BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L20621.2.1
(1220 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK107271.1|CK107271 UB51DPH05.5pR Populus active cambium... 44 0.012
gb|AJ770025.1|AJ770025 AJ770025 Populus euphratica leaf 3-6... 44 0.012
gb|CX171602.1|CX171602 G11_69-47_13.ab1 leaf inoculated wit... 44 0.012
gb|CF233534.1|CF233534 PtaJXO0024G10G1014 Poplar cDNA libra... 42 0.049
gb|CV274371.1|CV274371 WS0173.B21_A20 PTxD-NR-A-8 Populus t... 42 0.049
gb|CX181453.1|CX181453 G08_45-28_14.ab1 leaf inoculated wit... 42 0.049
gb|CX660242.1|CX660242 PO01019G03 Poplar SC cDNA library Po... 42 0.049
gb|BU831448.1|BU831448 T021F05 Populus apical shoot cDNA li... 40 0.19
gb|BU873559.1|BU873559 Q056H03 Populus flower cDNA library ... 40 0.19
gb|CA927016.1|CA927016 MTU6CR.P3.H07 Aspen root cDNA Librar... 40 0.19
gb|CA928487.1|CA928487 MTU6TR.P3.C06 Aspen root cDNA Librar... 40 0.19
gb|CA934025.1|CA934025 MTU3TS.P1.G10 Aspen stem cDNA Librar... 40 0.19
gb|CB240213.1|CB240213 PopSC00187 Poplar SC cDNA library Po... 40 0.19
gb|CF230058.1|CF230058 PtaC0003C5C0505 Poplar cDNA library ... 40 0.19
gb|CF230360.1|CF230360 PtaC0007C8C0806 Poplar cDNA library ... 40 0.19
gb|AJ777804.1|AJ777804 AJ777804 Populus euphratica root 3-6... 40 0.19
gb|CV243330.1|CV243330 WS02518.B21_J01 PT-MB-N-A-15 Populus... 40 0.19
gb|CX185473.1|CX185473 C12_45-35_06.ab1 leaf inoculated wit... 40 0.19
gb|CX658220.1|CX658220 PO01011D06 Poplar SC cDNA library Po... 40 0.19
gb|DT479100.1|DT479100 WS02524.BR_M10 PT-MB-N-A-15 Populus ... 40 0.19
gb|DT493026.1|DT493026 WS02553.C21_C19 PT-MB-N-A-15 Populus... 40 0.19
>gb|CK107271.1|CK107271 UB51DPH05.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB51DPH05 5', mRNA sequence
Length = 648
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 cacagcagcagcaacaacaaca 79
||||||||||||||||||||||
Sbjct: 247 cacagcagcagcaacaacaaca 268
>gb|AJ770025.1|AJ770025 AJ770025 Populus euphratica leaf 3-6 months, adult Populus
euphratica cDNA clone P0001100005H07F1, mRNA sequence
Length = 336
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 872 agacctcgacctcgacctcgac 893
||||||||||||||||||||||
Sbjct: 121 agacctcgacctcgacctcgac 142
>gb|CX171602.1|CX171602 G11_69-47_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 668
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 872 agacctcgacctcgacctcgac 893
||||||||||||||||||||||
Sbjct: 418 agacctcgacctcgacctcgac 397
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 411 gacctcgacctcgacctcgac 391
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 873 gacctcgacctcgacctcgac 893
|||||||||||||||||||||
Sbjct: 405 gacctcgacctcgacctcgac 385
>gb|CF233534.1|CF233534 PtaJXO0024G10G1014 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 665
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 acagcagcagcaacaacaaca 79
|||||||||||||||||||||
Sbjct: 335 acagcagcagcaacaacaaca 355
>gb|CV274371.1|CV274371 WS0173.B21_A20 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0173_A20 3', mRNA sequence
Length = 722
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 59 acagcagcagcaacaacaaca 79
|||||||||||||||||||||
Sbjct: 658 acagcagcagcaacaacaaca 638
>gb|CX181453.1|CX181453 G08_45-28_14.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 609
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 acagcagcagcaacaacaaca 79
|||||||||||||||||||||
Sbjct: 163 acagcagcagcaacaacaaca 183
>gb|CX660242.1|CX660242 PO01019G03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01019G03 5', mRNA sequence
Length = 503
Score = 42.1 bits (21), Expect = 0.049
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 59 acagcagcagcaacaacaaca 79
|||||||||||||||||||||
Sbjct: 447 acagcagcagcaacaacaaca 427
>gb|BU831448.1|BU831448 T021F05 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 651
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 344 cagcagcagcaacaacaaca 363
>gb|BU873559.1|BU873559 Q056H03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 496 cagcagcagcaacaacaaca 515
>gb|CA927016.1|CA927016 MTU6CR.P3.H07 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 666
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 466 cagcagcagcaacaacaaca 447
>gb|CA928487.1|CA928487 MTU6TR.P3.C06 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 369
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 269 cagcagcagcaacaacaaca 288
>gb|CA934025.1|CA934025 MTU3TS.P1.G10 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 195 cagcagcagcaacaacaaca 214
>gb|CB240213.1|CB240213 PopSC00187 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00187, mRNA sequence
Length = 485
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 149 cagcagcagcaacaacaaca 168
>gb|CF230058.1|CF230058 PtaC0003C5C0505 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 592
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 203 cagcagcagcaacaacaaca 222
>gb|CF230360.1|CF230360 PtaC0007C8C0806 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 640
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 116 cagcagcagcaacaacaaca 135
>gb|AJ777804.1|AJ777804 AJ777804 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400035C12F1, mRNA sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 463 cagcagcagcaacaacaaca 444
>gb|CV243330.1|CV243330 WS02518.B21_J01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02518_J01 3', mRNA sequence
Length = 942
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 766 cagcagcagcaacaacaaca 747
>gb|CX185473.1|CX185473 C12_45-35_06.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 525
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 282 cagcagcagcaacaacaaca 301
>gb|CX658220.1|CX658220 PO01011D06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01011D06 5', mRNA sequence
Length = 602
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 347 cagcagcagcaacaacaaca 366
>gb|DT479100.1|DT479100 WS02524.BR_M10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02524_M10 5', mRNA sequence
Length = 830
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 357 cagcagcagcaacaacaaca 376
>gb|DT493026.1|DT493026 WS02553.C21_C19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02553_C19 3', mRNA sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 241 cagcagcagcaacaacaaca 222
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 114,732
Number of Sequences: 369679
Number of extensions: 114732
Number of successful extensions: 33621
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33543
Number of HSP's gapped (non-prelim): 75
length of query: 1220
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1201
effective length of database: 196,384,763
effective search space: 235858100363
effective search space used: 235858100363
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)