gb|CX179521.1|CX179521 F07_45-71_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 686
Score = 40.1 bits (20), Expect = 0.082
Identities = 107/136 (78%)
Strand = Plus / Plus
Query: 14 tagctgctttagctgaagctgcatttctcattggattagaaaggaacagcgacgtggttg 73
||||||| |||||||||||| ||| || ||||| | |||| ||||||||| | || |
Sbjct: 524 tagctgcactagctgaagctggattccttattgggctggaaaagaacagcgatattgtgg 583
Query: 74 agatggcaagttgtgctccactccttgtaaacgacaatgaccaaaggtggaacccagatg 133
|||||||||| | ||| ||||| | ||||| | |||||| |||||||| |||||||
Sbjct: 584 agatggcaagctatgcaccacttttcgtaaatgccaatgataggaggtggaatccagatg 643
Query: 134 ctatagtctttaactc 149
| || |||||| ||||
Sbjct: 644 cgattgtctttcactc 659
>gb|CX655613.1|CX655613 PO02037C09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02037C09 5', mRNA sequence
Length = 426
Score = 40.1 bits (20), Expect = 0.082
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 301 acttacatgaaaataaaggttgtaaattttgg 332
|||||| ||||||||||| |||| ||||||||
Sbjct: 21 acttacctgaaaataaagattgtgaattttgg 52
>gb|CX657035.1|CX657035 PO02057F02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02057F02 5', mRNA sequence
Length = 455
Score = 40.1 bits (20), Expect = 0.082
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 301 acttacatgaaaataaaggttgtaaattttgg 332
|||||| ||||||||||| |||| ||||||||
Sbjct: 21 acttacctgaaaataaagattgtgaattttgg 52
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 55,219
Number of Sequences: 369679
Number of extensions: 55219
Number of successful extensions: 13162
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13130
Number of HSP's gapped (non-prelim): 33
length of query: 526
length of database: 203,408,664
effective HSP length: 19
effective length of query: 507
effective length of database: 196,384,763
effective search space: 99567074841
effective search space used: 99567074841
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)