BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L18925.2.1
(1221 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT509633.1|DT509633 WS02424.BR_E10 PTxD-ICC-N-A-14 Popul... 100 2e-019
gb|DT510612.1|DT510612 WS02427.BR_A17 PTxD-ICC-N-A-14 Popul... 100 2e-019
gb|BU882889.1|BU882889 UM83TF04 Populus flower cDNA library... 92 6e-017
gb|DN501305.1|DN501305 UM83TF04.5pR Populus female catkins ... 92 6e-017
gb|DN491294.1|DN491294 UM83TF04.3pR Populus female catkins ... 84 1e-014
gb|BU883614.1|BU883614 UM95TA01 Populus flower cDNA library... 76 4e-012
gb|AF052570.1|AF052570 Populus balsamifera subsp. trichocar... 72 6e-011
gb|CV256507.1|CV256507 WS0244.B21_A19 PTxD-ICC-N-A-14 Popul... 70 2e-010
gb|DT517651.1|DT517651 WS02434.B21_O16 PTxD-ICC-N-A-14 Popu... 70 2e-010
gb|DT520688.1|DT520688 WS02448.B21_E04 PTxD-ICC-N-A-14 Popu... 70 2e-010
gb|BU878009.1|BU878009 V042A05 Populus flower cDNA library ... 68 9e-010
gb|BU882965.1|BU882965 UM84TE12 Populus flower cDNA library... 68 9e-010
gb|DN484153.1|DN484153 PTRI27.5pR Populus cDNA, trichocarpa... 68 9e-010
gb|AY359607.1| Populus yunnanensis sex male AGAMOUS (AG2) g... 64 1e-008
gb|AY359608.1| Populus yunnanensis sex male AGAMOUS (AG1) g... 64 1e-008
gb|AY359609.1| Populus tomentosa sex female AGAMOUS (AG2) g... 64 1e-008
gb|AY359610.1| Populus tomentosa sex female AGAMOUS (AG1) g... 64 1e-008
gb|AF052571.1|AF052571 Populus balsamifera subsp. trichocar... 56 3e-006
gb|AY359612.1| Populus tomentosa sex male AGAMOUS (AG1) gen... 56 3e-006
gb|AY359611.1| Populus tomentosa sex male AGAMOUS (AG2) gen... 52 5e-005
gb|CN519626.1|CN519626 GQ0104.B3_J10 GQ010 Populus trichoca... 44 0.012
gb|BU866911.1|BU866911 S072B09 Populus imbibed seed cDNA li... 40 0.19
gb|BU879372.1|BU879372 V059D02 Populus flower cDNA library ... 40 0.19
gb|BU879741.1|BU879741 V063H01 Populus flower cDNA library ... 40 0.19
>gb|DT509633.1|DT509633 WS02424.BR_E10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_E10 5', mRNA sequence
Length = 905
Score = 99.6 bits (50), Expect = 2e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctcag 983
|||||||||| ||||| ||||| || ||||||||||||||||||||||||| || ||||
Sbjct: 245 tgttgttggcgtactcatagagacggccacggctagagaagacgatgagggaaacttcag 186
Query: 984 cgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcaga 1043
| || || ||||| || | || || || ||||| | |||||||| | | ||||||||
Sbjct: 185 catcacaaaggacagataattcataggctttcttcaacagcccatttcttctcttgcaga 126
Query: 1044 aggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcctctaccca 1103
| || ||||| || |||| |||||||||||||||||||||||||| ||||||| ||||
Sbjct: 125 aagtaacctgacgattcgtagtgttctcgatcctcttgatctcaatctttcctcttccca 66
Query: 1104 tg 1105
||
Sbjct: 65 tg 64
>gb|DT510612.1|DT510612 WS02427.BR_A17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_A17 5', mRNA sequence
Length = 920
Score = 99.6 bits (50), Expect = 2e-019
Identities = 149/182 (81%)
Strand = Plus / Minus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctcag 983
|||||||||| ||||| ||||| || ||||||||||||||||||||||||| || ||||
Sbjct: 249 tgttgttggcgtactcatagagacggccacggctagagaagacgatgagggaaacttcag 190
Query: 984 cgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcaga 1043
| || || ||||| || | || || || ||||| | |||||||| | | ||||||||
Sbjct: 189 catcacaaaggacagataattcataggctttcttcaacagcccatttcttctcttgcaga 130
Query: 1044 aggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcctctaccca 1103
| || ||||| || |||| |||||||||||||||||||||||||| ||||||| ||||
Sbjct: 129 aagtaacctgacgattcgtagtgttctcgatcctcttgatctcaatctttcctcttccca 70
Query: 1104 tg 1105
||
Sbjct: 69 tg 68
>gb|BU882889.1|BU882889 UM83TF04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 588
Score = 91.7 bits (46), Expect = 6e-017
Identities = 148/182 (81%)
Strand = Plus / Minus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctcag 983
|||||||||| ||||| ||||| || ||||||||||||||||||||||| || || ||||
Sbjct: 285 tgttgttggcgtactcatagagacggccacggctagagaagacgatgagagcaacttcag 226
Query: 984 cgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcaga 1043
| || || || || || | || || || ||||| | ||||||||| | | ||||||||
Sbjct: 225 catcacatagaactgataattcataagctttcttcaagagcccatttctcctcttgcaga 166
Query: 1044 aggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcctctaccca 1103
| || ||||| || | ||| |||||||||||||||||||||| ||| ||||||| ||||
Sbjct: 165 aagtaacctgacgattggtggtgttctcgatcctcttgatctcgatctttcctcttccca 106
Query: 1104 tg 1105
||
Sbjct: 105 tg 104
>gb|DN501305.1|DN501305 UM83TF04.5pR Populus female catkins cDNA library Populus trichocarpa
cDNA clone UM83TF04 5', mRNA sequence
Length = 860
Score = 91.7 bits (46), Expect = 6e-017
Identities = 148/182 (81%)
Strand = Plus / Minus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctcag 983
|||||||||| ||||| ||||| || ||||||||||||||||||||||| || || ||||
Sbjct: 269 tgttgttggcgtactcatagagacggccacggctagagaagacgatgagagcaacttcag 210
Query: 984 cgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcaga 1043
| || || || || || | || || || ||||| | ||||||||| | | ||||||||
Sbjct: 209 catcacatagaactgataattcataagctttcttcaagagcccatttctcctcttgcaga 150
Query: 1044 aggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcctctaccca 1103
| || ||||| || | ||| |||||||||||||||||||||| ||| ||||||| ||||
Sbjct: 149 aagtaacctgacgattggtggtgttctcgatcctcttgatctcgatctttcctcttccca 90
Query: 1104 tg 1105
||
Sbjct: 89 tg 88
>gb|DN491294.1|DN491294 UM83TF04.3pR Populus female catkins cDNA library Populus trichocarpa
cDNA clone UM83TF04 3', mRNA sequence
Length = 813
Score = 83.8 bits (42), Expect = 1e-014
Identities = 148/182 (81%), Gaps = 1/182 (0%)
Strand = Plus / Plus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgagggccacctcag 983
|||||||||| ||||| ||||| || ||||||||||||||||||||||| || || ||||
Sbjct: 578 tgttgttggcgtactcatagagacggccacggctagagaagacgatgagagcaacttcag 637
Query: 984 cgtcgcagaggacggagagctcgtacgccttcttgaggagcccattgcggcgcttgcaga 1043
| || || || || || | || || || ||||| | ||||||||| | | ||||||||
Sbjct: 638 catcacatagaactgataattcataagctttcttcaagagcccatttctcctcttgcaga 697
Query: 1044 aggtgacctgccggctcgtgttgttctcgatcctcttgatctcaatccttcctctaccca 1103
| || ||||| || | ||| |||||||||||||||||||||| ||| ||||||| ||||
Sbjct: 698 aagt-acctgacgattggtggtgttctcgatcctcttgatctcgatctttcctcttccca 756
Query: 1104 tg 1105
||
Sbjct: 757 tg 758
>gb|BU883614.1|BU883614 UM95TA01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 613
Score = 75.8 bits (38), Expect = 4e-012
Identities = 158/198 (79%)
Strand = Plus / Minus
Query: 889 tgccttcttgtacctctcaacagtagccttgacactgttgttggcatactcgtagaggcg 948
|||||| ||||||||||||| || | |||||||| | ||| | ||||| || |||||
Sbjct: 488 tgcctttttgtacctctcaattgttgatttgacactatcgttagagtactcataaaggcg 429
Query: 949 accacggctagagaagacgatgagggccacctcagcgtcgcagaggacggagagctcgta 1008
||| |||||||||||||||||||| || |||||||| ||||| || || || | |||||
Sbjct: 428 accgcggctagagaagacgatgagtgcaacctcagcatcgcaaagaacagataattcgta 369
Query: 1009 cgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgccggctcgtgttgtt 1068
|| |||||||| | ||| |||| | |||||||| ||||| || || | ||| ||||
Sbjct: 368 ggctttcttgagcaaaccactgcgccttttgcagaaagtgacttggcgattggtggtgtt 309
Query: 1069 ctcgatcctcttgatctc 1086
|||||||| |||||||||
Sbjct: 308 ctcgatccgcttgatctc 291
>gb|AF052570.1|AF052570 Populus balsamifera subsp. trichocarpa AGAMOUS homolog (PTAG1) gene,
complete cds
Length = 11485
Score = 71.9 bits (36), Expect = 6e-011
Identities = 123/152 (80%)
Strand = Plus / Minus
Query: 935 tactcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagg 994
||||| || |||||||| |||||||||||||||||||| || |||||||| ||||| ||
Sbjct: 3284 tactcataaaggcgaccgcggctagagaagacgatgagtgcaacctcagcatcgcaaaga 3225
Query: 995 acggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgc 1054
|| || | ||||| || |||||||| | ||| |||| | |||||||| ||||| ||
Sbjct: 3224 acagataattcgtaggctttcttgagcaaaccactgcgccttttgcagaaagtgacttgg 3165
Query: 1055 cggctcgtgttgttctcgatcctcttgatctc 1086
|| | ||| |||||||||||| |||||||||
Sbjct: 3164 cgattggtggtgttctcgatccgcttgatctc 3133
>gb|CV256507.1|CV256507 WS0244.B21_A19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_A19 3', mRNA sequence
Length = 877
Score = 69.9 bits (35), Expect = 2e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgaggg 974
|||||||||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct: 807 tgttgttggcgtactcatagagacggccacggctagagaagacgatgaggg 857
>gb|DT517651.1|DT517651 WS02434.B21_O16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_O16 3', mRNA sequence
Length = 924
Score = 69.9 bits (35), Expect = 2e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgaggg 974
|||||||||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct: 810 tgttgttggcgtactcatagagacggccacggctagagaagacgatgaggg 860
>gb|DT520688.1|DT520688 WS02448.B21_E04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_E04 3', mRNA sequence
Length = 897
Score = 69.9 bits (35), Expect = 2e-010
Identities = 47/51 (92%)
Strand = Plus / Plus
Query: 924 tgttgttggcatactcgtagaggcgaccacggctagagaagacgatgaggg 974
|||||||||| ||||| ||||| || |||||||||||||||||||||||||
Sbjct: 808 tgttgttggcgtactcatagagacggccacggctagagaagacgatgaggg 858
>gb|BU878009.1|BU878009 V042A05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 278
Score = 67.9 bits (34), Expect = 9e-010
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 889 tgccttcttgtacctctcaacagtagccttgacactgttgttggcatactcgtagaggcg 948
|||||| |||||||| |||| |||| |||||||| ||||| | ||||| || |||||
Sbjct: 270 tgcctttttgtacctttcaattgtagatttgacactattgttagagtactcataaaggcg 211
Query: 949 accacggctagagaagacgatgagggccacctcagcgtcgca 990
|||||||| |||||||||||||| || |||||||| |||||
Sbjct: 210 tccacggctggagaagacgatgagtgcaacctcagcatcgca 169
>gb|BU882965.1|BU882965 UM84TE12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 562
Score = 67.9 bits (34), Expect = 9e-010
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 889 tgccttcttgtacctctcaacagtagccttgacactgttgttggcatactcgtagaggcg 948
|||||| |||||||| |||| |||| |||||||| ||||| | ||||| || |||||
Sbjct: 411 tgcctttttgtacctttcaattgtagatttgacactattgttagagtactcataaaggcg 352
Query: 949 accacggctagagaagacgatgagggccacctcagcgtcgca 990
|||||||| |||||||||||||| || |||||||| |||||
Sbjct: 351 tccacggctggagaagacgatgagtgcaacctcagcatcgca 310
>gb|DN484153.1|DN484153 PTRI27.5pR Populus cDNA, trichocarpa shoot library Populus
trichocarpa cDNA clone PTRI27 5', mRNA sequence
Length = 381
Score = 67.9 bits (34), Expect = 9e-010
Identities = 85/102 (83%)
Strand = Plus / Minus
Query: 889 tgccttcttgtacctctcaacagtagccttgacactgttgttggcatactcgtagaggcg 948
|||||| |||||||| |||| |||| |||||||| ||||| | ||||| || |||||
Sbjct: 364 tgcctttttgtacctttcaattgtagatttgacactattgttagagtactcataaaggcg 305
Query: 949 accacggctagagaagacgatgagggccacctcagcgtcgca 990
|||||||| |||||||||||||| || |||||||| |||||
Sbjct: 304 tccacggctggagaagacgatgagtgcaacctcagcatcgca 263
>gb|AY359607.1| Populus yunnanensis sex male AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 63.9 bits (32), Expect = 1e-008
Identities = 122/152 (80%)
Strand = Plus / Minus
Query: 935 tactcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagg 994
||||| || ||||| |||||||| |||||||||||||| || |||||||| ||||| ||
Sbjct: 215 tactcataaaggcgtccacggctggagaagacgatgagtgcaacctcagcatcgcaaaga 156
Query: 995 acggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgc 1054
||||| | || || || |||||||| | ||||| || | |||||||| ||||| ||
Sbjct: 155 acggataattcataggctttcttgagcaaaccattccgccttttgcagaaagtgacttgg 96
Query: 1055 cggctcgtgttgttctcgatcctcttgatctc 1086
|| | ||| |||||||||||| |||||||||
Sbjct: 95 cgattggtggtgttctcgatccgcttgatctc 64
>gb|AY359608.1| Populus yunnanensis sex male AGAMOUS (AG1) gene, partial cds
Length = 227
Score = 63.9 bits (32), Expect = 1e-008
Identities = 122/152 (80%)
Strand = Plus / Minus
Query: 935 tactcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagg 994
||||| || |||||||| ||| |||||||||||||||| || |||||||| ||||| ||
Sbjct: 215 tactcataaaggcgaccgcgggtagagaagacgatgagtgcaacctcagcatcgcaaaga 156
Query: 995 acggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgc 1054
|| || | ||||| || |||||||| | ||| |||| | |||||||| ||||| ||
Sbjct: 155 acagataattcgtaggctttcttgagcaaaccactgcgccttttgcagaaagtgacttgg 96
Query: 1055 cggctcgtgttgttctcgatcctcttgatctc 1086
|| | ||| |||||||||||| |||||||||
Sbjct: 95 cgattggtggtgttctcgatccgcttgatctc 64
>gb|AY359609.1| Populus tomentosa sex female AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 63.9 bits (32), Expect = 1e-008
Identities = 122/152 (80%)
Strand = Plus / Minus
Query: 935 tactcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagg 994
||||| || ||||| |||||||| |||||||||||||| || |||||||| ||||| ||
Sbjct: 215 tactcataaaggcgtccacggctggagaagacgatgagtgcaacctcagcatcgcaaaga 156
Query: 995 acggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgc 1054
||||| | || || || |||||||| | ||||| || | |||||||| ||||| ||
Sbjct: 155 acggataattcataggctttcttgagcaaaccattccgccttttgcagaaagtgacttgg 96
Query: 1055 cggctcgtgttgttctcgatcctcttgatctc 1086
|| | ||| |||||||||||| |||||||||
Sbjct: 95 cgattggtggtgttctcgatccgcttgatctc 64
>gb|AY359610.1| Populus tomentosa sex female AGAMOUS (AG1) gene, partial cds
Length = 227
Score = 63.9 bits (32), Expect = 1e-008
Identities = 122/152 (80%)
Strand = Plus / Minus
Query: 935 tactcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagg 994
||||| || |||||||| ||| |||||||||||||||| || |||||||| ||||| ||
Sbjct: 215 tactcataaaggcgaccgcgggtagagaagacgatgagtgcaacctcagcatcgcaaaga 156
Query: 995 acggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgc 1054
|| || | ||||| || |||||||| | ||| |||| | |||||||| ||||| ||
Sbjct: 155 acagataattcgtaggctttcttgagcaaaccactgcgccttttgcagaaagtgacttgg 96
Query: 1055 cggctcgtgttgttctcgatcctcttgatctc 1086
|| | ||| |||||||||||| |||||||||
Sbjct: 95 cgattggtggtgttctcgatccgcttgatctc 64
>gb|AF052571.1|AF052571 Populus balsamifera subsp. trichocarpa AGAMOUS homolog (PTAG2) gene,
complete cds
Length = 10007
Score = 56.0 bits (28), Expect = 3e-006
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 935 tactcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgca 990
||||| || ||||| |||||||| |||||||||||||| || |||||||| |||||
Sbjct: 3141 tactcataaaggcgtccacggctggagaagacgatgagtgcaacctcagcatcgca 3086
>gb|AY359612.1| Populus tomentosa sex male AGAMOUS (AG1) gene, partial cds
Length = 227
Score = 56.0 bits (28), Expect = 3e-006
Identities = 121/152 (79%)
Strand = Plus / Minus
Query: 935 tactcgtagaggcgaccacggctagagaagacgatgagggccacctcagcgtcgcagagg 994
||||| || ||||| |||||||| |||||||||||||| || |||||||| || || ||
Sbjct: 215 tactcataaaggcgtccacggctggagaagacgatgagtgcaacctcagcatcacaaaga 156
Query: 995 acggagagctcgtacgccttcttgaggagcccattgcggcgcttgcagaaggtgacctgc 1054
|| || | ||||| || |||||||| | ||| |||| | |||||||| ||||| ||
Sbjct: 155 acagataattcgtaggctttcttgagcaaaccactgcgccttttgcagaaagtgacttgg 96
Query: 1055 cggctcgtgttgttctcgatcctcttgatctc 1086
|| | ||| |||||||||||| |||||||||
Sbjct: 95 cgattggtggtgttctcgatccgcttgatctc 64
>gb|AY359611.1| Populus tomentosa sex male AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 52.0 bits (26), Expect = 5e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 935 tactcgtagaggcgaccacggctagagaagacgatgagggccacctcagc 984
||||| || ||||| |||||||| |||||||||||||| || ||||||||
Sbjct: 215 tactcataaaggcgtccacggctggagaagacgatgagtgcaacctcagc 166
>gb|CN519626.1|CN519626 GQ0104.B3_J10 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0104_J10 5', mRNA sequence
Length = 751
Score = 44.1 bits (22), Expect = 0.012
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 1010 gccttcttgaggagcccattgcggcgcttgcagaaggtgacctgcc 1055
|||||||| |||||||| ||||||||||||||||| |||||||
Sbjct: 156 gccttcttaaggagccctgctcggcgcttgcagaaggtaacctgcc 111
>gb|BU866911.1|BU866911 S072B09 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 519 tggcagctgctgctgctgca 538
||||||||||||||||||||
Sbjct: 514 tggcagctgctgctgctgca 533
>gb|BU879372.1|BU879372 V059D02 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 642
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1073 atcctcttgatctcaatccttcctctacccat 1104
|||||||||||||||||| | ||||| |||||
Sbjct: 105 atcctcttgatctcaatcttacctctccccat 74
>gb|BU879741.1|BU879741 V063H01 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 540
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1073 atcctcttgatctcaatccttcctctacccat 1104
|||||||||||||||||| | ||||| |||||
Sbjct: 118 atcctcttgatctcaatcttacctctccccat 87
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 170,879
Number of Sequences: 369679
Number of extensions: 170879
Number of successful extensions: 53362
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53280
Number of HSP's gapped (non-prelim): 75
length of query: 1221
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1202
effective length of database: 196,384,763
effective search space: 236054485126
effective search space used: 236054485126
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)