BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.1
(352 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX175731.1|CX175731 B08_69-39_04.ab1 leaf inoculated wit... 34 3.3
gb|CX176278.1|CX176278 B01_69-96_03.ab1 leaf inoculated wit... 34 3.3
>gb|CX175731.1|CX175731 B08_69-39_04.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 265
Score = 34.2 bits (17), Expect = 3.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 41 gattcttccatggttgt 57
|||||||||||||||||
Sbjct: 132 gattcttccatggttgt 116
>gb|CX176278.1|CX176278 B01_69-96_03.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 656
Score = 34.2 bits (17), Expect = 3.3
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 41 gattcttccatggttgt 57
|||||||||||||||||
Sbjct: 214 gattcttccatggttgt 198
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,182
Number of Sequences: 369679
Number of extensions: 28182
Number of successful extensions: 7134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7132
Number of HSP's gapped (non-prelim): 2
length of query: 352
length of database: 203,408,664
effective HSP length: 18
effective length of query: 334
effective length of database: 196,754,442
effective search space: 65715983628
effective search space used: 65715983628
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)