BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8228901.3.1
(1173 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU870851.1|BU870851 Q019B07 Populus flower cDNA library ... 40 0.19
gb|CN517432.1|CN517432 GQ0093.B3_P02 GQ009 Populus trichoca... 40 0.19
gb|DT506636.1|DT506636 WS02416.BR_B16 PTxD-ICC-N-A-14 Popul... 40 0.19
>gb|BU870851.1|BU870851 Q019B07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 755
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 885 ttcaaagaaaatcttgtttg 904
||||||||||||||||||||
Sbjct: 118 ttcaaagaaaatcttgtttg 99
>gb|CN517432.1|CN517432 GQ0093.B3_P02 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0093_P02 5', mRNA sequence
Length = 594
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 885 ttcaaagaaaatcttgtttg 904
||||||||||||||||||||
Sbjct: 87 ttcaaagaaaatcttgtttg 68
>gb|DT506636.1|DT506636 WS02416.BR_B16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_B16 5', mRNA sequence
Length = 782
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 885 ttcaaagaaaatcttgtttg 904
||||||||||||||||||||
Sbjct: 45 ttcaaagaaaatcttgtttg 26
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 148,220
Number of Sequences: 369679
Number of extensions: 148220
Number of successful extensions: 42318
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42315
Number of HSP's gapped (non-prelim): 3
length of query: 1173
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1154
effective length of database: 196,384,763
effective search space: 226628016502
effective search space used: 226628016502
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)