BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH2a02.xg.2.1
(644 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY162184.1| Populus tremuloides cellulose synthase-like ... 96 2e-018
gb|AY196961.1| Populus tremuloides cellulose synthase 6 (Ce... 64 7e-009
gb|AY162181.1| Populus tremuloides cellulose synthase (CesA... 56 2e-006
gb|DT473511.1|DT473511 WS01229.BR_N17 PT-GT-FL-A-3 Populus ... 46 0.002
gb|AY573573.2| Populus tremula x Populus tremuloides cellul... 46 0.002
gb|AY573572.1| Populus tremula x Populus tremuloides cellul... 44 0.006
gb|BI138150.1|BI138150 F099P76Y Populus flower cDNA library... 38 0.40
gb|CK098168.1|CK098168 A006P66.5pR Hybrid aspen plasmid lib... 38 0.40
gb|CK101560.1|CK101560 F099P76.5pR Populus flower cDNA libr... 38 0.40
>gb|AY162184.1| Populus tremuloides cellulose synthase-like protein D4 (CSLD4) mRNA,
partial cds
Length = 3570
Score = 95.6 bits (48), Expect = 2e-018
Identities = 153/188 (81%)
Strand = Plus / Plus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| |||||||| ||||| || |||||||| ||||| ||||| || ||||| || |
Sbjct: 1011 tttgtctctactgcagatccagaaaaagaaccgccacttgtcactgccaacaccatctta 1070
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| || || || ||||| ||||| || || ||||||||||| |||||||| |||||||||
Sbjct: 1071 tcaattctagcagctgattacccagttgaaaagctttcttgttatgtttccgatgatgga 1130
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgctaatatgtgggtt 454
|| || || | || ||||| |||||||||||||| || || ||||| ||| | ||||||
Sbjct: 1131 ggtgcacttttaacatttgaggccatggctgaagcagcgagttttgcaaatgtatgggtt 1190
Query: 455 cctttctg 462
||||||||
Sbjct: 1191 cctttctg 1198
>gb|AY196961.1| Populus tremuloides cellulose synthase 6 (CesA6) mRNA, complete cds
Length = 3773
Score = 63.9 bits (32), Expect = 7e-009
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||| || || ||||| || |||||||| |||||||||| ||||| | ||| |||||
Sbjct: 1165 gaaagagccccctctggtgaccgcaaacacggttctgtccattcttgcagttgattaccc 1224
Query: 358 tgtggagaagctttcttgctatgtttctgatgatgg 393
||| || ||| |||| || |||||||||||||||||
Sbjct: 1225 tgttgacaaggtttcatgttatgtttctgatgatgg 1260
>gb|AY162181.1| Populus tremuloides cellulose synthase (CesA4) mRNA, complete cds
Length = 3640
Score = 56.0 bits (28), Expect = 2e-006
Identities = 79/96 (82%)
Strand = Plus / Plus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||||||||| | || |||||||||||| | ||||||| ||||||| ||| |||||
Sbjct: 1134 gaaagaacctcctattgtaacagcaaacactgtgttgtccattcttgctgttgattaccc 1193
Query: 358 tgtggagaagctttcttgctatgtttctgatgatgg 393
||| || || | || ||||||||||| ||||||||
Sbjct: 1194 tgtcgacaaagtatcatgctatgtttcagatgatgg 1229
>gb|DT473511.1|DT473511 WS01229.BR_N17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_N17 5', mRNA sequence
Length = 912
Score = 46.1 bits (23), Expect = 0.002
Identities = 95/119 (79%)
Strand = Plus / Plus
Query: 302 gaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccctgtg 361
|||||||||||||||||||| || ||| | || || || ||||| | || ||||| ||
Sbjct: 665 gaacctccactggtcacagccaatactgtgctatctattcttgcagtagattacccagtc 724
Query: 362 gagaagctttcttgctatgtttctgatgatggaggggctctcctgacttttgaagccat 420
|| || | |||||||||||||| |||||||||| ||| | |||| |||||||||||
Sbjct: 725 gacaaagtctcttgctatgtttcagatgatggagctgctatgttgacatttgaagccat 783
>gb|AY573573.2| Populus tremula x Populus tremuloides cellulose synthase (CesA3-1)
mRNA, complete cds
Length = 3250
Score = 46.1 bits (23), Expect = 0.002
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgg 393
||||||||||||| ||||| || ||||| || |||| |||||||| |||||||||||
Sbjct: 872 tccatccttgctgtggactatcccgtggataaagtttcctgctatgtgtctgatgatgg 930
>gb|AY573572.1| Populus tremula x Populus tremuloides cellulose synthase (CesA2)
mRNA, complete cds
Length = 3991
Score = 44.1 bits (22), Expect = 0.006
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctg 347
||||||||||||||| |||| |||||||| | |||||||||||||||
Sbjct: 1585 gaaagaacctccacttatcactgcaaacacagtcttgtccatccttgctg 1634
>gb|BI138150.1|BI138150 F099P76Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 452
Score = 38.2 bits (19), Expect = 0.40
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 405 tgacttttgaagccatggctgaagctgctagctttgctaatatgtgggttcctttctgt 463
|||| |||||||| ||||||| | ||||||||||| | || |||||||||||||||
Sbjct: 127 tgacgtttgaagctctggctgagacagctagctttgccagaatttgggttcctttctgt 185
>gb|CK098168.1|CK098168 A006P66.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A006P66 5', mRNA sequence
Length = 698
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 372 cttgctatgtttctgatga 390
|||||||||||||||||||
Sbjct: 594 cttgctatgtttctgatga 576
>gb|CK101560.1|CK101560 F099P76.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F099P76 5', mRNA sequence
Length = 582
Score = 38.2 bits (19), Expect = 0.40
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 405 tgacttttgaagccatggctgaagctgctagctttgctaatatgtgggttcctttctgt 463
|||| |||||||| ||||||| | ||||||||||| | || |||||||||||||||
Sbjct: 126 tgacgtttgaagctctggctgagacagctagctttgccagaatttgggttcctttctgt 184
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 83,649
Number of Sequences: 369679
Number of extensions: 83649
Number of successful extensions: 24130
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24115
Number of HSP's gapped (non-prelim): 15
length of query: 644
length of database: 203,408,664
effective HSP length: 19
effective length of query: 625
effective length of database: 196,384,763
effective search space: 122740476875
effective search space used: 122740476875
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)