BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8636641.2.1
(1326 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX659586.1|CX659586 PO01032E02 Poplar SC cDNA library Po... 64 1e-008
gb|CX659618.1|CX659618 PO01032H06 Poplar SC cDNA library Po... 64 1e-008
gb|AJ776848.1|AJ776848 AJ776848 Populus euphratica root 3-6... 62 6e-008
gb|DT509404.1|DT509404 WS02423.BR_K07 PTxD-ICC-N-A-14 Popul... 56 4e-006
gb|AJ776177.1|AJ776177 AJ776177 Populus euphratica root 3-6... 54 1e-005
gb|BU895108.1|BU895108 X019D05 Populus wood cDNA library Po... 50 2e-004
gb|BU829070.1|BU829070 K034P24P Populus apical shoot cDNA l... 46 0.003
gb|CB176599.1|CB176599 PopSC00020 Poplar SC cDNA library Po... 46 0.003
gb|CX654274.1|CX654274 PO02016H02 Poplar SC cDNA library Po... 46 0.003
gb|CX658068.1|CX658068 PO01008H12 Poplar SC cDNA library Po... 46 0.003
gb|DV464177.1|DV464177 MTUNUL1.P24.B02 NUL Populus fremonti... 46 0.003
gb|DV464446.1|DV464446 MTUNUL1.P27.F07 NUL Populus fremonti... 46 0.003
gb|DV464533.1|DV464533 MTUNUL1.P28.G05 NUL Populus fremonti... 46 0.003
gb|DV466041.1|DV466041 MTUNUL1.P46.E11 NUL Populus fremonti... 46 0.003
dbj|D11102.1|POPPRXA1 Populus kitakamiensis prxA1 gene for ... 46 0.003
gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, compl... 46 0.003
gb|CB239605.1|CB239605 RSH14C06 two-month-old roots from cl... 44 0.014
gb|BU814266.1|BU814266 N027B12 Populus bark cDNA library Po... 42 0.054
gb|BU834793.1|BU834793 T065G06 Populus apical shoot cDNA li... 42 0.054
gb|BU884488.1|BU884488 R011D01 Populus root cDNA library Po... 42 0.054
gb|BU886471.1|BU886471 R046A09 Populus root cDNA library Po... 42 0.054
gb|DN499520.1|DN499520 T065G06.5pR Populus shoot meristem c... 42 0.054
gb|BU880754.1|BU880754 UM54TD07 Populus flower cDNA library... 40 0.21
gb|CX655827.1|CX655827 PO02040F08 Poplar SC cDNA library Po... 40 0.21
gb|CX656525.1|CX656525 PO02056E09 Poplar SC cDNA library Po... 40 0.21
gb|CX656637.1|CX656637 PO02020G06 Poplar SC cDNA library Po... 40 0.21
gb|CX656744.1|CX656744 PO02023E09 Poplar SC cDNA library Po... 40 0.21
gb|CX658157.1|CX658157 PO01010D09 Poplar SC cDNA library Po... 40 0.21
gb|CX658267.1|CX658267 PO01012A07 Poplar SC cDNA library Po... 40 0.21
gb|CX658327.1|CX658327 PO01012G08 Poplar SC cDNA library Po... 40 0.21
gb|CX658380.1|CX658380 PO01034D11 Poplar SC cDNA library Po... 40 0.21
gb|CX659705.1|CX659705 PO01013A02 Poplar SC cDNA library Po... 40 0.21
gb|CX660022.1|CX660022 PO01017A07 Poplar SC cDNA library Po... 40 0.21
dbj|D30652.1|POPPA Populus kitakamiensis mRNA for peroxidas... 40 0.21
emb|X97348.1|PTPXP1PER P.trichocarpa mRNA for anionic perox... 40 0.21
emb|X97349.1|PTPXP2PER P.trichocarpa mRNA for anionic perox... 40 0.21
emb|X97350.1|PTPXP3PER P.trichocarpa mRNA for anionic perox... 40 0.21
dbj|D83225.1|POPP02 Populus nigra peroxidase gene, complete... 40 0.21
>gb|CX659586.1|CX659586 PO01032E02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01032E02 5', mRNA sequence
Length = 623
Score = 63.9 bits (32), Expect = 1e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 179 cgcatgcacttccatgactgctttgtcaggggctgcgatggctc 222
||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 80 cgcatgcacttccatgattgctttgtcaatggctgcgatggctc 123
>gb|CX659618.1|CX659618 PO01032H06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01032H06 5', mRNA sequence
Length = 706
Score = 63.9 bits (32), Expect = 1e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 179 cgcatgcacttccatgactgctttgtcaggggctgcgatggctc 222
||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 80 cgcatgcacttccatgattgctttgtcaatggctgcgatggctc 123
>gb|AJ776848.1|AJ776848 AJ776848 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400019D11F1, mRNA sequence
Length = 549
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 182 atgcacttccatgactgctttgtcaggggctgcgatggctcggtgct 228
|||||||| |||||||||||||| ||||| || ||||||||||||||
Sbjct: 217 atgcactttcatgactgctttgttaggggttgtgatggctcggtgct 263
>gb|DT509404.1|DT509404 WS02423.BR_K07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02423_K07 5', mRNA sequence
Length = 591
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 179 cgcatgcacttccatgactgctttgtcaggggctgcgatggctc 222
||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 225 cgcatgcacttccatgattgctttgtcgatggctgcgatggctc 268
>gb|AJ776177.1|AJ776177 AJ776177 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400010B02F1, mRNA sequence
Length = 508
Score = 54.0 bits (27), Expect = 1e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 182 atgcacttccatgactgctttgtcaggggctgcgatggctcggtgct 228
|||||||| ||||| |||||||| ||||| || ||||||||||||||
Sbjct: 215 atgcactttcatgattgctttgttaggggttgtgatggctcggtgct 261
>gb|BU895108.1|BU895108 X019D05 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 718
Score = 50.1 bits (25), Expect = 2e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 182 atgcacttccatgactgctttgtcaggggctgcgatg 218
||||| |||||||| |||||||||||||| |||||||
Sbjct: 182 atgcatttccatgattgctttgtcaggggttgcgatg 218
>gb|BU829070.1|BU829070 K034P24P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 571
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgtcaggggctgcgatgg 219
|||||||||||||||||||| | |||||||||||
Sbjct: 186 cacttccatgactgctttgttaatggctgcgatgg 220
>gb|CB176599.1|CB176599 PopSC00020 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00020, mRNA sequence
Length = 411
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgtcaggggctgcgatgg 219
|||||||||||||||||||| | |||||||||||
Sbjct: 166 cacttccatgactgctttgttaatggctgcgatgg 200
>gb|CX654274.1|CX654274 PO02016H02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02016H02 5', mRNA sequence
Length = 627
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgtcaggggctgcgatgg 219
|||||||||||||||||||| | |||||||||||
Sbjct: 36 cacttccatgactgctttgttaatggctgcgatgg 70
>gb|CX658068.1|CX658068 PO01008H12 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01008H12 5', mRNA sequence
Length = 589
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgtcaggggctgcgatgg 219
|||||||||||||||||||| | |||||||||||
Sbjct: 94 cacttccatgactgctttgttaatggctgcgatgg 128
>gb|DV464177.1|DV464177 MTUNUL1.P24.B02 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 745
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 182 atgcacttccatgactgctttgtcaggggctgcgatggctcggtgct 228
||||| |||||||| || ||||||||||| ||||||| ||||||||
Sbjct: 232 atgcatttccatgattgttttgtcaggggttgcgatgcatcggtgct 278
>gb|DV464446.1|DV464446 MTUNUL1.P27.F07 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 727
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 182 atgcacttccatgactgctttgtcaggggctgcgatggctcggtgct 228
||||| |||||||| || ||||||||||| ||||||| ||||||||
Sbjct: 236 atgcatttccatgattgttttgtcaggggttgcgatgcatcggtgct 282
>gb|DV464533.1|DV464533 MTUNUL1.P28.G05 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 814
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 182 atgcacttccatgactgctttgtcaggggctgcgatggctcggtgct 228
||||| |||||||| || ||||||||||| ||||||| ||||||||
Sbjct: 178 atgcatttccatgattgttttgtcaggggttgcgatgcatcggtgct 224
>gb|DV466041.1|DV466041 MTUNUL1.P46.E11 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 674
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 182 atgcacttccatgactgctttgtcaggggctgcgatggctcggtgct 228
||||| |||||||| || ||||||||||| ||||||| ||||||||
Sbjct: 321 atgcatttccatgattgttttgtcaggggttgcgatgcatcggtgct 367
>dbj|D11102.1|POPPRXA1 Populus kitakamiensis prxA1 gene for peroxidase, complete cds
Length = 2801
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 179 cgcatgcacttccatgactgctttgtc 205
||||||||||||||||| |||||||||
Sbjct: 945 cgcatgcacttccatgattgctttgtc 971
>gb|AC149540.1| Populus trichocarpa clone Pop1-111J19, complete sequence
Length = 96953
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 179 cgcatgcacttccatgactgctttgtc 205
||||||||||||||||| |||||||||
Sbjct: 65427 cgcatgcacttccatgattgctttgtc 65453
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 86557 cacttccatgactgctttgt 86576
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 79747 cacttccatgactgctttgt 79766
>gb|CB239605.1|CB239605 RSH14C06 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 333
Score = 44.1 bits (22), Expect = 0.014
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 182 atgcacttccatgactgctttgtcaggggctgcgatg 218
||||| |||||||| ||||||||||||| |||||||
Sbjct: 215 atgcatttccatgatngctttgtcaggggttgcgatg 251
>gb|BU814266.1|BU814266 N027B12 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 752
Score = 42.1 bits (21), Expect = 0.054
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 182 atgcacttccatgactgctttgtcaggggctgcgatg 218
|||||||||||||| || ||||| ||||| |||||||
Sbjct: 293 atgcacttccatgattgttttgttaggggttgcgatg 329
>gb|BU834793.1|BU834793 T065G06 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 504
Score = 42.1 bits (21), Expect = 0.054
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 182 atgcacttccatgactgctttgtcaggggctgcgatg 218
|||||||||||||| || ||||| ||||| |||||||
Sbjct: 303 atgcacttccatgattgttttgttaggggttgcgatg 339
>gb|BU884488.1|BU884488 R011D01 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 623
Score = 42.1 bits (21), Expect = 0.054
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 182 atgcacttccatgactgctttgtcaggggctgcgatggctc 222
||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 256 atgcattttcatgactgcttcgtaaggggttgcgatggctc 296
>gb|BU886471.1|BU886471 R046A09 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 528
Score = 42.1 bits (21), Expect = 0.054
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 182 atgcacttccatgactgctttgtcaggggctgcgatggctc 222
||||| || ||||||||||| || ||||| |||||||||||
Sbjct: 256 atgcattttcatgactgcttcgtaaggggttgcgatggctc 296
>gb|DN499520.1|DN499520 T065G06.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T065G06 5', mRNA sequence
Length = 703
Score = 42.1 bits (21), Expect = 0.054
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 182 atgcacttccatgactgctttgtcaggggctgcgatg 218
|||||||||||||| || ||||| ||||| |||||||
Sbjct: 314 atgcacttccatgattgttttgttaggggttgcgatg 350
>gb|BU880754.1|BU880754 UM54TD07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.21
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 191 catgactgctttgtcaggggctgcgatg 218
|||||||| ||||||| |||||||||||
Sbjct: 316 catgactgttttgtcaagggctgcgatg 343
>gb|CX655827.1|CX655827 PO02040F08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02040F08 5', mRNA sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 201 cacttccatgactgctttgt 220
>gb|CX656525.1|CX656525 PO02056E09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02056E09 5', mRNA sequence
Length = 213
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 14 cacttccatgactgctttgt 33
>gb|CX656637.1|CX656637 PO02020G06 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02020G06 5', mRNA sequence
Length = 664
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 201 cacttccatgactgctttgt 220
>gb|CX656744.1|CX656744 PO02023E09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02023E09 5', mRNA sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 146 cacttccatgactgctttgt 165
>gb|CX658157.1|CX658157 PO01010D09 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01010D09 5', mRNA sequence
Length = 505
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 196 cacttccatgactgctttgt 215
>gb|CX658267.1|CX658267 PO01012A07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01012A07 5', mRNA sequence
Length = 596
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 134 cacttccatgactgctttgt 153
>gb|CX658327.1|CX658327 PO01012G08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01012G08 5', mRNA sequence
Length = 596
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 198 cacttccatgactgctttgt 217
>gb|CX658380.1|CX658380 PO01034D11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01034D11 5', mRNA sequence
Length = 712
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 200 cacttccatgactgctttgt 219
>gb|CX659705.1|CX659705 PO01013A02 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01013A02 5', mRNA sequence
Length = 588
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 94 cacttccatgactgctttgt 113
>gb|CX660022.1|CX660022 PO01017A07 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01017A07 5', mRNA sequence
Length = 735
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 93 cacttccatgactgctttgt 112
>dbj|D30652.1|POPPA Populus kitakamiensis mRNA for peroxidase, partial cds, clone pA2a
Length = 1115
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 105 cacttccatgactgctttgt 124
>emb|X97348.1|PTPXP1PER P.trichocarpa mRNA for anionic peroxidase Pxp11
Length = 1461
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 201 cacttccatgactgctttgt 220
>emb|X97349.1|PTPXP2PER P.trichocarpa mRNA for anionic peroxidase Pxp22
Length = 1202
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 199 cacttccatgactgctttgt 218
>emb|X97350.1|PTPXP3PER P.trichocarpa mRNA for anionic peroxidase Pxp3-4
Length = 1222
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 217 cacttccatgactgctttgt 236
>dbj|D83225.1|POPP02 Populus nigra peroxidase gene, complete cds
Length = 1836
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185 cacttccatgactgctttgt 204
||||||||||||||||||||
Sbjct: 276 cacttccatgactgctttgt 295
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,276
Number of Sequences: 369679
Number of extensions: 99276
Number of successful extensions: 26214
Number of sequences better than 0.5: 38
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26135
Number of HSP's gapped (non-prelim): 79
length of query: 1326
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1307
effective length of database: 196,384,763
effective search space: 256674885241
effective search space used: 256674885241
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)