BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF18e02.yg.3.1
(315 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF231326.1|CF231326 PtaC0020B1B0103 Poplar cDNA library ... 38 0.19
gb|CX167589.1|CX167589 F05_69-67_11.ab1 leaf inoculated wit... 38 0.19
gb|BI124040.1|BI124040 I034P54P Populus leaf cDNA library P... 36 0.75
gb|BU811680.1|BU811680 UL87T2H11 Populus leaf cDNA library ... 36 0.75
gb|BU869834.1|BU869834 Q005B05 Populus flower cDNA library ... 36 0.75
gb|BU870799.1|BU870799 Q018E09 Populus flower cDNA library ... 36 0.75
gb|BU872271.1|BU872271 Q041B08 Populus flower cDNA library ... 36 0.75
gb|BU877220.1|BU877220 V031E03 Populus flower cDNA library ... 36 0.75
gb|BU882268.1|BU882268 UM74TG09 Populus flower cDNA library... 36 0.75
gb|BU892858.1|BU892858 P070D02 Populus petioles cDNA librar... 36 0.75
gb|CA822146.1|CA822146 R04C08 two-month-old roots from clon... 36 0.75
gb|CF230516.1|CF230516 PtaC0009C8C0806 Poplar cDNA library ... 36 0.75
gb|CF231766.1|CF231766 PtaC0025E1E0109 Poplar cDNA library ... 36 0.75
gb|CK087670.1|CK087670 A017P44.3pR Hybrid aspen plasmid lib... 36 0.75
gb|CN524760.1|CN524760 GQ015M08.T3_E03 GQ015 Populus tricho... 36 0.75
gb|CV225534.1|CV225534 WS0161.B21_K23 PT-DX-A-7 Populus tri... 36 0.75
gb|CV229388.1|CV229388 WS01913.B21_C08 PT-DX-N-A-10 Populus... 36 0.75
gb|CV235532.1|CV235532 WS0122.B21_I03 PT-GT-FL-A-3 Populus ... 36 0.75
gb|CV251704.1|CV251704 WS0118.B21.1_A21 PT-P-FL-A-2 Populus... 36 0.75
gb|CV252736.1|CV252736 PX0015.B21_M17 PT-X-FL-A-1 Populus t... 36 0.75
gb|CV261192.1|CV261192 WS02016.B21_B20 PTxN-IB-N-A-11 Popul... 36 0.75
gb|CV276522.1|CV276522 WS0141.B21_B02 PTxD-IL-A-5 Populus t... 36 0.75
gb|CV279093.1|CV279093 WS0148.B21_G01 PTxD-IL-A-5 Populus t... 36 0.75
gb|CX169963.1|CX169963 E05_69-16_09.ab1 leaf inoculated wit... 36 0.75
gb|BP930497.1|BP930497 BP930497 full-length enriched poplar... 36 0.75
gb|BP935165.1|BP935165 BP935165 full-length enriched poplar... 36 0.75
gb|DN490954.1|DN490954 UM42TA03.3pR Populus female catkins ... 36 0.75
gb|DN500959.1|DN500959 UM42TA03.5pR Populus female catkins ... 36 0.75
gb|DT471917.1|DT471917 WS0122.BR_I03 PT-GT-FL-A-3 Populus t... 36 0.75
gb|DT496858.1|DT496858 WS01124.BR_M03 PT-P-FL-A-2 Populus t... 36 0.75
gb|DT498427.1|DT498427 WS0115.BR_F07 PT-P-FL-A-2 Populus tr... 36 0.75
gb|DT499345.1|DT499345 WS0118.BR_A21 PT-P-FL-A-2 Populus tr... 36 0.75
gb|DV465611.1|DV465611 MTUNUL1.P40.G11 NUL Populus fremonti... 36 0.75
gb|BI122767.1|BI122767 I012P64P Populus leaf cDNA library P... 34 3.0
gb|BI123687.1|BI123687 I027P15P Populus leaf cDNA library P... 34 3.0
gb|BI124100.1|BI124100 I035P94P Populus leaf cDNA library P... 34 3.0
gb|BI125308.1|BI125308 I058P71P Populus leaf cDNA library P... 34 3.0
gb|BU810939.1|BU810939 UL78TA07 Populus leaf cDNA library P... 34 3.0
gb|BU819365.1|BU819365 UA42BPG10 Populus tremula cambium cD... 34 3.0
gb|BU825973.1|BU825973 UK115TB12 Populus apical shoot cDNA ... 34 3.0
gb|BU836247.1|BU836247 T084D03 Populus apical shoot cDNA li... 34 3.0
gb|BU866200.1|BU866200 S063H07 Populus imbibed seed cDNA li... 34 3.0
gb|BU882701.1|BU882701 UM81TB02 Populus flower cDNA library... 34 3.0
gb|CK094392.1|CK094392 I027P15.3pR Populus senescing leaves... 34 3.0
gb|CN523981.1|CN523981 GQ015M05.T3_E01 GQ015 Populus tricho... 34 3.0
gb|CN524174.1|CN524174 GQ015M03.T3_E01 GQ015 Populus tricho... 34 3.0
gb|CN549198.1|CN549198 GQ0243.B3_B04 GQ024 Populus trichoca... 34 3.0
gb|CK318408.1|CK318408 B9P08h07 Populus stem seasonal libra... 34 3.0
gb|CK318460.1|CK318460 B9P09e02 Populus stem seasonal libra... 34 3.0
gb|CK318467.1|CK318467 B9P09e10 Populus stem seasonal libra... 34 3.0
gb|AJ767277.1|AJ767277 AJ767277 Populus euphratica leaf adu... 34 3.0
gb|AJ768693.1|AJ768693 AJ768693 Populus euphratica leaf adu... 34 3.0
gb|AJ771369.1|AJ771369 AJ771369 Populus euphratica leaf 3-6... 34 3.0
gb|AJ774152.1|AJ774152 AJ774152 Populus euphratica shoot 3-... 34 3.0
gb|AJ774786.1|AJ774786 AJ774786 Populus euphratica shoot 3-... 34 3.0
gb|AJ775094.1|AJ775094 AJ775094 Populus euphratica shoot 3-... 34 3.0
gb|AJ775539.1|AJ775539 AJ775539 Populus euphratica shoot 3-... 34 3.0
gb|CV241345.1|CV241345 WS02511.B21_O23 PT-MB-N-A-15 Populus... 34 3.0
gb|CV248547.1|CV248547 WS01121.B21_C04 PT-P-FL-A-2 Populus ... 34 3.0
gb|CV248828.1|CV248828 WS01122.B21_B11 PT-P-FL-A-2 Populus ... 34 3.0
gb|CV251419.1|CV251419 WS0116.B21_P05 PT-P-FL-A-2 Populus t... 34 3.0
gb|CV251992.1|CV251992 WS0118.B21_P18 PT-P-FL-A-2 Populus t... 34 3.0
gb|CV252030.1|CV252030 WS0119.B21_B24 PT-P-FL-A-2 Populus t... 34 3.0
gb|CV260353.1|CV260353 WS02013.B21_N12 PTxN-IB-N-A-11 Popul... 34 3.0
gb|CV266203.1|CV266203 WS02029.B21_G03 PTxN-IB-N-A-11 Popul... 34 3.0
gb|CV272855.1|CV272855 WS0158.B21_O19 PTxN-IB-A-6 Populus t... 34 3.0
gb|CV275572.1|CV275572 WS0176.B21_O11 PTxD-NR-A-8 Populus t... 34 3.0
gb|CV277148.1|CV277148 WS0142.B21_M16 PTxD-IL-A-5 Populus t... 34 3.0
gb|CV279614.1|CV279614 WS0132.B21_I02 PTxD-IL-FL-A-4 Populu... 34 3.0
gb|CV280066.1|CV280066 WS0134.B21_K06 PTxD-IL-FL-A-4 Populu... 34 3.0
gb|CV280106.1|CV280106 WS0134.B21_N06 PTxD-IL-FL-A-4 Populu... 34 3.0
gb|CX169284.1|CX169284 G07_69-119_13.ab1 leaf inoculated wi... 34 3.0
gb|CX169622.1|CX169622 D08_69-115_08.ab1 leaf inoculated wi... 34 3.0
gb|CX180132.1|CX180132 G11_45-10_13.ab1 leaf inoculated wit... 34 3.0
gb|DT480317.1|DT480317 WS02528.BR_I21 PT-MB-N-A-15 Populus ... 34 3.0
gb|DT485560.1|DT485560 WS02528.B21_I21 PT-MB-N-A-15 Populus... 34 3.0
gb|DT491581.1|DT491581 WS02548.C21_C16 PT-MB-N-A-15 Populus... 34 3.0
gb|DT495663.1|DT495663 WS01121.BR_C04 PT-P-FL-A-2 Populus t... 34 3.0
gb|DT495990.1|DT495990 WS01122.BR_B11 PT-P-FL-A-2 Populus t... 34 3.0
gb|DT498995.1|DT498995 WS0116.BR_P05 PT-P-FL-A-2 Populus tr... 34 3.0
gb|DT502322.1|DT502322 WS0132.BR_I02 PTxD-IL-FL-A-4 Populus... 34 3.0
gb|DT502946.1|DT502946 WS0134.BR_N06 PTxD-IL-FL-A-4 Populus... 34 3.0
gb|DT506205.1|DT506205 WS01812.C21_P13 PTxD-IL-N-A-9 Populu... 34 3.0
gb|DT509070.1|DT509070 WS02422.BR_L15 PTxD-ICC-N-A-14 Popul... 34 3.0
gb|DT513688.1|DT513688 WS02422.B21_L15 PTxD-ICC-N-A-14 Popu... 34 3.0
gb|AC149480.1| Populus trichocarpa clone Pop1-048O04, compl... 34 3.0
gb|AC151955.2| Populus trichocarpa clone Pop1-041G20, compl... 34 3.0
>gb|CF231326.1|CF231326 PtaC0020B1B0103 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 754
Score = 38.2 bits (19), Expect = 0.19
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 109 ttctcaagtactcttcagt 127
|||||||||||||||||||
Sbjct: 395 ttctcaagtactcttcagt 377
>gb|CX167589.1|CX167589 F05_69-67_11.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 665
Score = 38.2 bits (19), Expect = 0.19
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 109 ttctcaagtactcttcagt 127
|||||||||||||||||||
Sbjct: 414 ttctcaagtactcttcagt 396
>gb|BI124040.1|BI124040 I034P54P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 354
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 166 attcacaaagaagctgaggaaaagaa 191
>gb|BU811680.1|BU811680 UL87T2H11 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 690
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 519 attcacaaagaagctgaggaaaagaa 544
>gb|BU869834.1|BU869834 Q005B05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 634
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 519 attcacaaagaagctgaggaaaagaa 544
>gb|BU870799.1|BU870799 Q018E09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 501
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 457 attcacaaagaagctgaggaaaagaa 482
>gb|BU872271.1|BU872271 Q041B08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 719
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 524 attcacaaagaagctgaggaaaagaa 549
>gb|BU877220.1|BU877220 V031E03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 707
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 503 attcacaaagaagctgaggaaaagaa 528
>gb|BU882268.1|BU882268 UM74TG09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 614
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 517 attcacaaagaagctgaggaaaagaa 542
>gb|BU892858.1|BU892858 P070D02 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 583
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 220 attcacaaagaagctgaggaaaagaa 245
>gb|CA822146.1|CA822146 R04C08 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 573
Score = 36.2 bits (18), Expect = 0.75
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 145 aaggcagtatactttcca 162
||||||||||||||||||
Sbjct: 165 aaggcagtatactttcca 148
>gb|CF230516.1|CF230516 PtaC0009C8C0806 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 702
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 402 attcacaaagaagctgaggaaaagaa 427
>gb|CF231766.1|CF231766 PtaC0025E1E0109 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 621
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 518 attcacaaagaagctgaggaaaagaa 543
>gb|CK087670.1|CK087670 A017P44.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A017P44 3', mRNA sequence
Length = 764
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 392 attcacaaagaagctgaggaaaagaa 367
>gb|CN524760.1|CN524760 GQ015M08.T3_E03 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M08_E03 5', mRNA sequence
Length = 664
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 164 attcacaaagaagctgaggaaaagaa 189
>gb|CV225534.1|CV225534 WS0161.B21_K23 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_K23
3', mRNA sequence
Length = 685
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 438 attcacaaagaagctgaggaaaagaa 413
>gb|CV229388.1|CV229388 WS01913.B21_C08 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01913_C08 3', mRNA sequence
Length = 703
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 532 attcacaaagaagctgaggaaaagaa 507
>gb|CV235532.1|CV235532 WS0122.B21_I03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0122_I03 3', mRNA sequence
Length = 559
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 436 attcacaaagaagctgaggaaaagaa 411
>gb|CV251704.1|CV251704 WS0118.B21.1_A21 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0118_A21 3', mRNA sequence
Length = 632
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 355 attcacaaagaagctgaggaaaagaa 330
>gb|CV252736.1|CV252736 PX0015.B21_M17 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_M17 3', mRNA sequence
Length = 681
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 436 attcacaaagaagctgaggaaaagaa 411
>gb|CV261192.1|CV261192 WS02016.B21_B20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02016_B20 3', mRNA sequence
Length = 411
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 400 attcacaaagaagctgaggaaaagaa 375
>gb|CV276522.1|CV276522 WS0141.B21_B02 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0141_B02 3', mRNA sequence
Length = 879
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 402 attcacaaagaagctgaggaaaagaa 377
>gb|CV279093.1|CV279093 WS0148.B21_G01 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0148_G01 3', mRNA sequence
Length = 803
Score = 36.2 bits (18), Expect = 0.75
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39 cagcaatcaccacagcaa 56
||||||||||||||||||
Sbjct: 91 cagcaatcaccacagcaa 108
>gb|CX169963.1|CX169963 E05_69-16_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 617
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 510 attcacaaagaagctgaggaaaagaa 535
>gb|BP930497.1|BP930497 BP930497 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-010_M23.r 3', mRNA sequence
Length = 504
Score = 36.2 bits (18), Expect = 0.75
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39 cagcaatcaccacagcaa 56
||||||||||||||||||
Sbjct: 229 cagcaatcaccacagcaa 246
>gb|BP935165.1|BP935165 BP935165 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-074_K17.r 3', mRNA sequence
Length = 541
Score = 36.2 bits (18), Expect = 0.75
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39 cagcaatcaccacagcaa 56
||||||||||||||||||
Sbjct: 101 cagcaatcaccacagcaa 118
>gb|DN490954.1|DN490954 UM42TA03.3pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM42TA03 3', mRNA sequence
Length = 657
Score = 36.2 bits (18), Expect = 0.75
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39 cagcaatcaccacagcaa 56
||||||||||||||||||
Sbjct: 153 cagcaatcaccacagcaa 170
>gb|DN500959.1|DN500959 UM42TA03.5pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM42TA03 5', mRNA sequence
Length = 784
Score = 36.2 bits (18), Expect = 0.75
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 39 cagcaatcaccacagcaa 56
||||||||||||||||||
Sbjct: 639 cagcaatcaccacagcaa 622
>gb|DT471917.1|DT471917 WS0122.BR_I03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0122_I03 5', mRNA sequence
Length = 543
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 498 attcacaaagaagctgaggaaaagaa 523
>gb|DT496858.1|DT496858 WS01124.BR_M03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01124_M03 5', mRNA sequence
Length = 926
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 518 attcacaaagaagctgaggaaaagaa 543
>gb|DT498427.1|DT498427 WS0115.BR_F07 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0115_F07
5', mRNA sequence
Length = 703
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 517 attcacaaagaagctgaggaaaagaa 542
>gb|DT499345.1|DT499345 WS0118.BR_A21 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0118_A21
5', mRNA sequence
Length = 617
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 517 attcacaaagaagctgaggaaaagaa 542
>gb|DV465611.1|DV465611 MTUNUL1.P40.G11 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 811
Score = 36.2 bits (18), Expect = 0.75
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaagaa 214
||||| ||||| ||||||||||||||
Sbjct: 529 attcacaaagaagctgaggaaaagaa 554
>gb|BI122767.1|BI122767 I012P64P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 408
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 19 ttgctcctggtggatca 35
|||||||||||||||||
Sbjct: 36 ttgctcctggtggatca 52
>gb|BI123687.1|BI123687 I027P15P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 440
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 357 tatttctgttactgtga 373
>gb|BI124100.1|BI124100 I035P94P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 294
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 250 tatttctgttactgtga 266
>gb|BI125308.1|BI125308 I058P71P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 373
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 340 tatttctgttactgtga 356
>gb|BU810939.1|BU810939 UL78TA07 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 422
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 382 tatttctgttactgtga 398
>gb|BU819365.1|BU819365 UA42BPG10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 590
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 528 tatttctgttactgtga 544
>gb|BU825973.1|BU825973 UK115TB12 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 491
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 292 tatttctgttactgtga 308
>gb|BU836247.1|BU836247 T084D03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 719
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 533 tatttctgttactgtga 549
>gb|BU866200.1|BU866200 S063H07 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 676
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 523 tatttctgttactgtga 539
>gb|BU882701.1|BU882701 UM81TB02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 547
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 19 ttgctcctggtggatca 35
|||||||||||||||||
Sbjct: 464 ttgctcctggtggatca 480
>gb|CK094392.1|CK094392 I027P15.3pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I027P15 3', mRNA sequence
Length = 558
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 174 tatttctgttactgtga 158
>gb|CN523981.1|CN523981 GQ015M05.T3_E01 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M05_E01 5', mRNA sequence
Length = 733
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 19 ttgctcctggtggatca 35
|||||||||||||||||
Sbjct: 222 ttgctcctggtggatca 238
>gb|CN524174.1|CN524174 GQ015M03.T3_E01 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M03_E01 5', mRNA sequence
Length = 759
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 19 ttgctcctggtggatca 35
|||||||||||||||||
Sbjct: 221 ttgctcctggtggatca 237
>gb|CN549198.1|CN549198 GQ0243.B3_B04 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0243_B04 5', mRNA sequence
Length = 533
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 327 tatttctgttactgtga 343
>gb|CK318408.1|CK318408 B9P08h07 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 639
Score = 34.2 bits (17), Expect = 3.0
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaaga 213
||||| ||||||||||| |||||||
Sbjct: 515 attcataaagatgctgaagaaaaga 539
>gb|CK318460.1|CK318460 B9P09e02 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 734
Score = 34.2 bits (17), Expect = 3.0
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 189 attcagaaagatgctgaggaaaaga 213
||||| ||||||||||| |||||||
Sbjct: 515 attcataaagatgctgaagaaaaga 539
>gb|CK318467.1|CK318467 B9P09e10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 529
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 326 tatttctgttactgtga 342
>gb|AJ767277.1|AJ767277 AJ767277 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100004B02F1, mRNA sequence
Length = 651
Score = 34.2 bits (17), Expect = 3.0
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 156 ctttccaagattatttctgtt 176
||||||||||| |||||||||
Sbjct: 77 ctttccaagatgatttctgtt 57
>gb|AJ768693.1|AJ768693 AJ768693 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100020G03F1, mRNA sequence
Length = 632
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 19 ttgctcctggtggatca 35
|||||||||||||||||
Sbjct: 242 ttgctcctggtggatca 258
>gb|AJ771369.1|AJ771369 AJ771369 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0001500006A02F1, mRNA sequence
Length = 332
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 45 tcaccacagcaacccca 61
|||||||||||||||||
Sbjct: 234 tcaccacagcaacccca 250
>gb|AJ774152.1|AJ774152 AJ774152 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300013C10F1, mRNA sequence
Length = 536
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 309 tatttctgttactgtga 325
>gb|AJ774786.1|AJ774786 AJ774786 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300024C05F1, mRNA sequence
Length = 578
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 495 tatttctgttactgtga 511
>gb|AJ775094.1|AJ775094 AJ775094 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300027G04F1, mRNA sequence
Length = 592
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 19 ttgctcctggtggatca 35
|||||||||||||||||
Sbjct: 434 ttgctcctggtggatca 450
>gb|AJ775539.1|AJ775539 AJ775539 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300033F11F1, mRNA sequence
Length = 529
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 45 tcaccacagcaacccca 61
|||||||||||||||||
Sbjct: 254 tcaccacagcaacccca 238
>gb|CV241345.1|CV241345 WS02511.B21_O23 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02511_O23 3', mRNA sequence
Length = 782
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 45 tcaccacagcaacccca 61
|||||||||||||||||
Sbjct: 384 tcaccacagcaacccca 400
>gb|CV248547.1|CV248547 WS01121.B21_C04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01121_C04 3', mRNA sequence
Length = 716
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 203 tatttctgttactgtga 187
>gb|CV248828.1|CV248828 WS01122.B21_B11 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01122_B11 3', mRNA sequence
Length = 696
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 222 tatttctgttactgtga 206
>gb|CV251419.1|CV251419 WS0116.B21_P05 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0116_P05 3', mRNA sequence
Length = 618
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 221 tatttctgttactgtga 205
>gb|CV251992.1|CV251992 WS0118.B21_P18 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0118_P18 3', mRNA sequence
Length = 529
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 222 tatttctgttactgtga 206
>gb|CV252030.1|CV252030 WS0119.B21_B24 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0119_B24 3', mRNA sequence
Length = 657
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 225 tatttctgttactgtga 209
>gb|CV260353.1|CV260353 WS02013.B21_N12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02013_N12 3', mRNA sequence
Length = 385
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 228 tatttctgttactgtga 212
>gb|CV266203.1|CV266203 WS02029.B21_G03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02029_G03 3', mRNA sequence
Length = 497
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 225 tatttctgttactgtga 209
>gb|CV272855.1|CV272855 WS0158.B21_O19 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0158_O19 3', mRNA sequence
Length = 939
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 200 tgctgaggaaaagaaag 216
|||||||||||||||||
Sbjct: 72 tgctgaggaaaagaaag 56
>gb|CV275572.1|CV275572 WS0176.B21_O11 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0176_O11 3', mRNA sequence
Length = 663
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 165 tatttctgttactgtga 149
>gb|CV277148.1|CV277148 WS0142.B21_M16 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_M16 3', mRNA sequence
Length = 710
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 223 tatttctgttactgtga 207
>gb|CV279614.1|CV279614 WS0132.B21_I02 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0132_I02 3', mRNA sequence
Length = 617
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 221 tatttctgttactgtga 205
>gb|CV280066.1|CV280066 WS0134.B21_K06 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0134_K06 3', mRNA sequence
Length = 583
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 221 tatttctgttactgtga 205
>gb|CV280106.1|CV280106 WS0134.B21_N06 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0134_N06 3', mRNA sequence
Length = 665
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 221 tatttctgttactgtga 205
>gb|CX169284.1|CX169284 G07_69-119_13.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 607
Score = 34.2 bits (17), Expect = 3.0
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 189 attcagaaagatgctgaggaaaaga 213
||||| ||||||||||| |||||||
Sbjct: 362 attcataaagatgctgaagaaaaga 338
>gb|CX169622.1|CX169622 D08_69-115_08.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 686
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 510 tatttctgttactgtga 526
>gb|CX180132.1|CX180132 G11_45-10_13.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 583
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 495 tatttctgttactgtga 511
>gb|DT480317.1|DT480317 WS02528.BR_I21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02528_I21 5', mRNA sequence
Length = 843
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 45 tcaccacagcaacccca 61
|||||||||||||||||
Sbjct: 559 tcaccacagcaacccca 543
>gb|DT485560.1|DT485560 WS02528.B21_I21 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02528_I21 3', mRNA sequence
Length = 850
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 45 tcaccacagcaacccca 61
|||||||||||||||||
Sbjct: 292 tcaccacagcaacccca 308
>gb|DT491581.1|DT491581 WS02548.C21_C16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02548_C16 3', mRNA sequence
Length = 808
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 45 tcaccacagcaacccca 61
|||||||||||||||||
Sbjct: 299 tcaccacagcaacccca 315
>gb|DT495663.1|DT495663 WS01121.BR_C04 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01121_C04 5', mRNA sequence
Length = 735
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 532 tatttctgttactgtga 548
>gb|DT495990.1|DT495990 WS01122.BR_B11 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01122_B11 5', mRNA sequence
Length = 751
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 530 tatttctgttactgtga 546
>gb|DT498995.1|DT498995 WS0116.BR_P05 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0116_P05
5', mRNA sequence
Length = 667
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 533 tatttctgttactgtga 549
>gb|DT502322.1|DT502322 WS0132.BR_I02 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0132_I02 5', mRNA sequence
Length = 701
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 483 tatttctgttactgtga 499
>gb|DT502946.1|DT502946 WS0134.BR_N06 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0134_N06 5', mRNA sequence
Length = 734
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 530 tatttctgttactgtga 546
>gb|DT506205.1|DT506205 WS01812.C21_P13 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01812_P13 3', mRNA sequence
Length = 811
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 223 tatttctgttactgtga 207
>gb|DT509070.1|DT509070 WS02422.BR_L15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_L15 5', mRNA sequence
Length = 736
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 495 tatttctgttactgtga 511
>gb|DT513688.1|DT513688 WS02422.B21_L15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02422_L15 3', mRNA sequence
Length = 735
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 167 tatttctgttactgtga 183
|||||||||||||||||
Sbjct: 242 tatttctgttactgtga 226
>gb|AC149480.1| Populus trichocarpa clone Pop1-048O04, complete sequence
Length = 141416
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 57 ccccatatttcatattt 73
|||||||||||||||||
Sbjct: 39739 ccccatatttcatattt 39755
>gb|AC151955.2| Populus trichocarpa clone Pop1-041G20, complete sequence
Length = 129953
Score = 34.2 bits (17), Expect = 3.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 57 ccccatatttcatattt 73
|||||||||||||||||
Sbjct: 103067 ccccatatttcatattt 103083
Database: Populus_nucl_with_EST.fasta
Posted date: May 2, 2006 3:31 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 49,009
Number of Sequences: 369679
Number of extensions: 49009
Number of successful extensions: 13812
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13704
Number of HSP's gapped (non-prelim): 108
length of query: 315
length of database: 203,408,664
effective HSP length: 18
effective length of query: 297
effective length of database: 196,754,442
effective search space: 58436069274
effective search space used: 58436069274
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)