BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= M73028.2.1
(1802 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX657100.1|CX657100 PO02060B05 Poplar SC cDNA library Po... 66 5e-009
gb|CA926682.1|CA926682 MTU6CR.P17.H10 Aspen root cDNA Libra... 56 5e-006
gb|DT509440.1|DT509440 WS02423.BR_L20 PTxD-ICC-N-A-14 Popul... 56 5e-006
gb|DT514054.1|DT514054 WS02423.B21_L20 PTxD-ICC-N-A-14 Popu... 56 5e-006
gb|DN500441.1|DN500441 UL50PD01.5pR Populus cold stressed l... 54 2e-005
gb|BU837990.1|BU837990 T108C04 Populus apical shoot cDNA li... 52 8e-005
gb|CN520600.1|CN520600 GQ0106.B3_F23 GQ010 Populus trichoca... 52 8e-005
gb|DN500008.1|DN500008 T108C04.5pR Populus shoot meristem c... 52 8e-005
gb|BU812564.1|BU812564 UL97TH03 Populus leaf cDNA library P... 50 3e-004
gb|BU828843.1|BU828843 K029P74P Populus apical shoot cDNA l... 50 3e-004
gb|BU891795.1|BU891795 P055C08 Populus petioles cDNA librar... 50 3e-004
gb|CN522824.1|CN522824 GQ0122.B3_B22 GQ012 Populus trichoca... 50 3e-004
gb|DN496300.1|DN496300 P055C08.5pR Populus petioles cDNA li... 50 3e-004
gb|DV464188.1|DV464188 MTUNUL1.P24.C03 NUL Populus fremonti... 50 3e-004
gb|AJ774504.1|AJ774504 AJ774504 Populus euphratica shoot 3-... 48 0.001
gb|CV263015.1|CV263015 WS02020.B21_B23 PTxN-IB-N-A-11 Popul... 48 0.001
gb|CV267471.1|CV267471 WS02031.B21_N11 PTxN-IB-N-A-11 Popul... 48 0.001
gb|AY129246.1| Populus x canescens putative MYB transcripti... 48 0.001
gb|CF936298.1|CF936298 PO3004D02 Populus tomentiglandulosa ... 46 0.005
gb|DT490198.1|DT490198 WS02544.B21_E22 PT-MB-N-A-15 Populus... 44 0.018
gb|BU881923.1|BU881923 UM69TD03 Populus flower cDNA library... 42 0.073
gb|CN192837.1|CN192837 PtdH1735 hybrid poplar systemically ... 42 0.073
gb|AJ771501.1|AJ771501 AJ771501 Populus euphratica root 3-6... 42 0.073
gb|CV244163.1|CV244163 WS0253.B21_O13 PT-MB-N-A-15 Populus ... 42 0.073
gb|BU817468.1|BU817468 UA17CPD03 Populus tremula cambium cD... 40 0.29
gb|BU827551.1|BU827551 K004P72P Populus apical shoot cDNA l... 40 0.29
gb|BU835813.1|BU835813 T079A03 Populus apical shoot cDNA li... 40 0.29
gb|CA930291.1|CA930291 MTU2CA.P9.F12 Aspen apex cDNA Librar... 40 0.29
gb|CV225551.1|CV225551 WS0161.B21_L19 PT-DX-A-7 Populus tri... 40 0.29
gb|CV261762.1|CV261762 WS02017.B21_K23 PTxN-IB-N-A-11 Popul... 40 0.29
gb|CV266772.1|CV266772 WS0203.B21_P02 PTxN-IB-N-A-11 Populu... 40 0.29
gb|CX173886.1|CX173886 B11_69-113_03.ab1 leaf inoculated wi... 40 0.29
gb|DT525716.1|DT525716 WS02046.C21_B16 PTxN-IB-N-A-11 Popul... 40 0.29
>gb|CX657100.1|CX657100 PO02060B05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060B05 5', mRNA sequence
Length = 673
Score = 65.9 bits (33), Expect = 5e-009
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaac 646
|||||||||||||||||||||||||||||||||
Sbjct: 311 cgaacagacaacgagatcaagaactactggaac 343
>gb|CA926682.1|CA926682 MTU6CR.P17.H10 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 683
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 611 ggccgaacagacaacgagatcaagaactactggaactcgcacctcagc 658
|||||||| ||||| || |||||||||||||||||||| || ||||||
Sbjct: 563 ggccgaactgacaatgaaatcaagaactactggaactcccatctcagc 516
>gb|DT509440.1|DT509440 WS02423.BR_L20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_L20 5', mRNA sequence
Length = 767
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 611 ggccgaacagacaacgagatcaagaactactggaactcgcacctcagc 658
|||||||| ||||| || |||||||||||||||||||| || ||||||
Sbjct: 523 ggccgaactgacaatgaaatcaagaactactggaactcccatctcagc 476
>gb|DT514054.1|DT514054 WS02423.B21_L20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_L20 3', mRNA sequence
Length = 897
Score = 56.0 bits (28), Expect = 5e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 611 ggccgaacagacaacgagatcaagaactactggaactcgcacctcagc 658
|||||||| ||||| || |||||||||||||||||||| || ||||||
Sbjct: 627 ggccgaactgacaatgaaatcaagaactactggaactcccatctcagc 674
>gb|DN500441.1|DN500441 UL50PD01.5pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL50PD01 5',
mRNA sequence
Length = 656
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 608 cccggccgaacagacaacgagatcaagaactactggaactcgcacct 654
||||| ||||| ||||| ||||||| ||||||||||||||| |||||
Sbjct: 420 cccggacgaactgacaatgagatcaggaactactggaactctcacct 466
>gb|BU837990.1|BU837990 T108C04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 676
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 440 cccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatcaactac 499
|||||||| || || || ||||| || |||||||||||||| ||||| ||||| ||||||
Sbjct: 165 cccaagaaagcgggtctcctccgctgtggcaagagctgccgtctccgctggatgaactac 224
Query: 500 ct 501
||
Sbjct: 225 ct 226
>gb|CN520600.1|CN520600 GQ0106.B3_F23 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0106_F23 5', mRNA sequence
Length = 801
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 440 cccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatcaactac 499
|||||||| || || || ||||| || |||||||||||||| ||||| ||||| ||||||
Sbjct: 299 cccaagaaagccggtctcctccgctgtggcaagagctgccgtctccgctggatgaactac 358
Query: 500 ct 501
||
Sbjct: 359 ct 360
>gb|DN500008.1|DN500008 T108C04.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T108C04 5', mRNA sequence
Length = 696
Score = 52.0 bits (26), Expect = 8e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 440 cccaagaatgcaggcctgctccggtgcggcaagagctgccggctccggtggatcaactac 499
|||||||| || || || ||||| || |||||||||||||| ||||| ||||| ||||||
Sbjct: 164 cccaagaaagcgggtctcctccgctgtggcaagagctgccgtctccgctggatgaactac 223
Query: 500 ct 501
||
Sbjct: 224 ct 225
>gb|BU812564.1|BU812564 UL97TH03 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 549
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaac 646
||||||||||| || ||||||||||||||||||
Sbjct: 333 cgaacagacaatgaaatcaagaactactggaac 365
>gb|BU828843.1|BU828843 K029P74P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 344
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaac 646
||||||||||| || ||||||||||||||||||
Sbjct: 129 cgaacagacaatgaaatcaagaactactggaac 161
>gb|BU891795.1|BU891795 P055C08 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 737
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaac 646
||||||||||| || ||||||||||||||||||
Sbjct: 334 cgaacagacaatgaaatcaagaactactggaac 366
>gb|CN522824.1|CN522824 GQ0122.B3_B22 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0122_B22 5', mRNA sequence
Length = 511
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaac 646
||||||||||| || ||||||||||||||||||
Sbjct: 29 cgaacagacaatgaaatcaagaactactggaac 61
>gb|DN496300.1|DN496300 P055C08.5pR Populus petioles cDNA library Populus tremula cDNA
clone P055C08 5', mRNA sequence
Length = 677
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaac 646
||||||||||| || ||||||||||||||||||
Sbjct: 334 cgaacagacaatgaaatcaagaactactggaac 366
>gb|DV464188.1|DV464188 MTUNUL1.P24.C03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 733
Score = 50.1 bits (25), Expect = 3e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaac 646
||||||||||| || ||||||||||||||||||
Sbjct: 353 cgaacagacaatgaaatcaagaactactggaac 385
>gb|AJ774504.1|AJ774504 AJ774504 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300021B08F1, mRNA sequence
Length = 603
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 611 ggccgaacagacaacgagatcaagaactactggaactcgcacctcagc 658
||||| || ||||| || ||||||||||| |||||||| |||||||||
Sbjct: 402 ggccggactgacaatgaaatcaagaactattggaactctcacctcagc 449
>gb|CV263015.1|CV263015 WS02020.B21_B23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02020_B23 3', mRNA sequence
Length = 487
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 614 cgaacagacaacgagatcaagaactactggaa 645
|||||||| || ||||||||||||||||||||
Sbjct: 63 cgaacagataatgagatcaagaactactggaa 32
>gb|CV267471.1|CV267471 WS02031.B21_N11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02031_N11 3', mRNA sequence
Length = 988
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 611 ggccgaacagacaacgagatcaagaactactggaactcgcacctcagc 658
||||| || ||||| || ||||||||||| |||||||| |||||||||
Sbjct: 633 ggccggactgacaatgaaatcaagaactattggaactctcacctcagc 586
>gb|AY129246.1| Populus x canescens putative MYB transcription factor (MYB) mRNA,
complete cds
Length = 1367
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 615 gaacagacaacgagatcaagaactactggaac 646
|||| |||||||| ||||||||||||||||||
Sbjct: 387 gaaccgacaacgaaatcaagaactactggaac 418
>gb|CF936298.1|CF936298 PO3004D02 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 1041
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactgga 644
||||||||||| || ||||||||||||||||
Sbjct: 326 cgaacagacaatgaaatcaagaactactgga 356
>gb|DT490198.1|DT490198 WS02544.B21_E22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02544_E22 3', mRNA sequence
Length = 673
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 615 gaacagacaacgagatcaagaactactgga 644
|||| ||||| |||||||||||||||||||
Sbjct: 623 gaactgacaatgagatcaagaactactgga 594
>gb|BU881923.1|BU881923 UM69TD03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 524
Score = 42.1 bits (21), Expect = 0.073
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 617 acagacaacgagatcaagaactactggaa 645
||||| ||||||||||||||||| |||||
Sbjct: 256 acagataacgagatcaagaactattggaa 284
>gb|CN192837.1|CN192837 PtdH1735 hybrid poplar systemically wound-induced leaf cDNA library
Populus trichocarpa x Populus deltoides cDNA 5, mRNA
sequence
Length = 428
Score = 42.1 bits (21), Expect = 0.073
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 617 acagacaacgagatcaagaactactggaa 645
||||| ||||||||||||||||| |||||
Sbjct: 383 acagataacgagatcaagaactattggaa 411
>gb|AJ771501.1|AJ771501 AJ771501 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600002A05F1, mRNA sequence
Length = 588
Score = 42.1 bits (21), Expect = 0.073
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaac 646
||||| ||||| || ||||||||||||||||||
Sbjct: 302 cgaacggacaatgaaatcaagaactactggaac 334
>gb|CV244163.1|CV244163 WS0253.B21_O13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0253_O13 3', mRNA sequence
Length = 600
Score = 42.1 bits (21), Expect = 0.073
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 617 acagacaacgagatcaagaactactggaa 645
||||| ||||||||||||||||| |||||
Sbjct: 582 acagataacgagatcaagaactattggaa 554
>gb|BU817468.1|BU817468 UA17CPD03 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 384
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 910 caacagcagcagcggcagca 929
||||||||||||||||||||
Sbjct: 70 caacagcagcagcggcagca 89
>gb|BU827551.1|BU827551 K004P72P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 436
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 623 aacgagatcaagaactactggaac 646
|||||||||||||| |||||||||
Sbjct: 276 aacgagatcaagaattactggaac 299
>gb|BU835813.1|BU835813 T079A03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 464
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 615 gaacagacaacgagatcaagaact 638
||||||| ||||||||||||||||
Sbjct: 292 gaacagataacgagatcaagaact 315
>gb|CA930291.1|CA930291 MTU2CA.P9.F12 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 522
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 623 aacgagatcaagaactactggaac 646
|||||||||||||| |||||||||
Sbjct: 316 aacgagatcaagaattactggaac 339
>gb|CV225551.1|CV225551 WS0161.B21_L19 PT-DX-A-7 Populus trichocarpa cDNA clone WS0161_L19
3', mRNA sequence
Length = 859
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 615 gaacagacaacgagatcaagaactactggaac 646
||||||| || ||||| |||||||||||||||
Sbjct: 854 gaacagataatgagataaagaactactggaac 823
>gb|CV261762.1|CV261762 WS02017.B21_K23 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02017_K23 3', mRNA sequence
Length = 873
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 615 gaacagacaacgagatcaagaactactggaac 646
||||||| || ||||| |||||||||||||||
Sbjct: 834 gaacagataatgagataaagaactactggaac 803
>gb|CV266772.1|CV266772 WS0203.B21_P02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0203_P02 3', mRNA sequence
Length = 831
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 615 gaacagacaacgagatcaagaactactggaac 646
||||||| || ||||| |||||||||||||||
Sbjct: 63 gaacagataatgagataaagaactactggaac 94
>gb|CX173886.1|CX173886 B11_69-113_03.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 705
Score = 40.1 bits (20), Expect = 0.29
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 615 gaacagacaacgagatcaagaactactggaac 646
||||||| || ||||| |||||||||||||||
Sbjct: 551 gaacagataatgagataaagaactactggaac 582
>gb|DT525716.1|DT525716 WS02046.C21_B16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_B16 3', mRNA sequence
Length = 862
Score = 40.1 bits (20), Expect = 0.29
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 619 agacaacgagatcaagaactactggaac 646
|||||| || ||||||||||||||||||
Sbjct: 862 agacaatgaaatcaagaactactggaac 835
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 130,823
Number of Sequences: 369679
Number of extensions: 130823
Number of successful extensions: 35081
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35037
Number of HSP's gapped (non-prelim): 44
length of query: 1802
length of database: 203,408,664
effective HSP length: 20
effective length of query: 1782
effective length of database: 196,015,084
effective search space: 349298879688
effective search space used: 349298879688
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)