BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8028975.2.1
(595 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN518016.1|CN518016 GQ0092.B3_C12 GQ009 Populus trichoca... 78 4e-013
gb|CX184992.1|CX184992 C05_45-64_05.ab1 leaf inoculated wit... 70 1e-010
gb|CV233172.1|CV233172 WS0199.B21_N15 PT-DX-N-A-10 Populus ... 64 6e-009
gb|AJ769501.1|AJ769501 AJ769501 Populus euphratica leaf 3-6... 42 0.024
gb|CV254665.1|CV254665 WS0241.B21_N13 PTxD-ICC-N-A-14 Popul... 40 0.093
gb|DT474424.1|DT474424 WS01231.BR_O01 PT-GT-FL-A-3 Populus ... 40 0.093
gb|DT477072.1|DT477072 WS01231.B21_O01 PT-GT-FL-A-3 Populus... 40 0.093
gb|CA825577.1|CA825577 R61H02 two-month-old roots from clon... 38 0.37
>gb|CN518016.1|CN518016 GQ0092.B3_C12 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_C12 5', mRNA sequence
Length = 595
Score = 77.8 bits (39), Expect = 4e-013
Identities = 81/95 (85%)
Strand = Plus / Plus
Query: 5 tatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatt 64
|||||||| || ||||| |||||||| || ||||| ||| ||||||||||||| |||||
Sbjct: 403 tatgtgggtatcgaagtttggcaggtgaaggctggatcaatttttgacaacatattgatc 462
Query: 65 tgcgatgacccagactatgcaagacatgttgtaga 99
|| ||||||||| | ||||||||| | ||||||||
Sbjct: 463 tgtgatgacccacaatatgcaagagaagttgtaga 497
>gb|CX184992.1|CX184992 C05_45-64_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 631
Score = 69.9 bits (35), Expect = 1e-010
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 5 tatgtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatt 64
|||||||| || ||||| |||||||| || || || ||| ||||||||||||| |||||
Sbjct: 53 tatgtgggtatcgaagtttggcaggtgaaggccggatcaatttttgacaacatattgatc 112
Query: 65 tgcgatgacccagactatgcaagacatgttgtaga 99
|| ||||||||| | ||||||||| | ||||||||
Sbjct: 113 tgtgatgacccacaatatgcaagagaagttgtaga 147
>gb|CV233172.1|CV233172 WS0199.B21_N15 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0199_N15 3', mRNA sequence
Length = 564
Score = 63.9 bits (32), Expect = 6e-009
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 8 gtggggattgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgc 67
||||| || ||||| |||||||| || ||||| ||| ||||||||||||| ||||| ||
Sbjct: 563 gtgggtatcgaagtttggcaggtgaaggctggatcaatttttgacaacatattgatctgt 504
Query: 68 gatgacccagactatgcaag 87
||||||||| | ||||||||
Sbjct: 503 gatgacccacaatatgcaag 484
>gb|AJ769501.1|AJ769501 AJ769501 Populus euphratica leaf 3-6 months Populus euphratica cDNA
clone P0001000008D03F1, mRNA sequence
Length = 404
Score = 42.1 bits (21), Expect = 0.024
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 127 tgaaaaggaggcctttgaaggagctgaaa 155
|||||||||||||||||||| ||| ||||
Sbjct: 333 tgaaaaggaggcctttgaagaagcagaaa 361
>gb|CV254665.1|CV254665 WS0241.B21_N13 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0241_N13 3', mRNA sequence
Length = 919
Score = 40.1 bits (20), Expect = 0.093
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 127 tgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
|||||||||||||||||| | ||| |||| || || || ||| ||||||| ||||||||
Sbjct: 446 tgaaaaggaggcctttgaggaagcagaaaaaattagaaaagctcgagaagatgaggaagc 387
>gb|DT474424.1|DT474424 WS01231.BR_O01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_O01 5', mRNA sequence
Length = 687
Score = 40.1 bits (20), Expect = 0.093
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 127 tgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
|||||||||||||||||| | ||| |||| || || || ||| ||||||| ||||||||
Sbjct: 284 tgaaaaggaggcctttgaggaagcagaaaaaattagaaaagctcgagaagatgaggaagc 343
>gb|DT477072.1|DT477072 WS01231.B21_O01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01231_O01 3', mRNA sequence
Length = 687
Score = 40.1 bits (20), Expect = 0.093
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 127 tgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
|||||||||||||||||| | ||| |||| || || || ||| ||||||| ||||||||
Sbjct: 404 tgaaaaggaggcctttgaggaagcagaaaaaattagaaaagctcgagaagatgaggaagc 345
>gb|CA825577.1|CA825577 R61H02 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 370
Score = 38.2 bits (19), Expect = 0.37
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 149 gctgaaagaaagaggaagg 167
|||||||||||||||||||
Sbjct: 26 gctgaaagaaagaggaagg 44
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,900
Number of Sequences: 369679
Number of extensions: 74900
Number of successful extensions: 21573
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21562
Number of HSP's gapped (non-prelim): 11
length of query: 595
length of database: 203,408,664
effective HSP length: 19
effective length of query: 576
effective length of database: 196,384,763
effective search space: 113117623488
effective search space used: 113117623488
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)