BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L46398.2.1
(1263 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI137327.1|BI137327 F084P34Y Populus flower cDNA library... 52 5e-005
gb|BU869391.1|BU869391 M129E09 Populus flower cDNA library ... 52 5e-005
gb|BU875452.1|BU875452 V007C11 Populus flower cDNA library ... 52 5e-005
gb|BU883349.1|BU883349 UM89TD10 Populus flower cDNA library... 52 5e-005
gb|AF185574.2| Populus tremuloides transcription factor MAG... 52 5e-005
gb|AF034095.2| Populus tremuloides Apetala 1 protein mRNA, ... 52 5e-005
gb|BI120936.1|BI120936 F025P39Y Populus flower cDNA library... 42 0.051
gb|BI121441.1|BI121441 F036P89Y Populus flower cDNA library... 42 0.051
gb|BI138350.1|BI138350 F104P08Y Populus flower cDNA library... 42 0.051
gb|CK101151.1|CK101151 F025P39.5pR Populus flower cDNA libr... 42 0.051
gb|BU880392.1|BU880392 UM45TD08 Populus flower cDNA library... 40 0.20
gb|DN495282.1|DN495282 N032D10.5pR Populus bark cDNA librar... 40 0.20
gb|DT511195.1|DT511195 WS02429.BR_M24 PTxD-ICC-N-A-14 Popul... 40 0.20
gb|AY235222.1| Populus tremuloides SEP3-related MADS-box pr... 40 0.20
gb|AY359607.1| Populus yunnanensis sex male AGAMOUS (AG2) g... 40 0.20
gb|AY359609.1| Populus tomentosa sex female AGAMOUS (AG2) g... 40 0.20
>gb|BI137327.1|BI137327 F084P34Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 413
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 310 gtgctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgag 369
|||||||| || || ||||| || |||||||||||||| ||| |||||||||||||||
Sbjct: 302 gtgctctgtgatgctgaggttgctctcatcatcttctctaaccgtggcaagctctacgag 361
Query: 370 tt 371
||
Sbjct: 362 tt 363
>gb|BU869391.1|BU869391 M129E09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 665
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 310 gtgctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgag 369
|||||||| || || ||||| || |||||||||||||| ||| |||||||||||||||
Sbjct: 142 gtgctctgtgatgctgaggttgctctcatcatcttctctaaccgtggcaagctctacgag 201
Query: 370 tt 371
||
Sbjct: 202 tt 203
>gb|BU875452.1|BU875452 V007C11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 697
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 310 gtgctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgag 369
|||||||| || || ||||| || |||||||||||||| ||| |||||||||||||||
Sbjct: 386 gtgctctgtgatgctgaggttgctctcatcatcttctctaaccgtggcaagctctacgag 445
Query: 370 tt 371
||
Sbjct: 446 tt 447
>gb|BU883349.1|BU883349 UM89TD10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 558
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 310 gtgctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgag 369
|||||||| || || ||||| || |||||||||||||| ||| |||||||||||||||
Sbjct: 145 gtgctctgtgatgctgaggttgctctcatcatcttctctaaccgtggcaagctctacgag 204
Query: 370 tt 371
||
Sbjct: 205 tt 206
>gb|AF185574.2| Populus tremuloides transcription factor MAGL4 mRNA, complete cds
Length = 1195
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 310 gtgctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgag 369
|||||||| || || ||||| || |||||||||||||| ||| |||||||||||||||
Sbjct: 340 gtgctctgtgatgctgaggttgctctcatcatcttctctaaccgtggcaagctctacgag 399
Query: 370 tt 371
||
Sbjct: 400 tt 401
>gb|AF034095.2| Populus tremuloides Apetala 1 protein mRNA, partial cds
Length = 943
Score = 52.0 bits (26), Expect = 5e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 310 gtgctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgag 369
|||||||| || || ||||| || |||||||||||||| ||| |||||||||||||||
Sbjct: 85 gtgctctgtgatgctgaggttgctctcatcatcttctctaaccgtggcaagctctacgag 144
Query: 370 tt 371
||
Sbjct: 145 tt 146
>gb|BI120936.1|BI120936 F025P39Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 293
Score = 42.1 bits (21), Expect = 0.051
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 221 agctgaagcggatcgagaacaagat 245
||||||| |||||||||||||||||
Sbjct: 242 agctgaaacggatcgagaacaagat 266
>gb|BI121441.1|BI121441 F036P89Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 254
Score = 42.1 bits (21), Expect = 0.051
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 221 agctgaagcggatcgagaacaagat 245
||||||| |||||||||||||||||
Sbjct: 222 agctgaaacggatcgagaacaagat 246
>gb|BI138350.1|BI138350 F104P08Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 394
Score = 42.1 bits (21), Expect = 0.051
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 221 agctgaagcggatcgagaacaagat 245
||||||| |||||||||||||||||
Sbjct: 234 agctgaaacggatcgagaacaagat 258
>gb|CK101151.1|CK101151 F025P39.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F025P39 5', mRNA sequence
Length = 343
Score = 42.1 bits (21), Expect = 0.051
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 221 agctgaagcggatcgagaacaagat 245
||||||| |||||||||||||||||
Sbjct: 236 agctgaaacggatcgagaacaagat 260
>gb|BU880392.1|BU880392 UM45TD08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 474
Score = 40.1 bits (20), Expect = 0.20
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 289 aagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctcc 348
||||| ||||| ||||| ||||| || || || || ||||| || |||||||||||||||
Sbjct: 51 aagaaagcctatgagctttccgttctttgtgatgcagaggttgctctcatcatcttctcc 110
>gb|DN495282.1|DN495282 N032D10.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N032D10 5', mRNA sequence
Length = 392
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 158 agcagaagagagcaagctcg 177
||||||||||||||||||||
Sbjct: 385 agcagaagagagcaagctcg 366
>gb|DT511195.1|DT511195 WS02429.BR_M24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_M24 5', mRNA sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.20
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 289 aagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctcc 348
||||| ||||| ||||| ||||| || || || || ||||| || |||||||||||||||
Sbjct: 126 aagaaagcctatgagctttccgttctttgtgatgcagaggttgctctcatcatcttctcc 185
>gb|AY235222.1| Populus tremuloides SEP3-related MADS-box protein (M6) mRNA,
complete cds
Length = 1098
Score = 40.1 bits (20), Expect = 0.20
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 289 aagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctcc 348
||||| ||||| ||||| ||||| || || || || ||||| || |||||||||||||||
Sbjct: 95 aagaaagcctatgagctttccgttctttgtgaagcagaggttgctctcatcatcttctcc 154
>gb|AY359607.1| Populus yunnanensis sex male AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 40.1 bits (20), Expect = 0.20
Identities = 101/128 (78%)
Strand = Plus / Plus
Query: 226 aagcggatcgagaacaagatcaaccgccaggtcaccttctccaagcgccgcaacggcctg 285
|||||||||||||||| | ||| ||||| ||||| |||| ||| | || || || ||
Sbjct: 70 aagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcggaatggtttg 129
Query: 286 ctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatcttc 345
|||||||| ||||| || | ||||| || ||||| || ||||| || |||||| |||||
Sbjct: 130 ctcaagaaagcctatgaattatccgttctttgcgatgctgaggttgcactcatcgtcttc 189
Query: 346 tccggccg 353
||| ||||
Sbjct: 190 tccagccg 197
>gb|AY359609.1| Populus tomentosa sex female AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 40.1 bits (20), Expect = 0.20
Identities = 101/128 (78%)
Strand = Plus / Plus
Query: 226 aagcggatcgagaacaagatcaaccgccaggtcaccttctccaagcgccgcaacggcctg 285
|||||||||||||||| | ||| ||||| ||||| |||| ||| | || || || ||
Sbjct: 70 aagcggatcgagaacaccaccaatcgccaagtcactttctgcaaaaggcggaatggtttg 129
Query: 286 ctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatcttc 345
|||||||| ||||| || | ||||| || ||||| || ||||| || |||||| |||||
Sbjct: 130 ctcaagaaagcctatgaattatccgttctttgcgatgctgaggttgcactcatcgtcttc 189
Query: 346 tccggccg 353
||| ||||
Sbjct: 190 tccagccg 197
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 130,519
Number of Sequences: 369679
Number of extensions: 130519
Number of successful extensions: 35866
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 35846
Number of HSP's gapped (non-prelim): 22
length of query: 1263
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1244
effective length of database: 196,384,763
effective search space: 244302645172
effective search space used: 244302645172
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)