BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF25f04.yg.3.3
(1599 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX176710.1|CX176710 E05_69-3_09.ab1 leaf inoculated with... 133 2e-029
gb|BU837911.1|BU837911 T107A11 Populus apical shoot cDNA li... 107 1e-021
gb|CV257059.1|CV257059 WS0245.B21_I21 PTxD-ICC-N-A-14 Popul... 107 1e-021
gb|DT513448.1|DT513448 WS02422.B21_B07 PTxD-ICC-N-A-14 Popu... 107 1e-021
gb|CA924195.1|CA924195 MTU7CL.P2.H03 Aspen leaf cDNA Librar... 100 3e-019
gb|CA924314.1|CA924314 MTU7CL.P4.C03 Aspen leaf cDNA Librar... 100 3e-019
gb|CN518099.1|CN518099 GQ0091.B3_M10 GQ009 Populus trichoca... 82 8e-014
gb|BU811752.1|BU811752 UL88TB08 Populus leaf cDNA library P... 76 5e-012
gb|BU827836.1|BU827836 K009P85P Populus apical shoot cDNA l... 76 5e-012
gb|CX653585.1|CX653585 PO02004B07 Poplar SC cDNA library Po... 68 1e-009
gb|DT489489.1|DT489489 WS02542.B21_F23 PT-MB-N-A-15 Populus... 66 4e-009
gb|BU815823.1|BU815823 N047A09 Populus bark cDNA library Po... 60 3e-007
gb|BU808966.1|BU808966 UL52PB01 Populus leaf cDNA library P... 58 1e-006
gb|DN500454.1|DN500454 UL52PB01.5pR Populus cold stressed l... 56 4e-006
gb|DT508840.1|DT508840 WS02422.BR_B07 PTxD-ICC-N-A-14 Popul... 56 4e-006
>gb|CX176710.1|CX176710 E05_69-3_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 430
Score = 133 bits (67), Expect = 2e-029
Identities = 142/167 (85%)
Strand = Plus / Plus
Query: 304 aagcagtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgtaccc 363
|||||||| || || ||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct: 158 aagcagttcgtgcccccaatgatggatcctgttcttggtgattatgctaggaatttgcca 217
Query: 364 gatgcaagggagtctgaagttctgtccttgtttgcaacaatcattaacaagtacaaaggg 423
||||| ||||| || |||||| |||| | ||||||||||| || |||||||||||||
Sbjct: 218 gatgctagggaatcagaagttttgtcactttttgcaacaattataaacaagtacaaagct 277
Query: 424 gaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtg 470
| |||| | || ||||| ||||| |||||||| ||||||||||||||
Sbjct: 278 gcaatgatagaagatgtacctcgaatatttgaagctgttttccagtg 324
>gb|BU837911.1|BU837911 T107A11 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 530
Score = 107 bits (54), Expect = 1e-021
Identities = 123/146 (84%)
Strand = Plus / Plus
Query: 1048 gtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgct 1107
||||| || ||||| ||||| ||||||||||| || ||||| ||||| ||||||||||||
Sbjct: 21 gtgcaatcaaaggaattctccgctcaggataataaagatctctacgccgaagaggctgct 80
Query: 1108 gcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgattgcccctagc 1167
|| || || ||||| ||||| ||| |||||||| ||||||| ||||| ||||||||||
Sbjct: 81 gctcagagggaaagagagcgacaaagaatgctttccattccagggcttattgcccctaat 140
Query: 1168 gaattgcaagacgagatggtagattc 1193
||| | ||||| |||||| |||||||
Sbjct: 141 gaaatacaagatgagatgttagattc 166
>gb|CV257059.1|CV257059 WS0245.B21_I21 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_I21 3', mRNA sequence
Length = 741
Score = 107 bits (54), Expect = 1e-021
Identities = 123/146 (84%)
Strand = Plus / Minus
Query: 1048 gtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgct 1107
||||| || ||||| ||||| ||||||||||| || ||||| ||||| ||||||||||||
Sbjct: 493 gtgcaatcaaaggaattctccgctcaggataataaagatctctacgctgaagaggctgct 434
Query: 1108 gcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgattgcccctagc 1167
|| || || ||||| ||||| ||| |||||||| ||||||| ||||| ||||||||||
Sbjct: 433 gctcagagggaaagagagcgacaaagaatgctttccattccagggcttattgcccctaat 374
Query: 1168 gaattgcaagacgagatggtagattc 1193
||| | ||||| |||||| |||||||
Sbjct: 373 gaaatacaagatgagatgttagattc 348
>gb|DT513448.1|DT513448 WS02422.B21_B07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_B07 3', mRNA sequence
Length = 777
Score = 107 bits (54), Expect = 1e-021
Identities = 123/146 (84%)
Strand = Plus / Minus
Query: 1048 gtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgct 1107
||||| || ||||| ||||| ||||||||||| || ||||| ||||| ||||||||||||
Sbjct: 526 gtgcaatcaaaggaattctccgctcaggataataaagatctctacgctgaagaggctgct 467
Query: 1108 gcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgattgcccctagc 1167
|| || || ||||| ||||| ||| |||||||| ||||||| ||||| ||||||||||
Sbjct: 466 gctcagagggaaagagagcgacaaagaatgctttccattccagggcttattgcccctaat 407
Query: 1168 gaattgcaagacgagatggtagattc 1193
||| | ||||| |||||| |||||||
Sbjct: 406 gaaatacaagatgagatgttagattc 381
Score = 44.1 bits (22), Expect = 0.016
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 896 ataatgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaaca 955
||||||| ||||||||||| || || ||||| ||||| | || |||||||| || ||||
Sbjct: 678 ataatgcaatgtttgttcgtgagtataccattaaacttctgggtacatcattcccaaaca 619
Query: 956 tgactg 961
||||||
Sbjct: 618 tgactg 613
>gb|CA924195.1|CA924195 MTU7CL.P2.H03 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 485
Score = 99.6 bits (50), Expect = 3e-019
Identities = 122/146 (83%)
Strand = Plus / Plus
Query: 1048 gtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgct 1107
||||| || ||||| ||||| ||||||||||| || ||||| ||||| |||||||||||
Sbjct: 107 gtgcaatcaaaggaattctccgctcaggataataaagatctctacgccgaagaggctgcc 166
Query: 1108 gcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgattgcccctagc 1167
|| || || ||||| ||||| ||| |||||||| ||||||| ||||| ||||||||||
Sbjct: 167 gctcagagggaaagagagcgacaaagaatgctttccattccagggcttattgcccctaat 226
Query: 1168 gaattgcaagacgagatggtagattc 1193
||| | ||||| |||||| |||||||
Sbjct: 227 gaaatacaagatgagatgttagattc 252
>gb|CA924314.1|CA924314 MTU7CL.P4.C03 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 485
Score = 99.6 bits (50), Expect = 3e-019
Identities = 122/146 (83%)
Strand = Plus / Plus
Query: 1048 gtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgct 1107
||||| || ||||| ||||| ||||||||||| || ||||| ||||| |||||||||||
Sbjct: 107 gtgcaatcaaaggaattctccgctcaggataataaagatctctacgccgaagaggctgcc 166
Query: 1108 gcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgattgcccctagc 1167
|| || || ||||| ||||| ||| |||||||| ||||||| ||||| ||||||||||
Sbjct: 167 gctcagagggaaagagagcgacaaagaatgctttccattccagggcttattgcccctaat 226
Query: 1168 gaattgcaagacgagatggtagattc 1193
||| | ||||| |||||| |||||||
Sbjct: 227 gaaatacaagatgagatgttagattc 252
>gb|CN518099.1|CN518099 GQ0091.B3_M10 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0091_M10 5', mRNA sequence
Length = 532
Score = 81.8 bits (41), Expect = 8e-014
Identities = 86/101 (85%)
Strand = Plus / Plus
Query: 733 tactttttgacaattgagcaagagatttttgcagtcctcacagacacattccataaacct 792
|||||||||||||||||||| || || ||||| || | ||||| ||||| || ||||||
Sbjct: 66 tactttttgacaattgagcaggaaatatttgctgtattgacagatacatttcacaaacct 125
Query: 793 ggtttcaagcttcatgtttcggtgctacaacacttgttttg 833
||||| ||| | ||||||| ||||||||||||||| |||||
Sbjct: 126 ggttttaagttgcatgttttggtgctacaacacttattttg 166
Score = 60.0 bits (30), Expect = 3e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 896 ataatgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaaca 955
||||||| ||||||||||| || |||||||| ||||| | || |||||||| |||||||
Sbjct: 235 ataatgctatgtttgttcgtgagtacaccattaaacttctgggcacatcattccctaaca 294
Query: 956 tgactg 961
||||||
Sbjct: 295 tgactg 300
Score = 56.0 bits (28), Expect = 4e-006
Identities = 94/118 (79%)
Strand = Plus / Plus
Query: 1048 gtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgct 1107
||||| || ||||| || || ||||||||||| || ||||| || || || | |||||
Sbjct: 387 gtgcaatcaaaggaattttctgctcaggataataaagatctctatgcagangnnnctgct 446
Query: 1108 gcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgattgccccta 1165
| || || ||||||||||| ||| |||||||| ||||||| |||| ||||||||||
Sbjct: 447 gttcagagngaaagggagcgacaaagaatgctttccattccagggcntattgccccta 504
>gb|BU811752.1|BU811752 UL88TB08 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 559
Score = 75.8 bits (38), Expect = 5e-012
Identities = 119/146 (81%)
Strand = Plus / Plus
Query: 1048 gtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgct 1107
||||| || ||||| || || ||||||||||| || ||||| || || ||||||||||||
Sbjct: 178 gtgcaatcaaaggaattttctgctcaggataataaagatctctatgcagaagaggctgct 237
Query: 1108 gcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgattgcccctagc 1167
| || || ||||||||||| ||| |||||||| | ||||| || || ||||||||||
Sbjct: 238 gttcagagggaaagggagcgacaaagaatgctttcgattccaggtcttattgcccctaat 297
Query: 1168 gaattgcaagacgagatggtagattc 1193
||| | ||||| |||||| |||||||
Sbjct: 298 gaaatacaagatgagatgttagattc 323
Score = 67.9 bits (34), Expect = 1e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 896 ataatgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaaca 955
||||||| ||||||||||| || |||||||| ||||| || || |||||||| |||||||
Sbjct: 26 ataatgctatgtttgttcgtgagtacaccattaaacttttgggcacatcattccctaaca 85
Query: 956 tgactg 961
||||||
Sbjct: 86 tgactg 91
>gb|BU827836.1|BU827836 K009P85P Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 519
Score = 75.8 bits (38), Expect = 5e-012
Identities = 119/146 (81%)
Strand = Plus / Plus
Query: 1048 gtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgct 1107
||||| || ||||| || || ||||||||||| || ||||| || || ||||||||||||
Sbjct: 313 gtgcaatcaaaggaattttctgctcaggataataaagatctctatgcagaagaggctgct 372
Query: 1108 gcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgattgcccctagc 1167
| || || ||||||||||| ||| |||||||| | ||||| || || ||||||||||
Sbjct: 373 gttcagagggaaagggagcgacaaagaatgctttcgattccaggtcttattgcccctaat 432
Query: 1168 gaattgcaagacgagatggtagattc 1193
||| | ||||| |||||| |||||||
Sbjct: 433 gaaatacaagatgagatgttagattc 458
Score = 67.9 bits (34), Expect = 1e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 896 ataatgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaaca 955
||||||| ||||||||||| || |||||||| ||||| || || |||||||| |||||||
Sbjct: 161 ataatgctatgtttgttcgtgagtacaccattaaacttttgggcacatcattccctaaca 220
Query: 956 tgactg 961
||||||
Sbjct: 221 tgactg 226
Score = 63.9 bits (32), Expect = 2e-008
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 742 acaattgagcaagagatttttgcagtcctcacagacacattccataaacctggtttcaag 801
||||||||||| || || ||||| || | ||||| ||||| || ||||||||||| |||
Sbjct: 1 acaattgagcaggaaatatttgctgtattgacagatacatttcacaaacctggttttaag 60
Query: 802 cttcatgtttcggtgctacaacacttgttttg 833
| ||||||| ||||||||||||||| |||||
Sbjct: 61 ttgcatgttttggtgctacaacacttattttg 92
>gb|CX653585.1|CX653585 PO02004B07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02004B07 5', mRNA sequence
Length = 369
Score = 67.9 bits (34), Expect = 1e-009
Identities = 58/66 (87%)
Strand = Plus / Plus
Query: 896 ataatgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaaca 955
||||||| ||||||||||| || |||||||| ||||| || || |||||||| |||||||
Sbjct: 139 ataatgctatgtttgttcgtgagtacaccattaaacttttgggcacatcattccctaaca 198
Query: 956 tgactg 961
||||||
Sbjct: 199 tgactg 204
Score = 60.0 bits (30), Expect = 3e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 772 acagacacattccataaacctggtttcaagcttcatgtttcggtgctacaacacttgttt 831
||||| ||||| || ||||||||||| ||| | ||||||| ||||||||||||||| |||
Sbjct: 9 acagatacatttcacaaacctggttttaagttgcatgttttggtgctacaacacttattt 68
Query: 832 tg 833
||
Sbjct: 69 tg 70
Score = 46.1 bits (23), Expect = 0.004
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 1048 gtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgct 1107
||||| || ||||| || || ||||||||||| || ||||| || || ||||||||||||
Sbjct: 291 gtgcaatcaaaggaattttctgctcaggataataaagatctctatgcagaagaggctgct 350
Query: 1108 gcccaaagagaaagggagc 1126
| || || ||||||||||
Sbjct: 351 gttcagagggaaagggagc 369
>gb|DT489489.1|DT489489 WS02542.B21_F23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02542_F23 3', mRNA sequence
Length = 562
Score = 65.9 bits (33), Expect = 4e-009
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 1117 gaaagggagcgccaacgaatgcttgccattccggggctgattgcccctagcgaattgcaa 1176
||||||||||| ||| |||||||| ||||||| ||||| |||||||||| ||| | |||
Sbjct: 552 gaaagggagcgacaaagaatgctttccattccagggcttattgcccctaatgaaatacaa 493
Query: 1177 gacgagatggtagattc 1193
|| |||||| |||||||
Sbjct: 492 gatgagatgttagattc 476
>gb|BU815823.1|BU815823 N047A09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 204
Score = 60.0 bits (30), Expect = 3e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 772 acagacacattccataaacctggtttcaagcttcatgtttcggtgctacaacacttgttt 831
||||| ||||| || ||||||||||| ||| | ||||||| ||||||||||||||| |||
Sbjct: 12 acagatacatttcacaaacctggttttaagttgcatgttttggtgctacaacacttattt 71
Query: 832 tg 833
||
Sbjct: 72 tg 73
Score = 54.0 bits (27), Expect = 2e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 896 ataatgccatgtttgttcgagattacaccataaaactcttaggaacatcatttcctaaca 955
||||||| ||||||||||| || |||||||| ||||| || || |||| ||| |||||||
Sbjct: 142 ataatgctatgtttgttcgtgagtacaccattaaacttttgggcacattattccctaaca 201
Query: 956 tga 958
|||
Sbjct: 202 tga 204
>gb|BU808966.1|BU808966 UL52PB01 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 459
Score = 58.0 bits (29), Expect = 1e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 127 ttggacatgctaacagtctacagaatgtacagcgagcttgtatcaagcacgattgctgaa 186
||||||||||| | || |||||||||||||| |||||| ||||||||| ||||| |||
Sbjct: 319 ttggacatgcttaatgtgtacagaatgtacagtgagcttatatcaagcagtattgcagaa 378
Query: 187 ggagg 191
|||||
Sbjct: 379 ggagg 383
>gb|DN500454.1|DN500454 UL52PB01.5pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL52PB01 5',
mRNA sequence
Length = 404
Score = 56.0 bits (28), Expect = 4e-006
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 112 atttcactaattttcttggacatgctaacagtctacagaatgtacagcgagcttgtatca 171
|||||||| || || ||||||||||| | || |||||||||||||| |||||| |||||
Sbjct: 299 atttcacttatatttttggacatgcttaatgtgtacagaatgtacagtgagcttatatca 358
Query: 172 agca 175
||||
Sbjct: 359 agca 362
>gb|DT508840.1|DT508840 WS02422.BR_B07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_B07 5', mRNA sequence
Length = 265
Score = 56.0 bits (28), Expect = 4e-006
Identities = 157/200 (78%)
Strand = Plus / Plus
Query: 583 tcaagtcagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagag 642
|||||| ||||| ||||| | ||||| |||||||| | ||||| ||| | |||||||||
Sbjct: 65 tcaagtgagcaactgaagttagtgatggattcaatcatatgggcattccgtcatacagag 124
Query: 643 agaaatattgcagagactggccttagcctgttgttggagatcttgaaaaaattccaggct 702
|| || || || |||||||| || | ||| ||| ||||||| |||| || || ||||||
Sbjct: 125 aggaacatagctgagactggtctaaacctattggtggagatgctgaagaactttcaggct 184
Query: 703 tcaggattccaaaaccaattctacaaaacctactttttgacaattgagcaagagattttt 762
|||| ||| || || ||||||| | |||||||||||||||||||| || || |||
Sbjct: 185 tcagagttctgtaatcagttctacaggtcatactttttgacaattgagcaggaaatattt 244
Query: 763 gcagtcctcacagacacatt 782
|| ||| | ||||| |||||
Sbjct: 245 gctgtcttgacagatacatt 264
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 209,919
Number of Sequences: 369679
Number of extensions: 209919
Number of successful extensions: 55775
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55738
Number of HSP's gapped (non-prelim): 37
length of query: 1599
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1580
effective length of database: 196,384,763
effective search space: 310287925540
effective search space used: 310287925540
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)