BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8616263.2.1
(509 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK092561.1|CK092561 G087P57.3pR Populus tension wood cDN... 68 4e-010
gb|CK093304.1|CK093304 G114P64.3pR Populus tension wood cDN... 68 4e-010
gb|CK093718.1|CK093718 G130P81.3pR Populus tension wood cDN... 68 4e-010
gb|CF230443.1|CF230443 Ptac0008D7D0707 Poplar cDNA library ... 66 1e-009
gb|DN489617.1|DN489617 T066A07.3pR Populus shoot meristem c... 66 1e-009
gb|DN499521.1|DN499521 T066A07.5pR Populus shoot meristem c... 66 1e-009
gb|CK092163.1|CK092163 G068P49.3pR Populus tension wood cDN... 64 5e-009
gb|CK102193.1|CK102193 G068P49.5pR Populus tension wood cDN... 64 5e-009
gb|CV228782.1|CV228782 WS01911.B21_D14 PT-DX-N-A-10 Populus... 62 2e-008
gb|CK092755.1|CK092755 G093P86.3pR Populus tension wood cDN... 60 9e-008
emb|Y13769.1|PTY13769 Populus trichocarpa mRNA for laccase,... 60 9e-008
emb|Y18217.1|PTR18217 Populus trichocarpa GLac1 gene 60 9e-008
gb|BU834813.1|BU834813 T066A07 Populus apical shoot cDNA li... 58 3e-007
gb|BI127937.1|BI127937 G068P48Y Populus cambium cDNA librar... 56 1e-006
gb|BI127938.1|BI127938 G068P49Y Populus cambium cDNA librar... 56 1e-006
gb|CK093624.1|CK093624 G126P32.3pR Populus tension wood cDN... 56 1e-006
gb|CV229532.1|CV229532 WS01913.B21_J16 PT-DX-N-A-10 Populus... 56 1e-006
gb|CV230947.1|CV230947 WS0193.B21_B09 PT-DX-N-A-10 Populus ... 56 1e-006
gb|CX282659.1|CX282659 18-2.5.6 Populus tremula X Populus a... 56 1e-006
gb|AI166411.1|AI166411 xylem.est.246 Poplar xylem Lambda ZA... 52 2e-005
gb|BU894215.1|BU894215 X004E09 Populus wood cDNA library Po... 52 2e-005
gb|CF235421.1|CF235421 PtaJXT0022F2F0212 Poplar cDNA librar... 52 2e-005
gb|CK089209.1|CK089209 B005P17.3pR Hybrid aspen plasmid lib... 52 2e-005
gb|CK318594.1|CK318594 X9P01a06 Populus stem seasonal libra... 52 2e-005
gb|CK318602.1|CK318602 X9P01b04 Populus stem seasonal libra... 52 2e-005
gb|CV225905.1|CV225905 WS0162.B21_L16 PT-DX-A-7 Populus tri... 52 2e-005
gb|CV226336.1|CV226336 WS0163.B21_P14 PT-DX-A-7 Populus tri... 52 2e-005
gb|CV230874.1|CV230874 WS0192.B21_O04 PT-DX-N-A-10 Populus ... 52 2e-005
gb|CN549675.1|CN549675 GQ0242.B3_G04 GQ024 Populus trichoca... 48 3e-004
gb|DT469776.1|DT469776 WS01918.C21_N18 PT-DX-N-A-10 Populus... 48 3e-004
gb|DT521515.1|DT521515 WS02034.B21_I01 PTxN-IB-N-A-11 Popul... 48 3e-004
gb|CV252649.1|CV252649 PX0015.B21_I08 PT-X-FL-A-1 Populus t... 44 0.005
gb|CV273448.1|CV273448 WS01711.B21_A12 PTxD-NR-A-8 Populus ... 44 0.005
gb|DT500456.1|DT500456 PX0015.BR_I08 PT-X-FL-A-1 Populus tr... 44 0.005
emb|Y13771.1|PTY13771 Populus trichocarpa mRNA for laccase,... 44 0.005
emb|Y18218.1|PTR18218 Populus trichocarpa GLac3 gene 44 0.005
gb|CN550235.1|CN550235 GQ0241.B3_N02 GQ024 Populus trichoca... 42 0.020
gb|CV231858.1|CV231858 WS0195.B21_M10 PT-DX-N-A-10 Populus ... 42 0.020
gb|CV235713.1|CV235713 WS01221.B21_E18 PT-GT-FL-A-3 Populus... 42 0.020
gb|CV236076.1|CV236076 WS01222.B21_L19 PT-GT-FL-A-3 Populus... 42 0.020
emb|Y13773.1|PTY13773 Populus trichocarpa mRNA for laccase,... 42 0.020
gb|CA825674.1|CA825674 R64D08 two-month-old roots from clon... 40 0.079
gb|CV229129.1|CV229129 WS01912.B21_E23 PT-DX-N-A-10 Populus... 40 0.079
emb|Y13770.1|PTY13770 Populus trichocarpa mRNA for laccase,... 40 0.079
>gb|CK092561.1|CK092561 G087P57.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G087P57 3', mRNA sequence
Length = 739
Score = 67.9 bits (34), Expect = 4e-010
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||| |||||| |||||| |||||||||||||||||||||
Sbjct: 392 atgccatcttaagtccccatgtagtgtgcacctccagatggcaatgcatgaaccaaac 449
>gb|CK093304.1|CK093304 G114P64.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G114P64 3', mRNA sequence
Length = 862
Score = 67.9 bits (34), Expect = 4e-010
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||| |||||| |||||| |||||||||||||||||||||
Sbjct: 415 atgccatcttaagtccccatgtagtgtgcacctccagatggcaatgcatgaaccaaac 472
>gb|CK093718.1|CK093718 G130P81.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G130P81 3', mRNA sequence
Length = 828
Score = 67.9 bits (34), Expect = 4e-010
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||| |||||| |||||| |||||||||||||||||||||
Sbjct: 405 atgccatcttaagtccccatgtagtgtgcacctccagatggcaatgcatgaaccaaac 462
>gb|CF230443.1|CF230443 Ptac0008D7D0707 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 649
Score = 65.9 bits (33), Expect = 1e-009
Identities = 114/141 (80%)
Strand = Plus / Minus
Query: 349 aggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccccggggttgtcg 408
|||||||| || ||||| | ||||||||||| |||||||||||||| || || |||||
Sbjct: 594 aggccccaggtggtgtgtacttccaaatggcagtgcatgaaccaaactcctggattgtca 535
Query: 409 gcgaggaagcggatggccacccatccgccggccggcacgccgacggtgttgcgctcgacg 468
|| ||||| || ||||| ||||| ||||| | ||||| || || ||||| | |||| |
Sbjct: 534 gcaaggaaccgtatggcgacccacccgccagatggcacaccaacagtgttcctctcggca 475
Query: 469 gggtcgacgaggttgaacttg 489
||||| || ||||||||||||
Sbjct: 474 gggtcaacaaggttgaacttg 454
>gb|DN489617.1|DN489617 T066A07.3pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T066A07 3', mRNA sequence
Length = 450
Score = 65.9 bits (33), Expect = 1e-009
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccc 397
|||||||| | || ||||||||||| || | ||||||||||||||||||||||||||||
Sbjct: 165 atgccatcttaagtccccatgttgtatggacttccaaatggcaatgcatgaaccaaaccc 224
Query: 398 c 398
|
Sbjct: 225 c 225
>gb|DN499521.1|DN499521 T066A07.5pR Populus shoot meristem cDNA library Populus tremula x
Populus tremuloides cDNA clone T066A07 5', mRNA sequence
Length = 742
Score = 65.9 bits (33), Expect = 1e-009
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaaccc 397
|||||||| | || ||||||||||| || | ||||||||||||||||||||||||||||
Sbjct: 682 atgccatcttaagtccccatgttgtatggacttccaaatggcaatgcatgaaccaaaccc 623
Query: 398 c 398
|
Sbjct: 622 c 622
>gb|CK092163.1|CK092163 G068P49.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G068P49 3', mRNA sequence
Length = 568
Score = 63.9 bits (32), Expect = 5e-009
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 370 tccaaatggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacc 429
||||||||||| |||||||||||||| || || ||||| || ||||| || ||||| |||
Sbjct: 437 tccaaatggcagtgcatgaaccaaactcctggattgtcagcaaggaaccgtatggcgacc 496
Query: 430 catccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttg 489
|| ||||| | ||||| || || ||||| | |||| | ||||| || ||||||||||||
Sbjct: 497 cacccgccagatggcacaccaacagtgttcctctcggcagggtcaacaaggttgaacttg 556
>gb|CK102193.1|CK102193 G068P49.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G068P49 5', mRNA sequence
Length = 445
Score = 63.9 bits (32), Expect = 5e-009
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 370 tccaaatggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacc 429
||||||||||| |||||||||||||| || || ||||| || ||||| || ||||| |||
Sbjct: 132 tccaaatggcagtgcatgaaccaaactcctggattgtcagcaaggaaccgtatggcgacc 73
Query: 430 catccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttg 489
|| ||||| | ||||| || || ||||| | |||| | ||||| || ||||||||||||
Sbjct: 72 cacccgccagatggcacaccaacagtgttcctctcggcagggtcaacaaggttgaacttg 13
>gb|CV228782.1|CV228782 WS01911.B21_D14 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_D14 3', mRNA sequence
Length = 583
Score = 61.9 bits (31), Expect = 2e-008
Identities = 127/159 (79%)
Strand = Plus / Plus
Query: 331 accaaccatgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaac 390
|||| ||| |||||| | |||||||| | ||||| |||||||||| || |||||||||
Sbjct: 416 accacccaagccatcttcaggccccagctggtgtgtacctccaaatgacagtgcatgaac 475
Query: 391 caaaccccggggttgtcggcgaggaagcggatggccacccatccgccggccggcacgccg 450
||||| || || ||||| || ||||| || ||||| ||||| ||||| | ||||| ||
Sbjct: 476 caaactcctggattgtcagcaaggaaccgtatggcgacccacccgccagatggcacacca 535
Query: 451 acggtgttgcgctcgacggggtcgacgaggttgaacttg 489
|| ||||| | |||| | ||||| || ||||||||||||
Sbjct: 536 acagtgttcctctcggcagggtcaacaaggttgaacttg 574
>gb|CK092755.1|CK092755 G093P86.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G093P86 3', mRNA sequence
Length = 516
Score = 60.0 bits (30), Expect = 9e-008
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||| |||||| |||| | |||||||||||||||||||||
Sbjct: 320 atgccatcttaagtccccatgtagtgtgcacctcaagatggcaatgcatgaaccaaac 377
>emb|Y13769.1|PTY13769 Populus trichocarpa mRNA for laccase, lac1 gene, partial
Length = 1589
Score = 60.0 bits (30), Expect = 9e-008
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||| |||||| |||| | |||||||||||||||||||||
Sbjct: 1145 atgccatcttaagtccccatgtagtgtgcacctcgagatggcaatgcatgaaccaaac 1088
>emb|Y18217.1|PTR18217 Populus trichocarpa GLac1 gene
Length = 1620
Score = 60.0 bits (30), Expect = 9e-008
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||| |||||| |||| | |||||||||||||||||||||
Sbjct: 1311 atgccatcttaagtccccatgtagtgtgcacctcgagatggcaatgcatgaaccaaac 1254
>gb|BU834813.1|BU834813 T066A07 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 684
Score = 58.0 bits (29), Expect = 3e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaa 394
|||||||| | || ||||||||||| || | |||||||||||||||||||||||||
Sbjct: 671 atgccatcttaagtccccatgttgtatggacttccaaatggcaatgcatgaaccaaa 615
>gb|BI127937.1|BI127937 G068P48Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 341
Score = 56.0 bits (28), Expect = 1e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 370 tccaaatggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacc 429
||||||||||| |||||||||||||| || || ||||| || ||||| || ||||| |||
Sbjct: 133 tccaaatggcagtgcatgaaccaaactcctggattgtcagcaaggaaccgtatggcgacc 74
Query: 430 catccgcc 437
|| |||||
Sbjct: 73 cacccgcc 66
>gb|BI127938.1|BI127938 G068P49Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 359
Score = 56.0 bits (28), Expect = 1e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 370 tccaaatggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacc 429
||||||||||| |||||||||||||| || || ||||| || ||||| || ||||| |||
Sbjct: 133 tccaaatggcagtgcatgaaccaaactcctggattgtcagcaaggaaccgtatggcgacc 74
Query: 430 catccgcc 437
|| |||||
Sbjct: 73 cacccgcc 66
>gb|CK093624.1|CK093624 G126P32.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G126P32 3', mRNA sequence
Length = 850
Score = 56.0 bits (28), Expect = 1e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 352 ccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| |||||| |||| | |||||||||||||||||||||
Sbjct: 450 ccccatgtagtgtgcacctctagatggcaatgcatgaaccaaac 493
>gb|CV229532.1|CV229532 WS01913.B21_J16 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01913_J16 3', mRNA sequence
Length = 812
Score = 56.0 bits (28), Expect = 1e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 352 ccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| |||||| |||| | |||||||||||||||||||||
Sbjct: 619 ccccatgtagtgtgcacctcaagatggcaatgcatgaaccaaac 576
>gb|CV230947.1|CV230947 WS0193.B21_B09 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_B09 3', mRNA sequence
Length = 895
Score = 56.0 bits (28), Expect = 1e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 352 ccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| |||||| |||| | |||||||||||||||||||||
Sbjct: 506 ccccatgtagtgtgcacctctagatggcaatgcatgaaccaaac 463
>gb|CX282659.1|CX282659 18-2.5.6 Populus tremula X Populus alba developing vegetative bud
cDNA Library Populus alba x Populus tremula cDNA clone
174, mRNA sequence
Length = 134
Score = 56.0 bits (28), Expect = 1e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 352 ccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| |||||| |||| | |||||||||||||||||||||
Sbjct: 131 ccccatgtagtgtgcacctcgagatggcaatgcatgaaccaaac 88
>gb|AI166411.1|AI166411 xylem.est.246 Poplar xylem Lambda ZAPII library Populus trichocarpa
cDNA 5', mRNA sequence
Length = 443
Score = 52.0 bits (26), Expect = 2e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||| |||||| |||| | ||||||||||||||| |||||
Sbjct: 329 atgccatcttaagtccccatgtagtgtgcacctcgagatggcaatgcatgaatcaaac 272
>gb|BU894215.1|BU894215 X004E09 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 649
Score = 52.0 bits (26), Expect = 2e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| |||| |||||||| ||||| | |||||||||||||||| ||||||||
Sbjct: 378 atgccatcttgagtccccatgtcgtgtgtacttccaaatggcaatgcaaaaaccaaac 321
>gb|CF235421.1|CF235421 PtaJXT0022F2F0212 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 552
Score = 52.0 bits (26), Expect = 2e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| |||| |||||||| ||||| | |||||||||||||||| ||||||||
Sbjct: 374 atgccatcttgagtccccatgtcgtgtgtacttccaaatggcaatgcaaaaaccaaac 317
>gb|CK089209.1|CK089209 B005P17.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B005P17 3', mRNA sequence
Length = 531
Score = 52.0 bits (26), Expect = 2e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| |||| |||||||| ||||| | |||||||||||||||| ||||||||
Sbjct: 201 atgccatcttgagtccccatgtcgtgtgtacttccaaatggcaatgcaaaaaccaaac 258
>gb|CK318594.1|CK318594 X9P01a06 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 737
Score = 52.0 bits (26), Expect = 2e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||||||||| | |||||||||||||||| ||||||||
Sbjct: 492 atgccatctttagtccccatgttgtgtgtacttccaaatggcaatgcaaaaaccaaac 435
>gb|CK318602.1|CK318602 X9P01b04 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 672
Score = 52.0 bits (26), Expect = 2e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||||||||| | |||||||||||||||| ||||||||
Sbjct: 492 atgccatctttagtccccatgttgtgtgtacttccaaatggcaatgcaaaaaccaaac 435
>gb|CV225905.1|CV225905 WS0162.B21_L16 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_L16
3', mRNA sequence
Length = 563
Score = 52.0 bits (26), Expect = 2e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||||||||| | |||||||||||||||| ||||||||
Sbjct: 336 atgccatctttagtccccatgttgtgtgtacttccaaatggcaatgcaaaaaccaaac 393
>gb|CV226336.1|CV226336 WS0163.B21_P14 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_P14
3', mRNA sequence
Length = 832
Score = 52.0 bits (26), Expect = 2e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||||||||| | |||||||||||||||| ||||||||
Sbjct: 537 atgccatctttagtccccatgttgtgtgtacttccaaatggcaatgcaaaaaccaaac 594
>gb|CV230874.1|CV230874 WS0192.B21_O04 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0192_O04 3', mRNA sequence
Length = 875
Score = 52.0 bits (26), Expect = 2e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||||||||| | |||||||||||||||| ||||||||
Sbjct: 537 atgccatctttagtccccatgttgtgtgtacttccaaatggcaatgcaaaaaccaaac 594
>gb|CN549675.1|CN549675 GQ0242.B3_G04 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_G04 5', mRNA sequence
Length = 582
Score = 48.1 bits (24), Expect = 3e-004
Identities = 96/120 (80%)
Strand = Plus / Minus
Query: 370 tccaaatggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacc 429
|||||||| || ||||||||||| || || || ||||| || ||||| || ||||| |||
Sbjct: 236 tccaaatgacagtgcatgaaccagactcctggattgtcagcaaggaaccgtatggcgacc 177
Query: 430 catccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttg 489
|| ||||| | ||||| || || ||||| | |||| | ||||| || ||||||||||||
Sbjct: 176 cacccgccagatggcacaccaacagtgttcctctcggcagggtcaacaaggttgaacttg 117
>gb|DT469776.1|DT469776 WS01918.C21_N18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_N18 3', mRNA sequence
Length = 565
Score = 48.1 bits (24), Expect = 3e-004
Identities = 96/120 (80%)
Strand = Plus / Plus
Query: 370 tccaaatggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcggatggccacc 429
|||||||| || ||||||||||| || || || ||||| || ||||| || ||||| |||
Sbjct: 443 tccaaatgacagtgcatgaaccagactcctggattgtcagcaaggaaccgtatggcgacc 502
Query: 430 catccgccggccggcacgccgacggtgttgcgctcgacggggtcgacgaggttgaacttg 489
|| ||||| | ||||| || || ||||| | |||| | ||||| || ||||||||||||
Sbjct: 503 cacccgccagatggcacaccaacagtgttcctctcggcagggtcaacaaggttgaacttg 562
>gb|DT521515.1|DT521515 WS02034.B21_I01 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02034_I01 3', mRNA sequence
Length = 404
Score = 48.1 bits (24), Expect = 3e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 352 ccccatgttgtgtgcgcctccaaatggcaatgcatgaacc 391
|||||||| |||||| |||| | |||||||||||||||||
Sbjct: 364 ccccatgtagtgtgcacctctagatggcaatgcatgaacc 403
>gb|CV252649.1|CV252649 PX0015.B21_I08 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_I08 3', mRNA sequence
Length = 541
Score = 44.1 bits (22), Expect = 0.005
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||| ||||| | |||||||||||||||| ||||||||
Sbjct: 333 atgccatctttagtccccatgtcgtgtgtacttccaaatggcaatgcaaaaaccaaac 390
>gb|CV273448.1|CV273448 WS01711.B21_A12 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS01711_A12 3', mRNA sequence
Length = 529
Score = 44.1 bits (22), Expect = 0.005
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||| ||||| | |||||||||||||||| ||||||||
Sbjct: 326 atgccatctttagtccccatgtcgtgtgtacttccaaatggcaatgcaaaaaccaaac 383
>gb|DT500456.1|DT500456 PX0015.BR_I08 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0015_I08
5', mRNA sequence
Length = 511
Score = 44.1 bits (22), Expect = 0.005
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||| ||||| | |||||||||||||||| ||||||||
Sbjct: 179 atgccatctttagtccccatgtcgtgtgtacttccaaatggcaatgcaaaaaccaaac 122
>emb|Y13771.1|PTY13771 Populus trichocarpa mRNA for laccase, lac3 gene
Length = 1946
Score = 44.1 bits (22), Expect = 0.005
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||| ||||| | |||||||||||||||| ||||||||
Sbjct: 1626 atgccatctttagtccccatgtcgtgtgtacttccaaatggcaatgcaaaaaccaaac 1569
>emb|Y18218.1|PTR18218 Populus trichocarpa GLac3 gene
Length = 3423
Score = 44.1 bits (22), Expect = 0.005
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 338 atgccatcctgaggccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| | || |||||||| ||||| | |||||||||||||||| ||||||||
Sbjct: 3193 atgccatctttagtccccatgtcgtgtgtacttccaaatggcaatgcaaaaaccaaac 3136
>gb|CN550235.1|CN550235 GQ0241.B3_N02 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_N02 5', mRNA sequence
Length = 829
Score = 42.1 bits (21), Expect = 0.020
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 375 atggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcg 419
|||||| ||||||||||| ||||| || ||||| || ||||||||
Sbjct: 665 atggcagtgcatgaaccacacccctggattgtccgctaggaagcg 621
>gb|CV231858.1|CV231858 WS0195.B21_M10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_M10 3', mRNA sequence
Length = 754
Score = 42.1 bits (21), Expect = 0.020
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 375 atggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcg 419
|||||| ||||||||||| ||||| || ||||| || ||||||||
Sbjct: 418 atggcagtgcatgaaccacacccctggattgtccgctaggaagcg 462
>gb|CV235713.1|CV235713 WS01221.B21_E18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01221_E18 3', mRNA sequence
Length = 535
Score = 42.1 bits (21), Expect = 0.020
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 375 atggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcg 419
|||||| ||||||||||| ||||| || ||||| || ||||||||
Sbjct: 414 atggcagtgcatgaaccacacccctggattgtccgctaggaagcg 458
>gb|CV236076.1|CV236076 WS01222.B21_L19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01222_L19 3', mRNA sequence
Length = 541
Score = 42.1 bits (21), Expect = 0.020
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 375 atggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcg 419
|||||| ||||||||||| ||||| || ||||| || ||||||||
Sbjct: 415 atggcagtgcatgaaccacacccctggattgtccgctaggaagcg 459
>emb|Y13773.1|PTY13773 Populus trichocarpa mRNA for laccase, lac110 gene
Length = 2109
Score = 42.1 bits (21), Expect = 0.020
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 375 atggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcg 419
|||||| ||||||||||| ||||| || ||||| || ||||||||
Sbjct: 1704 atggcagtgcatgaaccacacccctggattgtccgctaggaagcg 1660
>gb|CA825674.1|CA825674 R64D08 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 546
Score = 40.1 bits (20), Expect = 0.079
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 373 aaatggcaatgcatgaaccaaaccccggggttgtcggcgaggaagcg 419
|||||||| ||||||||||| | ||| || ||||| || ||||||||
Sbjct: 546 aaatggcagtgcatgaaccacanccctggattgtccgctaggaagcg 500
>gb|CV229129.1|CV229129 WS01912.B21_E23 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01912_E23 3', mRNA sequence
Length = 380
Score = 40.1 bits (20), Expect = 0.079
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 376 tggcaatgcatgaaccaaac 395
||||||||||||||||||||
Sbjct: 1 tggcaatgcatgaaccaaac 20
>emb|Y13770.1|PTY13770 Populus trichocarpa mRNA for laccase, lac2 gene, partial
Length = 1676
Score = 40.1 bits (20), Expect = 0.079
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 352 ccccatgttgtgtgcgcctccaaatggcaatgcatgaaccaaac 395
|||||||| ||||| | |||||||||||||||| ||||||||
Sbjct: 1229 ccccatgtcgtgtgtacttccaaatggcaatgcaaaaaccaaac 1186
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,096
Number of Sequences: 369679
Number of extensions: 51096
Number of successful extensions: 13626
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13566
Number of HSP's gapped (non-prelim): 60
length of query: 509
length of database: 203,408,664
effective HSP length: 19
effective length of query: 490
effective length of database: 196,384,763
effective search space: 96228533870
effective search space used: 96228533870
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)