BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE6a06.yg.3.1
(2118 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ778690.1|AJ778690 AJ778690 Populus euphratica cambium ... 70 4e-010
gb|CV276979.1|CV276979 WS0142.B21_F07 PTxD-IL-A-5 Populus t... 70 4e-010
gb|DT481537.1|DT481537 WS02532.BR_C11 PT-MB-N-A-15 Populus ... 70 4e-010
gb|DT486867.1|DT486867 WS02532.B21_C11 PT-MB-N-A-15 Populus... 70 4e-010
gb|CV232356.1|CV232356 WS0197.B21_F10 PT-DX-N-A-10 Populus ... 66 6e-009
gb|DT516736.1|DT516736 WS02432.B21_E04 PTxD-ICC-N-A-14 Popu... 62 9e-008
gb|CK090585.1|CK090585 F014P37.3pR Populus flower cDNA libr... 58 1e-006
gb|CX174759.1|CX174759 F05_69-118_11.ab1 leaf inoculated wi... 58 1e-006
gb|DT495466.1|DT495466 WS01120.BR_I19 PT-P-FL-A-2 Populus t... 56 6e-006
gb|BU867731.1|BU867731 M103F07 Populus flower cDNA library ... 50 4e-004
gb|CX176080.1|CX176080 A06_69-25_02.ab1 leaf inoculated wit... 50 4e-004
gb|CV253767.1|CV253767 WS0222.B21_P01 PTxD-ICC-A-12 Populus... 46 0.006
gb|BI138264.1|BI138264 F102P26Y Populus flower cDNA library... 44 0.022
gb|BI123986.1|BI123986 I033P08P Populus leaf cDNA library P... 42 0.086
gb|BI124077.1|BI124077 I035P49P Populus leaf cDNA library P... 42 0.086
gb|BI124098.1|BI124098 I035P90P Populus leaf cDNA library P... 42 0.086
gb|BU835365.1|BU835365 T073A05 Populus apical shoot cDNA li... 42 0.086
gb|BU896357.1|BU896357 X039E06 Populus wood cDNA library Po... 42 0.086
gb|BI121474.1|BI121474 F037P61Y Populus flower cDNA library... 40 0.34
gb|CB185027.1|CB185027 PopSC00163 Poplar SC cDNA library Po... 40 0.34
gb|CK090998.1|CK090998 F037P61.3pR Populus flower cDNA libr... 40 0.34
gb|CK101304.1|CK101304 F037P61.5pR Populus flower cDNA libr... 40 0.34
gb|AJ774232.1|AJ774232 AJ774232 Populus euphratica shoot 3-... 40 0.34
gb|AJ779778.1|AJ779778 AJ779778 Populus euphratica root 3-6... 40 0.34
gb|CV245587.1|CV245587 WS0257.B21_N11 PT-MB-N-A-15 Populus ... 40 0.34
gb|CV269795.1|CV269795 WS0209.B21_E08 PTxN-IB-N-A-11 Populu... 40 0.34
gb|CV276173.1|CV276173 WS0178.B21.1_O04 PTxD-NR-A-8 Populus... 40 0.34
gb|CX173118.1|CX173118 B05_69-24_03.ab1 leaf inoculated wit... 40 0.34
gb|DT482204.1|DT482204 WS02519.B21_C24 PT-MB-N-A-15 Populus... 40 0.34
>gb|AJ778690.1|AJ778690 AJ778690 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600004G01F1, mRNA sequence
Length = 590
Score = 69.9 bits (35), Expect = 4e-010
Identities = 161/203 (79%)
Strand = Plus / Plus
Query: 1184 actcaccagattgttgataggccgacacaaagccatgttttcctctccagggagtatgtt 1243
||||| ||||||||||||||||| || ||| | ||| | ||| || || || ||||||
Sbjct: 334 actcatcagattgttgataggccaacccaaggtcataaatacctttcaagagaatatgtt 393
Query: 1244 caaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttat 1303
|| ||||||||| | | ||||| | ||||| || |||||||||||||| |||| ||||
Sbjct: 394 cagccacagtggatttacgattgcattaatgcacggatcatattgccaactgaagcttat 453
Query: 1304 cttgttggaagagtacctccaccacatttgtctccttttgtggacaatgatgccgagggc 1363
| || ||||| | ||||| || ||| |||| |||||||| || |||||||| || |||
Sbjct: 454 atggtgggaaggattcctcccccgcatctgtcaccttttgttgataatgatgcagaaggc 513
Query: 1364 tacatgcctgagtatgcagagac 1386
|| || ||||| |||||||||||
Sbjct: 514 tatattcctgattatgcagagac 536
>gb|CV276979.1|CV276979 WS0142.B21_F07 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_F07 3', mRNA sequence
Length = 916
Score = 69.9 bits (35), Expect = 4e-010
Identities = 161/203 (79%)
Strand = Plus / Minus
Query: 1184 actcaccagattgttgataggccgacacaaagccatgttttcctctccagggagtatgtt 1243
||||| ||||||||||||||||| || ||| | ||| | ||| || || || ||||||
Sbjct: 820 actcatcagattgttgataggccaacccaaggtcataaatacctttcgagagaatatgtt 761
Query: 1244 caaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttat 1303
|| ||||||||| | | |||||| | ||||| || |||||||||||||| |||| ||||
Sbjct: 760 cagccacagtggatttatgattgcattaatgcacggatcatattgccaactgaagcttat 701
Query: 1304 cttgttggaagagtacctccaccacatttgtctccttttgtggacaatgatgccgagggc 1363
| || ||||| | ||||| || || |||| |||||||| || |||||||| || |||
Sbjct: 700 atggtgggaaggattcctcccccgcacctgtcgccttttgttgataatgatgcagaaggc 641
Query: 1364 tacatgcctgagtatgcagagac 1386
|| || ||||| |||||||||||
Sbjct: 640 tatattcctgattatgcagagac 618
>gb|DT481537.1|DT481537 WS02532.BR_C11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_C11 5', mRNA sequence
Length = 885
Score = 69.9 bits (35), Expect = 4e-010
Identities = 161/203 (79%)
Strand = Plus / Plus
Query: 1184 actcaccagattgttgataggccgacacaaagccatgttttcctctccagggagtatgtt 1243
||||| ||||||||||||||||| || ||| | ||| | ||| || || || ||||||
Sbjct: 330 actcatcagattgttgataggccaacccaaggtcataaatacctttcgagagaatatgtt 389
Query: 1244 caaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttat 1303
|| ||||||||| | | |||||| | ||||| || |||||||||||||| |||| ||||
Sbjct: 390 cagccacagtggatttatgattgcattaatgcacggatcatattgccaactgaagcttat 449
Query: 1304 cttgttggaagagtacctccaccacatttgtctccttttgtggacaatgatgccgagggc 1363
| || ||||| | ||||| || || |||| |||||||| || |||||||| || |||
Sbjct: 450 atggtgggaaggattcctcccccgcacctgtcgccttttgttgataatgatgcagaaggc 509
Query: 1364 tacatgcctgagtatgcagagac 1386
|| || ||||| |||||||||||
Sbjct: 510 tatattcctgattatgcagagac 532
>gb|DT486867.1|DT486867 WS02532.B21_C11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_C11 3', mRNA sequence
Length = 913
Score = 69.9 bits (35), Expect = 4e-010
Identities = 161/203 (79%)
Strand = Plus / Minus
Query: 1184 actcaccagattgttgataggccgacacaaagccatgttttcctctccagggagtatgtt 1243
||||| ||||||||||||||||| || ||| | ||| | ||| || || || ||||||
Sbjct: 866 actcatcagattgttgataggccaacccaaggtcataaatacctttcgagagaatatgtt 807
Query: 1244 caaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttat 1303
|| ||||||||| | | |||||| | ||||| || |||||||||||||| |||| ||||
Sbjct: 806 cagccacagtggatttatgattgcattaatgcacggatcatattgccaactgaagcttat 747
Query: 1304 cttgttggaagagtacctccaccacatttgtctccttttgtggacaatgatgccgagggc 1363
| || ||||| | ||||| || || |||| |||||||| || |||||||| || |||
Sbjct: 746 atggtgggaaggattcctcccccgcacctgtcgccttttgttgataatgatgcagaaggc 687
Query: 1364 tacatgcctgagtatgcagagac 1386
|| || ||||| |||||||||||
Sbjct: 686 tatattcctgattatgcagagac 664
>gb|CV232356.1|CV232356 WS0197.B21_F10 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0197_F10
3', mRNA sequence
Length = 800
Score = 65.9 bits (33), Expect = 6e-009
Identities = 120/149 (80%)
Strand = Plus / Minus
Query: 1238 tatgttcaaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaa 1297
|||||||| ||||||||| | | |||||| | ||||| || |||||||||||||| |||
Sbjct: 763 tatgttcagccacagtggatttatgattgcattaatgcacggatcatattgccaactgaa 704
Query: 1298 ggttatcttgttggaagagtacctccaccacatttgtctccttttgtggacaatgatgcc 1357
| |||| | || ||||| | ||||| || || |||| |||||||| || ||||||||
Sbjct: 703 gcttatatggtgggaaggattcctcccccgcacctgtcgccttttgttgataatgatgca 644
Query: 1358 gagggctacatgcctgagtatgcagagac 1386
|| ||||| || ||||| |||||||||||
Sbjct: 643 gaaggctatattcctgattatgcagagac 615
>gb|DT516736.1|DT516736 WS02432.B21_E04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02432_E04 3', mRNA sequence
Length = 972
Score = 61.9 bits (31), Expect = 9e-008
Identities = 160/203 (78%)
Strand = Plus / Minus
Query: 1184 actcaccagattgttgataggccgacacaaagccatgttttcctctccagggagtatgtt 1243
||||| ||||||||||||||||| || ||| | ||| | ||| || || || ||||||
Sbjct: 817 actcatcagattgttgataggccaacccaaggtcataaatacctttcgagagaatatgtt 758
Query: 1244 caaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaaggttat 1303
|| ||||||||| | | ||||| | ||||| || |||||||||||||| |||| ||||
Sbjct: 757 cagccacagtggatttacgattgcattaatgcacggatcatattgccaactgaagcttat 698
Query: 1304 cttgttggaagagtacctccaccacatttgtctccttttgtggacaatgatgccgagggc 1363
| || ||||| | ||||| || || |||| |||||||| || |||||||| || |||
Sbjct: 697 atggtgggaaggattcctcccccgcacctgtcgccttttgttgataatgatgcagaaggc 638
Query: 1364 tacatgcctgagtatgcagagac 1386
|| || ||||| |||||||||||
Sbjct: 637 tatattcctgattatgcagagac 615
>gb|CK090585.1|CK090585 F014P37.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F014P37 3', mRNA sequence
Length = 808
Score = 58.0 bits (29), Expect = 1e-006
Identities = 119/149 (79%)
Strand = Plus / Minus
Query: 1238 tatgttcaaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaa 1297
|||||||| ||||||||| | | ||||| | ||||| || |||||||||||||| |||
Sbjct: 806 tatgttcagccacagtggatttacgattgcattaatgcacggatcatattgccaactgaa 747
Query: 1298 ggttatcttgttggaagagtacctccaccacatttgtctccttttgtggacaatgatgcc 1357
| |||| | || ||||| | ||||| || || |||| |||||||| || ||||||||
Sbjct: 746 gcttatatggtgggaaggattcctcccccgcacctgtcgccttttgttgataatgatgca 687
Query: 1358 gagggctacatgcctgagtatgcagagac 1386
|| ||||| || ||||| |||||||||||
Sbjct: 686 gaaggctatattcctgattatgcagagac 658
>gb|CX174759.1|CX174759 F05_69-118_11.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 726
Score = 58.0 bits (29), Expect = 1e-006
Identities = 119/149 (79%)
Strand = Plus / Plus
Query: 1238 tatgttcaaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaacagaa 1297
|||||||| ||||||||| | | ||||| | ||||| || |||||||||||||| |||
Sbjct: 63 tatgttcagccacagtggatttacgattgcattaatgcacggatcatattgccaactgaa 122
Query: 1298 ggttatcttgttggaagagtacctccaccacatttgtctccttttgtggacaatgatgcc 1357
| |||| | || ||||| | ||||| || || |||| |||||||| || ||||||||
Sbjct: 123 gcttatatggtgggaaggattcctcccccgcacctgtcgccttttgttgataatgatgca 182
Query: 1358 gagggctacatgcctgagtatgcagagac 1386
|| ||||| || ||||| |||||||||||
Sbjct: 183 gaaggctatattcctgattatgcagagac 211
>gb|DT495466.1|DT495466 WS01120.BR_I19 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01120_I19
5', mRNA sequence
Length = 785
Score = 56.0 bits (28), Expect = 6e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 1271 aatgctcgtatcatattgccaacagaaggttatcttgttggaagagtacctccaccacat 1330
||||| || |||||||||||||| |||| |||| | || ||||| | ||||| || ||
Sbjct: 27 aatgcacggatcatattgccaactgaagcttatatggtgggaaggattcctcccccgcac 86
Query: 1331 ttgtctccttttgtggacaatgatgccgagggctacatgcctgagtatgcagagac 1386
|||| |||||||| || |||||||| || ||||| || ||||| |||||||||||
Sbjct: 87 ctgtcgccttttgttgataatgatgcagaaggctatattcctgattatgcagagac 142
>gb|BU867731.1|BU867731 M103F07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 669
Score = 50.1 bits (25), Expect = 4e-004
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 311 acttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgctcttcgt 370
||||||||||| || |||||||| ||||||| ||| | || |||||||| || |
Sbjct: 428 acttacaagctagacaggcttgttagagaaaggtttcctaagtttgttgatgcgctgaga 487
Query: 371 gacttggatgactgccttacaatggtgcatctgtttgcggcattacctgctgt 423
||||||||||| || | || ||||||||||| ||||| ||||||||||||||
Sbjct: 488 gacttggatgattgtttaaccatggtgcatctttttgcagcattacctgctgt 540
Score = 44.1 bits (22), Expect = 0.022
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 527 atttccgtgaagggcatatattatca 552
|||||||| |||||||||||||||||
Sbjct: 644 atttccgtaaagggcatatattatca 669
>gb|CX176080.1|CX176080 A06_69-25_02.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 671
Score = 50.1 bits (25), Expect = 4e-004
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 311 acttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgctcttcgt 370
||||||||||| || |||||||| ||||||| ||| | || |||||||| || |
Sbjct: 448 acttacaagctagacaggcttgttagagaaaggtttcctaagtttgttgatgcgctgaga 507
Query: 371 gacttggatgactgccttacaatggtgcatctgtttgcggcattacctgctgt 423
||||||||||| || | || ||||||||||| ||||| ||||||||||||||
Sbjct: 508 gacttggatgattgtttaaccatggtgcatctttttgcagcattacctgctgt 560
>gb|CV253767.1|CV253767 WS0222.B21_P01 PTxD-ICC-A-12 Populus trichocarpa x Populus deltoides
cDNA clone WS0222_P01 3', mRNA sequence
Length = 713
Score = 46.1 bits (23), Expect = 0.006
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 1332 tgtctccttttgtggacaatgatgccgagggctacatgcctgagtatgcagagac 1386
|||| |||||||| || |||||||| || ||||| || ||||| |||||||||||
Sbjct: 673 tgtcgccttttgttgataatgatgcagaaggctatattcctgattatgcagagac 619
>gb|BI138264.1|BI138264 F102P26Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 512
Score = 44.1 bits (22), Expect = 0.022
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 704 ataaatgtaaattatcctcctattctggatccacgtctggaagctttagc 753
|||||||| || ||||| |||||||| ||||| | ||||||||||||||
Sbjct: 43 ataaatgtgaagtatccacctattcttgatccccagctggaagctttagc 92
>gb|BI123986.1|BI123986 I033P08P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 376
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||||||||||
Sbjct: 286 gaggaggatgatgatgatgat 306
>gb|BI124077.1|BI124077 I035P49P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 516
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||||||||||
Sbjct: 13 gaggaggatgatgatgatgat 33
>gb|BI124098.1|BI124098 I035P90P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 514
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||||||||||
Sbjct: 79 gaggaggatgatgatgatgat 99
>gb|BU835365.1|BU835365 T073A05 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 455
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||||||||||
Sbjct: 211 gaggaggatgatgatgatgat 231
>gb|BU896357.1|BU896357 X039E06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 719
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||||||||||
Sbjct: 320 gaggaggatgatgatgatgat 340
>gb|BI121474.1|BI121474 F037P61Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 522
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatga 1695
||||||||||||||||||||
Sbjct: 75 gaggaggatgatgatgatga 94
>gb|CB185027.1|CB185027 PopSC00163 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PopSC00163, mRNA sequence
Length = 476
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1011 atgatgcagatgatgatgat 1030
||||||||||||||||||||
Sbjct: 333 atgatgcagatgatgatgat 352
>gb|CK090998.1|CK090998 F037P61.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F037P61 3', mRNA sequence
Length = 611
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1676 gaggaggatgatgatgatga 1695
||||||||||||||||||||
Sbjct: 537 gaggaggatgatgatgatga 518
>gb|CK101304.1|CK101304 F037P61.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F037P61 5', mRNA sequence
Length = 322
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatga 1695
||||||||||||||||||||
Sbjct: 76 gaggaggatgatgatgatga 95
>gb|AJ774232.1|AJ774232 AJ774232 Populus euphratica shoot 3-6 months Populus euphratica cDNA
clone P0000300014E04F1, mRNA sequence
Length = 375
Score = 40.1 bits (20), Expect = 0.34
Identities = 92/116 (79%)
Strand = Plus / Plus
Query: 1271 aatgctcgtatcatattgccaacagaaggttatcttgttggaagagtacctccaccacat 1330
||||| || |||||||||||||| |||| |||| | || ||||| | ||||| || ||
Sbjct: 223 aatgcacggatcatattgccaactgaagcttatatggtgggaaggattcctccccccgat 282
Query: 1331 ttgtctccttttgtggacaatgatgccgagggctacatgcctgagtatgcagagac 1386
|||| |||||||| || |||||||| | ||||| || ||||| |||||| ||||
Sbjct: 283 ctgtcaccttttgttgataatgatgcacaaggctatattcctgattatgcacagac 338
>gb|AJ779778.1|AJ779778 AJ779778 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800007A10F1, mRNA sequence
Length = 519
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1011 atgatgcagatgatgatgat 1030
||||||||||||||||||||
Sbjct: 292 atgatgcagatgatgatgat 311
>gb|CV245587.1|CV245587 WS0257.B21_N11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0257_N11
3', mRNA sequence
Length = 824
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1676 gaggaggatgatgatgatga 1695
||||||||||||||||||||
Sbjct: 704 gaggaggatgatgatgatga 685
>gb|CV269795.1|CV269795 WS0209.B21_E08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0209_E08 3', mRNA sequence
Length = 753
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1675 agaggaggatgatgatgatg 1694
||||||||||||||||||||
Sbjct: 606 agaggaggatgatgatgatg 587
>gb|CV276173.1|CV276173 WS0178.B21.1_O04 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0178_O04 3', mRNA sequence
Length = 724
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatg 1694
||||||||||||||||||||
Sbjct: 167 agaggaggatgatgatgatg 186
>gb|CX173118.1|CX173118 B05_69-24_03.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 675
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatg 1694
||||||||||||||||||||
Sbjct: 199 agaggaggatgatgatgatg 218
>gb|DT482204.1|DT482204 WS02519.B21_C24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_C24 3', mRNA sequence
Length = 830
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1676 gaggaggatgatgatgatga 1695
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Sbjct: 705 gaggaggatgatgatgatga 686
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 357,679
Number of Sequences: 369679
Number of extensions: 357679
Number of successful extensions: 111896
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 111780
Number of HSP's gapped (non-prelim): 105
length of query: 2118
length of database: 203,408,664
effective HSP length: 20
effective length of query: 2098
effective length of database: 196,015,084
effective search space: 411239646232
effective search space used: 411239646232
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)