BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9009927.2.1
(404 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX183473.1|CX183473 E03_45-16_09.ab1 leaf inoculated wit... 76 1e-012
gb|AY129246.1| Populus x canescens putative MYB transcripti... 66 1e-009
gb|BU876112.1|BU876112 V016C11 Populus flower cDNA library ... 60 7e-008
gb|DT504042.1|DT504042 WS0138.BR_M09 PTxD-IL-FL-A-4 Populus... 60 7e-008
gb|BU837990.1|BU837990 T108C04 Populus apical shoot cDNA li... 56 1e-006
gb|CN520600.1|CN520600 GQ0106.B3_F23 GQ010 Populus trichoca... 56 1e-006
gb|DN500008.1|DN500008 T108C04.5pR Populus shoot meristem c... 56 1e-006
gb|BU887064.1|BU887064 R054B03 Populus root cDNA library Po... 52 2e-005
gb|CX657100.1|CX657100 PO02060B05 Poplar SC cDNA library Po... 52 2e-005
gb|BU829270.1|BU829270 K037P54P Populus apical shoot cDNA l... 48 3e-004
gb|CV282297.1|CV282297 WS0184.B21_D24 PTxD-IL-N-A-9 Populus... 48 3e-004
gb|DT478919.1|DT478919 WS02524.BR_D05 PT-MB-N-A-15 Populus ... 48 3e-004
gb|BU827551.1|BU827551 K004P72P Populus apical shoot cDNA l... 46 0.001
gb|CA930291.1|CA930291 MTU2CA.P9.F12 Aspen apex cDNA Librar... 46 0.001
gb|BU812564.1|BU812564 UL97TH03 Populus leaf cDNA library P... 44 0.004
gb|BU828843.1|BU828843 K029P74P Populus apical shoot cDNA l... 44 0.004
gb|BU891795.1|BU891795 P055C08 Populus petioles cDNA librar... 44 0.004
gb|CA926682.1|CA926682 MTU6CR.P17.H10 Aspen root cDNA Libra... 44 0.004
gb|CN522824.1|CN522824 GQ0122.B3_B22 GQ012 Populus trichoca... 44 0.004
gb|AJ771501.1|AJ771501 AJ771501 Populus euphratica root 3-6... 44 0.004
gb|DN496300.1|DN496300 P055C08.5pR Populus petioles cDNA li... 44 0.004
gb|DT509440.1|DT509440 WS02423.BR_L20 PTxD-ICC-N-A-14 Popul... 44 0.004
gb|DT514054.1|DT514054 WS02423.B21_L20 PTxD-ICC-N-A-14 Popu... 44 0.004
gb|DV464188.1|DV464188 MTUNUL1.P24.C03 NUL Populus fremonti... 44 0.004
gb|BI127494.1|BI127494 G061P44Y Populus cambium cDNA librar... 42 0.016
gb|BU835813.1|BU835813 T079A03 Populus apical shoot cDNA li... 42 0.016
gb|BU868208.1|BU868208 M112E10 Populus flower cDNA library ... 42 0.016
gb|BU887627.1|BU887627 R064D01 Populus root cDNA library Po... 42 0.016
gb|DT525716.1|DT525716 WS02046.C21_B16 PTxN-IB-N-A-11 Popul... 42 0.016
gb|DV465687.1|DV465687 MTUNUL1.P41.G09 NUL Populus fremonti... 42 0.016
gb|BI138326.1|BI138326 F103P52Y Populus flower cDNA library... 40 0.063
gb|BU867210.1|BU867210 S075F04 Populus imbibed seed cDNA li... 40 0.063
gb|CV241047.1|CV241047 WS02511.B21_B06 PT-MB-N-A-15 Populus... 40 0.063
gb|DN493584.1|DN493584 F103P52.5pR Populus flower cDNA libr... 40 0.063
gb|DN498817.1|DN498817 S075F04.5pR Populus imbibed seed cDN... 40 0.063
gb|DT474174.1|DT474174 WS01231.BR_B05 PT-GT-FL-A-3 Populus ... 40 0.063
gb|DT490684.1|DT490684 WS02545.B21_K14 PT-MB-N-A-15 Populus... 40 0.063
gb|BU821159.1|BU821159 UB19CPH02 Populus tremula cambium cD... 38 0.25
gb|BU823267.1|BU823267 UB50DPB09 Populus tremula cambium cD... 38 0.25
gb|CK106404.1|CK106404 UB19CPH02.5pR Populus active cambium... 38 0.25
gb|CK107224.1|CK107224 UB50DPB09.5pR Populus active cambium... 38 0.25
gb|CV244509.1|CV244509 WS0254.B21_N18 PT-MB-N-A-15 Populus ... 38 0.25
gb|CX174518.1|CX174518 F06_69-29_12.ab1 leaf inoculated wit... 38 0.25
gb|DN499701.1|DN499701 T079A03.5pR Populus shoot meristem c... 38 0.25
gb|DT477451.1|DT477451 WS02519.BR_P16 PT-MB-N-A-15 Populus ... 38 0.25
gb|DT483904.1|DT483904 WS02523.B21_O07 PT-MB-N-A-15 Populus... 38 0.25
gb|DT490198.1|DT490198 WS02544.B21_E22 PT-MB-N-A-15 Populus... 38 0.25
gb|DT491763.1|DT491763 WS02548.C21_L11 PT-MB-N-A-15 Populus... 38 0.25
gb|DT507055.1|DT507055 WS02417.BR_D18 PTxD-ICC-N-A-14 Popul... 38 0.25
gb|DT508759.1|DT508759 WS02421.BR_N17 PTxD-ICC-N-A-14 Popul... 38 0.25
gb|DT511716.1|DT511716 WS02417.B21_D18 PTxD-ICC-N-A-14 Popu... 38 0.25
gb|DT513366.1|DT513366 WS02421.B21_N17 PTxD-ICC-N-A-14 Popu... 38 0.25
>gb|CX183473.1|CX183473 E03_45-16_09.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 533
Score = 75.8 bits (38), Expect = 1e-012
Identities = 77/90 (85%)
Strand = Plus / Plus
Query: 186 tgggccgccattgcttcttacctcccgcagagaaccgacaacgacatcaagaactactgg 245
||||| ||||| ||||| || || || |||||||| || || || || ||||||||||||
Sbjct: 227 tgggcagccatagcttcatatcttccccagagaacagataatgatataaagaactactgg 286
Query: 246 aacacccacctcaagaagaagctcaagaag 275
||||||||||| ||||||||||| ||||||
Sbjct: 287 aacacccacctgaagaagaagctaaagaag 316
>gb|AY129246.1| Populus x canescens putative MYB transcription factor (MYB) mRNA,
complete cds
Length = 1367
Score = 65.9 bits (33), Expect = 1e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 216 agaaccgacaacgacatcaagaactactggaacacccacctcaagaaga 264
|||||||||||||| |||||||||||||||||||| ||| ||| |||||
Sbjct: 386 agaaccgacaacgaaatcaagaactactggaacacacacatcaggaaga 434
>gb|BU876112.1|BU876112 V016C11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 619
Score = 60.0 bits (30), Expect = 7e-008
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 234 aagaactactggaacacccacctcaagaagaagctcaagaag 275
||||||||||||||||||||||| |||||||| || ||||||
Sbjct: 339 aagaactactggaacacccacctgaagaagaaactaaagaag 380
>gb|DT504042.1|DT504042 WS0138.BR_M09 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0138_M09 5', mRNA sequence
Length = 879
Score = 60.0 bits (30), Expect = 7e-008
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 234 aagaactactggaacacccacctcaagaagaagctcaagaag 275
||||||||||||||||||||||| |||||||| || ||||||
Sbjct: 511 aagaactactggaacacccacctgaagaagaaactaaagaag 552
>gb|BU837990.1|BU837990 T108C04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 676
Score = 56.0 bits (28), Expect = 1e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 68 gcaagagctgccgcctccgctggaccaactacctccgccc 107
||||||||||||| |||||||||| ||||||||||||||
Sbjct: 193 gcaagagctgccgtctccgctggatgaactacctccgccc 232
>gb|CN520600.1|CN520600 GQ0106.B3_F23 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0106_F23 5', mRNA sequence
Length = 801
Score = 56.0 bits (28), Expect = 1e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 68 gcaagagctgccgcctccgctggaccaactacctccgccc 107
||||||||||||| |||||||||| ||||||||||||||
Sbjct: 327 gcaagagctgccgtctccgctggatgaactacctccgccc 366
>gb|DN500008.1|DN500008 T108C04.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T108C04 5', mRNA sequence
Length = 696
Score = 56.0 bits (28), Expect = 1e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 68 gcaagagctgccgcctccgctggaccaactacctccgccc 107
||||||||||||| |||||||||| ||||||||||||||
Sbjct: 192 gcaagagctgccgtctccgctggatgaactacctccgccc 231
>gb|BU887064.1|BU887064 R054B03 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 674
Score = 52.0 bits (26), Expect = 2e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 228 gacatcaagaactactggaacacccacctcaagaagaa 265
|||||||| ||||||||||||||| | |||||||||||
Sbjct: 450 gacatcaaaaactactggaacaccaagctcaagaagaa 487
>gb|CX657100.1|CX657100 PO02060B05 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02060B05 5', mRNA sequence
Length = 673
Score = 52.0 bits (26), Expect = 2e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| |||||||| ||||||||||||||||||||
Sbjct: 312 gaacagacaacgagatcaagaactactggaacac 345
>gb|BU829270.1|BU829270 K037P54P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 519
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 68 gcaagagctgccgcctccgctggaccaactacctccgccc 107
|||| |||||||| |||||||||| ||||||||||||||
Sbjct: 397 gcaaaagctgccgtctccgctggatgaactacctccgccc 358
>gb|CV282297.1|CV282297 WS0184.B21_D24 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0184_D24 3', mRNA sequence
Length = 857
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 68 gcaagagctgccgcctccgctggaccaactacctccgccc 107
|||| |||||||| |||||||||| ||||||||||||||
Sbjct: 644 gcaaaagctgccgtctccgctggatgaactacctccgccc 683
>gb|DT478919.1|DT478919 WS02524.BR_D05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02524_D05 5', mRNA sequence
Length = 881
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 68 gcaagagctgccgcctccgctggaccaactacctccgccc 107
|||| |||||||| |||||||||| ||||||||||||||
Sbjct: 396 gcaaaagctgccgtctccgctggatgaactacctccgccc 435
>gb|BU827551.1|BU827551 K004P72P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 436
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 216 agaaccgacaacgacatcaagaactactggaacac 250
|||||||| ||||| |||||||| |||||||||||
Sbjct: 267 agaaccgataacgagatcaagaattactggaacac 301
>gb|CA930291.1|CA930291 MTU2CA.P9.F12 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 522
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 216 agaaccgacaacgacatcaagaactactggaacac 250
|||||||| ||||| |||||||| |||||||||||
Sbjct: 307 agaaccgataacgagatcaagaattactggaacac 341
>gb|BU812564.1|BU812564 UL97TH03 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 549
Score = 44.1 bits (22), Expect = 0.004
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| ||||| || ||||||||||||||||||||
Sbjct: 334 gaacagacaatgaaatcaagaactactggaacac 367
>gb|BU828843.1|BU828843 K029P74P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 344
Score = 44.1 bits (22), Expect = 0.004
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| ||||| || ||||||||||||||||||||
Sbjct: 130 gaacagacaatgaaatcaagaactactggaacac 163
>gb|BU891795.1|BU891795 P055C08 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 737
Score = 44.1 bits (22), Expect = 0.004
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| ||||| || ||||||||||||||||||||
Sbjct: 335 gaacagacaatgaaatcaagaactactggaacac 368
>gb|CA926682.1|CA926682 MTU6CR.P17.H10 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 683
Score = 44.1 bits (22), Expect = 0.004
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 217 gaaccgacaacgacatcaagaactactggaacacccacctca 258
|||| ||||| || |||||||||||||||||| |||| ||||
Sbjct: 559 gaactgacaatgaaatcaagaactactggaactcccatctca 518
>gb|CN522824.1|CN522824 GQ0122.B3_B22 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0122_B22 5', mRNA sequence
Length = 511
Score = 44.1 bits (22), Expect = 0.004
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| ||||| || ||||||||||||||||||||
Sbjct: 30 gaacagacaatgaaatcaagaactactggaacac 63
>gb|AJ771501.1|AJ771501 AJ771501 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600002A05F1, mRNA sequence
Length = 588
Score = 44.1 bits (22), Expect = 0.004
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| ||||| || ||||||||||||||||||||
Sbjct: 303 gaacggacaatgaaatcaagaactactggaacac 336
>gb|DN496300.1|DN496300 P055C08.5pR Populus petioles cDNA library Populus tremula cDNA
clone P055C08 5', mRNA sequence
Length = 677
Score = 44.1 bits (22), Expect = 0.004
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| ||||| || ||||||||||||||||||||
Sbjct: 335 gaacagacaatgaaatcaagaactactggaacac 368
>gb|DT509440.1|DT509440 WS02423.BR_L20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_L20 5', mRNA sequence
Length = 767
Score = 44.1 bits (22), Expect = 0.004
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 217 gaaccgacaacgacatcaagaactactggaacacccacctca 258
|||| ||||| || |||||||||||||||||| |||| ||||
Sbjct: 519 gaactgacaatgaaatcaagaactactggaactcccatctca 478
>gb|DT514054.1|DT514054 WS02423.B21_L20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_L20 3', mRNA sequence
Length = 897
Score = 44.1 bits (22), Expect = 0.004
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacacccacctca 258
|||| ||||| || |||||||||||||||||| |||| ||||
Sbjct: 631 gaactgacaatgaaatcaagaactactggaactcccatctca 672
>gb|DV464188.1|DV464188 MTUNUL1.P24.C03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 733
Score = 44.1 bits (22), Expect = 0.004
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 217 gaaccgacaacgacatcaagaactactggaacac 250
|||| ||||| || ||||||||||||||||||||
Sbjct: 354 gaacagacaatgaaatcaagaactactggaacac 387
>gb|BI127494.1|BI127494 G061P44Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 557
Score = 42.1 bits (21), Expect = 0.016
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 68 gcaagagctgccgcctccgctggaccaactacctccg 104
||||||||||||| || |||||||| || ||||||||
Sbjct: 176 gcaagagctgccgtcttcgctggactaattacctccg 212
>gb|BU835813.1|BU835813 T079A03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 464
Score = 42.1 bits (21), Expect = 0.016
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 180 aacaggtgggccgccattgcttcttacctcccgcagagaaccgacaacgacatcaagaac 239
||||||||||| |||||||||||| | || || |||||| || ||||| |||||||||
Sbjct: 255 aacaggtgggcggccattgcttctcaactaccagggagaacagataacgagatcaagaac 314
Query: 240 t 240
|
Sbjct: 315 t 315
>gb|BU868208.1|BU868208 M112E10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 450
Score = 42.1 bits (21), Expect = 0.016
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 68 gcaagagctgccgcctccgctggaccaactacctccg 104
||||||||||||| || |||||||| || ||||||||
Sbjct: 138 gcaagagctgccgtcttcgctggactaattacctccg 174
>gb|BU887627.1|BU887627 R064D01 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 469
Score = 42.1 bits (21), Expect = 0.016
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 68 gcaagagctgccgcctccgctggaccaactacctccg 104
||||||||||||| || |||||||| || ||||||||
Sbjct: 346 gcaagagctgccgtcttcgctggactaattacctccg 382
>gb|DT525716.1|DT525716 WS02046.C21_B16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_B16 3', mRNA sequence
Length = 862
Score = 42.1 bits (21), Expect = 0.016
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 222 gacaacgacatcaagaactactggaacac 250
||||| || ||||||||||||||||||||
Sbjct: 861 gacaatgaaatcaagaactactggaacac 833
>gb|DV465687.1|DV465687 MTUNUL1.P41.G09 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 796
Score = 42.1 bits (21), Expect = 0.016
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 75 ctgccgcctccgctggaccaactacctccgccc 107
|||||| |||||||||| ||||||||||||||
Sbjct: 548 ctgccgtctccgctggatgaactacctccgccc 580
>gb|BI138326.1|BI138326 F103P52Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 500
Score = 40.1 bits (20), Expect = 0.063
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 216 agaaccgacaacgacatcaagaactactggaacacccacctcaagaag 263
||||| ||||| || || || |||| ||||||||||||||| ||||||
Sbjct: 120 agaacagacaatgagataaaaaacttctggaacacccacctgaagaag 167
>gb|BU867210.1|BU867210 S075F04 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 733
Score = 40.1 bits (20), Expect = 0.063
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 215 gagaaccgacaacgacatcaagaactactgga 246
|||||||||||| || ||||||||||| ||||
Sbjct: 406 gagaaccgacaatgaaatcaagaactattgga 437
>gb|CV241047.1|CV241047 WS02511.B21_B06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02511_B06 3', mRNA sequence
Length = 766
Score = 40.1 bits (20), Expect = 0.063
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 231 atcaagaactactggaacacccacctcaagaagaag 266
|||||||||||||||| ||||| |||||||||||
Sbjct: 736 atcaagaactactggaggacccatttcaagaagaag 701
>gb|DN493584.1|DN493584 F103P52.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F103P52 5', mRNA sequence
Length = 542
Score = 40.1 bits (20), Expect = 0.063
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 216 agaaccgacaacgacatcaagaactactggaacacccacctcaagaag 263
||||| ||||| || || || |||| ||||||||||||||| ||||||
Sbjct: 119 agaacagacaatgagataaaaaacttctggaacacccacctgaagaag 166
>gb|DN498817.1|DN498817 S075F04.5pR Populus imbibed seed cDNA library Populus tremula cDNA
clone S075F04 5', mRNA sequence
Length = 743
Score = 40.1 bits (20), Expect = 0.063
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 215 gagaaccgacaacgacatcaagaactactgga 246
|||||||||||| || ||||||||||| ||||
Sbjct: 441 gagaaccgacaatgaaatcaagaactattgga 472
>gb|DT474174.1|DT474174 WS01231.BR_B05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_B05 5', mRNA sequence
Length = 843
Score = 40.1 bits (20), Expect = 0.063
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 216 agaaccgacaacgacatcaagaactactggaacacccacctcaagaag 263
||||| ||||| || || || |||| ||||||||||||||| ||||||
Sbjct: 407 agaacagacaatgagataaaaaacttctggaacacccacctgaagaag 454
>gb|DT490684.1|DT490684 WS02545.B21_K14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02545_K14 3', mRNA sequence
Length = 737
Score = 40.1 bits (20), Expect = 0.063
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 215 gagaaccgacaacgacatcaagaactactgga 246
|||||||||||| || ||||||||||| ||||
Sbjct: 407 gagaaccgacaatgaaatcaagaactattgga 376
>gb|BU821159.1|BU821159 UB19CPH02 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 453
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 216 agaaccgacaacgacatcaagaactactgga 246
||||| ||||| || ||||||||||||||||
Sbjct: 275 agaactgacaatgaaatcaagaactactgga 305
>gb|BU823267.1|BU823267 UB50DPB09 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 591
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 311 ctcctcctcgtcctcctcc 329
|||||||||||||||||||
Sbjct: 210 ctcctcctcgtcctcctcc 192
>gb|CK106404.1|CK106404 UB19CPH02.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB19CPH02 5', mRNA sequence
Length = 564
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 216 agaaccgacaacgacatcaagaactactgga 246
||||| ||||| || ||||||||||||||||
Sbjct: 265 agaactgacaatgaaatcaagaactactgga 295
>gb|CK107224.1|CK107224 UB50DPB09.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB50DPB09 5', mRNA sequence
Length = 304
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 311 ctcctcctcgtcctcctcc 329
|||||||||||||||||||
Sbjct: 224 ctcctcctcgtcctcctcc 206
>gb|CV244509.1|CV244509 WS0254.B21_N18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0254_N18 3', mRNA sequence
Length = 570
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 312 tcctcctcgtcctcctcca 330
|||||||||||||||||||
Sbjct: 460 tcctcctcgtcctcctcca 478
>gb|CX174518.1|CX174518 F06_69-29_12.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 577
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 312 tcctcctcgtcctcctcca 330
|||||||||||||||||||
Sbjct: 194 tcctcctcgtcctcctcca 176
>gb|DN499701.1|DN499701 T079A03.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T079A03 5', mRNA sequence
Length = 490
Score = 38.2 bits (19), Expect = 0.25
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 177 ggcaacaggtgggccgccattgcttct 203
||||||| |||||| ||||||||||||
Sbjct: 262 ggcaacatgtgggcagccattgcttct 288
>gb|DT477451.1|DT477451 WS02519.BR_P16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_P16 5', mRNA sequence
Length = 697
Score = 38.2 bits (19), Expect = 0.25
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 295 tcttcgcaccacccgactcctcctcgtcctcctcc 329
|||||||||| ||| | |||||||||||||||||
Sbjct: 286 tcttcgcaccgccctccgcctcctcgtcctcctcc 252
>gb|DT483904.1|DT483904 WS02523.B21_O07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02523_O07 3', mRNA sequence
Length = 912
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 231 atcaagaactactggaacaccca 253
|||||||| ||||||||||||||
Sbjct: 729 atcaagaattactggaacaccca 707
>gb|DT490198.1|DT490198 WS02544.B21_E22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02544_E22 3', mRNA sequence
Length = 673
Score = 38.2 bits (19), Expect = 0.25
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 216 agaaccgacaacgacatcaagaactactgga 246
||||| ||||| || ||||||||||||||||
Sbjct: 624 agaactgacaatgagatcaagaactactgga 594
>gb|DT491763.1|DT491763 WS02548.C21_L11 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02548_L11 3', mRNA sequence
Length = 823
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 231 atcaagaactactggaacaccca 253
|||||||| ||||||||||||||
Sbjct: 786 atcaagaattactggaacaccca 764
>gb|DT507055.1|DT507055 WS02417.BR_D18 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_D18 5', mRNA sequence
Length = 844
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 311 ctcctcctcgtcctcctcc 329
|||||||||||||||||||
Sbjct: 271 ctcctcctcgtcctcctcc 289
>gb|DT508759.1|DT508759 WS02421.BR_N17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_N17 5', mRNA sequence
Length = 860
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 311 ctcctcctcgtcctcctcc 329
|||||||||||||||||||
Sbjct: 219 ctcctcctcgtcctcctcc 237
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,609
Number of Sequences: 369679
Number of extensions: 44609
Number of successful extensions: 14580
Number of sequences better than 0.5: 52
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14515
Number of HSP's gapped (non-prelim): 65
length of query: 404
length of database: 203,408,664
effective HSP length: 18
effective length of query: 386
effective length of database: 196,754,442
effective search space: 75947214612
effective search space used: 75947214612
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)