BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8011540.2.1
(1916 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK099875.1|CK099875 A087P60.5pR Hybrid aspen plasmid lib... 252 4e-065
gb|CA825083.1|CA825083 R53C06 two-month-old roots from clon... 246 3e-063
gb|AI165643.1|AI165643 A087p60u Hybrid aspen plasmid librar... 192 3e-047
gb|DT486334.1|DT486334 WS02530.B21_L02 PT-MB-N-A-15 Populus... 141 1e-031
gb|BU809323.1|BU809323 UL56PD12 Populus leaf cDNA library P... 119 4e-025
gb|CK319228.1|CK319228 X9P08d02 Populus stem seasonal libra... 117 2e-024
gb|BU882790.1|BU882790 UM82TC10 Populus flower cDNA library... 78 1e-012
gb|CK097231.1|CK097231 UB44DPC03.3pR Populus active cambium... 74 2e-011
gb|BI124996.1|BI124996 I054P16P Populus leaf cDNA library P... 72 9e-011
gb|CK097858.1|CK097858 UB64CPA03.3pR Populus active cambium... 72 9e-011
gb|CK104762.1|CK104762 I054P16.5pR Populus senescing leaves... 72 9e-011
gb|CN550006.1|CN550006 GQ0241.B3_A05 GQ024 Populus trichoca... 72 9e-011
gb|CV264474.1|CV264474 WS02024.B21_K01 PTxN-IB-N-A-11 Popul... 72 9e-011
gb|DN490179.1|DN490179 UB64CPB04.3pR Populus active cambium... 72 9e-011
gb|DT476223.1|DT476223 WS01228.B21_M09 PT-GT-FL-A-3 Populus... 72 9e-011
gb|DT481131.1|DT481131 WS02530.BR_P24 PT-MB-N-A-15 Populus ... 72 9e-011
gb|DT483575.1|DT483575 WS02522.B21_P19 PT-MB-N-A-15 Populus... 72 9e-011
gb|DT486442.1|DT486442 WS02530.B21_P24 PT-MB-N-A-15 Populus... 72 9e-011
gb|DV464291.1|DV464291 MTUNUL1.P25.F07 NUL Populus fremonti... 72 9e-011
gb|DT520921.1|DT520921 WS02448.B21_O17 PTxD-ICC-N-A-14 Popu... 70 3e-010
gb|BF299441.1|BF299441 bd13-1 Poplar first strand cDNA Popu... 66 5e-009
gb|BI129264.1|BI129264 G088P19Y Populus cambium cDNA librar... 62 8e-008
gb|BU810766.1|BU810766 UL76PA02 Populus leaf cDNA library P... 60 3e-007
gb|CF235604.1|CF235604 PtaJXT0024G7G0713 Poplar cDNA librar... 58 1e-006
gb|BI139155.1|BI139155 F125P19Y Populus flower cDNA library... 52 8e-005
gb|BU865328.1|BU865328 S052C02 Populus imbibed seed cDNA li... 52 8e-005
gb|CV242766.1|CV242766 WS02515.B21_P15 PT-MB-N-A-15 Populus... 48 0.001
gb|CX659873.1|CX659873 PO01015C06 Poplar SC cDNA library Po... 48 0.001
gb|BU818675.1|BU818675 UA33CPB10 Populus tremula cambium cD... 44 0.020
gb|BU820720.1|BU820720 UB13CPE02 Populus tremula cambium cD... 44 0.020
gb|BU831638.1|BU831638 T024A04 Populus apical shoot cDNA li... 44 0.020
gb|BU875747.1|BU875747 V010H04 Populus flower cDNA library ... 44 0.020
gb|BU878000.1|BU878000 V041H05 Populus flower cDNA library ... 44 0.020
gb|BU896034.1|BU896034 X034E07 Populus wood cDNA library Po... 44 0.020
gb|CK106227.1|CK106227 UB13CPE02.5pR Populus active cambium... 44 0.020
gb|CN520805.1|CN520805 GQ0107.B3_K24 GQ010 Populus trichoca... 44 0.020
gb|AJ774337.1|AJ774337 AJ774337 Populus euphratica shoot 3-... 44 0.020
gb|AJ775464.1|AJ775464 AJ775464 Populus euphratica shoot 3-... 44 0.020
gb|AJ778897.1|AJ778897 AJ778897 Populus euphratica cambium ... 44 0.020
gb|AJ779852.1|AJ779852 AJ779852 Populus euphratica root 3-6... 44 0.020
gb|DN484001.1|DN484001 PSO205D03 Populus tomentiglandulosa ... 44 0.020
gb|DN494880.1|DN494880 N002A03.5pR Populus bark cDNA librar... 44 0.020
gb|DT474771.1|DT474771 WS0124.BR_P04 PT-GT-FL-A-3 Populus t... 44 0.020
gb|DT526422.1|DT526422 WS02048.C21_A01 PTxN-IB-N-A-11 Popul... 44 0.020
gb|DV464663.1|DV464663 MTUNUL1.P3.C12 NUL Populus fremontii... 44 0.020
gb|BU821827.1|BU821827 UB28CPF09 Populus tremula cambium cD... 42 0.078
gb|CA924885.1|CA924885 MTU7TL.P11.A02 Aspen leaf cDNA Libra... 42 0.078
gb|CF231448.1|CF231448 PtaC0021E7E0709 Poplar cDNA library ... 42 0.078
gb|CK096828.1|CK096828 UB28CPF09.3pR Populus active cambium... 42 0.078
gb|CK097383.1|CK097383 UB49DPC06.3pR Populus active cambium... 42 0.078
gb|AJ771675.1|AJ771675 AJ771675 Populus euphratica root 3-6... 42 0.078
gb|AI164635.1|AI164635 A066P29U Hybrid aspen plasmid librar... 40 0.31
gb|BU813515.1|BU813515 N011D05 Populus bark cDNA library Po... 40 0.31
gb|BU867561.1|BU867561 M101F12 Populus flower cDNA library ... 40 0.31
gb|BU887461.1|BU887461 R061D06 Populus root cDNA library Po... 40 0.31
gb|BU891030.1|BU891030 P045A05 Populus petioles cDNA librar... 40 0.31
gb|CK090702.1|CK090702 F019P26.3pR Populus flower cDNA libr... 40 0.31
gb|CK102705.1|CK102705 G088P19.5pR Populus tension wood cDN... 40 0.31
gb|CV240355.1|CV240355 WS0251.B21_C14 PT-MB-N-A-15 Populus ... 40 0.31
gb|DT473030.1|DT473030 WS01228.BR_F16 PT-GT-FL-A-3 Populus ... 40 0.31
>gb|CK099875.1|CK099875 A087P60.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A087P60 5', mRNA sequence
Length = 618
Score = 252 bits (127), Expect = 4e-065
Identities = 292/347 (84%)
Strand = Plus / Plus
Query: 1472 cttacttgcatgatcactgcgatcctaagatcatccatcgggatgtcaaagctgcaaata 1531
|||| ||||||||||| || || || ||||| || ||||||||||| |||||||||||||
Sbjct: 8 cttatttgcatgatcattgtgacccaaagattattcatcgggatgttaaagctgcaaata 67
Query: 1532 ttcttttggatgaggagtttgaggcagtcgtaggtgatttcgggcttgccaagcttatgg 1591
|| | ||||| ||||| || ||||| || || || ||||| ||||| || || | ||||
Sbjct: 68 ttttgttggacgaggaattcgaggctgttgtcggggattttgggctggcaaaattgatgg 127
Query: 1592 actacaaggatacccatgtcacaactgctgttcgtggaacaattggacacattgctcccg 1651
||||||||||||| |||||||| |||||||| ||||| ||||| |||||||| ||||| |
Sbjct: 128 actacaaggatacgcatgtcaccactgctgtccgtggtacaataggacacatcgctccag 187
Query: 1652 agtacctatccactggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgc 1711
|||||||||| ||||| || || ||||| || || ||||||||||| ||||| |||||||
Sbjct: 188 agtacctatctactggtaaatcatctgagaaaactgatgtttttgggtatggaatcatgc 247
Query: 1712 ttctggagcttattactggacagagggcatttgatctagctcgtcttgcaaatgatgatg 1771
|||||||||| ||||||||||||||||| || || || || || || ||||||||||| |
Sbjct: 248 ttctggagctaattactggacagagggctttcgaccttgcccggctggcaaatgatgacg 307
Query: 1772 atgttatgcttcttgactgggtgaaaggactgctgaaggagaaaaag 1818
|||| ||| | ||||| ||||| |||||||| || ||||||||||||
Sbjct: 308 atgtcatgttacttgattgggtaaaaggacttctcaaggagaaaaag 354
>gb|CA825083.1|CA825083 R53C06 two-month-old roots from clone 'Beaupre' Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 590
Score = 246 bits (124), Expect = 3e-063
Identities = 426/524 (81%), Gaps = 2/524 (0%)
Strand = Plus / Plus
Query: 1046 atgttcctgccgaggaggatccagaagttcatcttggtcagctcaaaaagttttcgttgc 1105
|||| ||||| || || ||||||||||| ||| | || |||||||||| || ||| ||||
Sbjct: 49 atgtacctgctgaagaagatccagaagtccatttgggacagctcaaaaggtattctttgc 108
Query: 1106 gggagcttcaagttgctactgatacttttagtaacaagcacattttaggaagaggtggtt 1165
| || || | ||||| || |||| |||||| |||||| ||||| | || ||||||| |
Sbjct: 109 gagaactactggttgcaacagatagttttagcaacaagaacattcttggccgaggtggat 168
Query: 1166 ttggaaaagtgtacaagggaaggcttgctgatggctcattggtagcagtgaaaagactaa 1225
|||| || |||||||||||| | || ||||||||| ||||||| ||||| |||||||| |
Sbjct: 169 ttggtaaggtgtacaagggacgcctggctgatggcacattggtggcagtaaaaagactga 228
Query: 1226 aagaggagcgcacacctggtggtgagcttcagtttcaaacagaggttgagatgattagca 1285
|||||||||| |||||||| || || | ||||| ||||||||||| || ||||| ||||
Sbjct: 229 aagaggagcggacacctggaggggaattgcagttccaaacagaggtagaaatgatcagca 288
Query: 1286 tggcagtgcacaggaaccttctccgacttcgtggtttctgcatgacacctactgaacggt 1345
|||| ||||| |||| || || || | ||||| || |||||||| || || ||||||
Sbjct: 289 tggctgtgcatcggaatctcctgcggttgcgtgggttttgcatgactccaacggaacggc 348
Query: 1346 tgctggtctacccatacatggctaatggcagtgtggcatcacgtttacgagagcgccagg 1405
|||| || || ||||||||||||||||| ||||| ||||| || || |||| ||||
Sbjct: 349 tgcttgtttatccatacatggctaatggaagtgttgcatcctgtctaagagaacgccccc 408
Query: 1406 catctgaaccacctcttaaatgggaaac-aagaagacggattgcactgggatctgcaaga 1464
|||| ||| | |||||| | |||| ||| | ||||| | |||||| |||| ||||||||
Sbjct: 409 catcagaagcccctcttgattgggcaactaggaaga-gaattgcattggggtctgcaagg 467
Query: 1465 ggtctttcttacttgcatgatcactgcgatcctaagatcatccatcgggatgtcaaagct 1524
||||||||||| |||||||||||||| || || |||||||| ||||| ||||| ||||||
Sbjct: 468 ggtctttcttatttgcatgatcactgtgacccaaagatcattcatcgtgatgtgaaagct 527
Query: 1525 gcaaatattcttttggatgaggagtttgaggcagtcgtaggtga 1568
|||||||| | ||||||||||||||||||||||| || |||||
Sbjct: 528 gcaaatatattattggatgaggagtttgaggcagttgttggtga 571
>gb|AI165643.1|AI165643 A087p60u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 380
Score = 192 bits (97), Expect = 3e-047
Identities = 254/306 (83%), Gaps = 1/306 (0%)
Strand = Plus / Plus
Query: 1513 gatgtcaaagctgcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatttc 1572
||||| ||||||||||||||| | ||||| ||||| || |||| | || || |||||
Sbjct: 1 gatgttaaagctgcaaatattttgttggacgaggaattcgaggntgatgtcggggatttt 60
Query: 1573 gggcttgccaagcttatggactacaaggatacccatgtcacaactgctgttcgtggaaca 1632
||||| | || | ||| ||||||||||||| |||||||| |||||||| ||||| |||
Sbjct: 61 gggctgncaaaattgatgnactacaaggatacgcatgtcaccactgctgt-cgtggtaca 119
Query: 1633 attggacacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatgtt 1692
|| |||||||| ||||| ||||||||||| ||||| || || ||||| || || ||||||
Sbjct: 120 ataggacacatcgctccagagtacctatctactggtaaatcatctgagaaaactgatgtt 179
Query: 1693 tttggatatgggatcatgcttctggagcttattactggacagagggcatttgatctagct 1752
||||| ||||| ||||||||||||||||| ||||||||||||||||| || || || ||
Sbjct: 180 tttgggtatggaatcatgcttctggagctaattactggacagagggctttcgaccttgcc 239
Query: 1753 cgtcttgcaaatgatgatgatgttatgcttcttgactgggtgaaaggactgctgaaggag 1812
|| || ||||||||||| ||||| ||| | ||||| ||||| |||||||| || ||||||
Sbjct: 240 cggctggcaaatgatgacgatgtcatgttacttgattgggtaaaaggacttctcaaggag 299
Query: 1813 aaaaag 1818
||||||
Sbjct: 300 aaaaag 305
>gb|DT486334.1|DT486334 WS02530.B21_L02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_L02 3', mRNA sequence
Length = 834
Score = 141 bits (71), Expect = 1e-031
Identities = 197/239 (82%)
Strand = Plus / Minus
Query: 1594 tacaaggatacccatgtcacaactgctgttcgtggaacaattggacacattgctcccgag 1653
||||| ||||| ||||| || ||||| || ||||| ||||| || || || || ||||||
Sbjct: 829 tacaaagatactcatgttactactgcagtacgtggcacaatagggcatatagcacccgag 770
Query: 1654 tacctatccactggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgctt 1713
|||||||| || || ||||| || || ||||| ||||||||||| ||||| ||||||||
Sbjct: 769 tacctatcaacaggaaagtcttcagagaagactgatgtttttgggtatggagtcatgctt 710
Query: 1714 ctggagcttattactggacagagggcatttgatctagctcgtcttgcaaatgatgatgat 1773
|| || |||||||||||||| ||||| |||||||| ||||| |||||||| ||||| |||
Sbjct: 709 cttgaacttattactggacaaagggcttttgatcttgctcggcttgcaaacgatgacgat 650
Query: 1774 gttatgcttcttgactgggtgaaaggactgctgaaggagaaaaaggtggagatgttggt 1832
|| ||| | ||||| |||||||| ||||| || || || || ||| |||||||| ||||
Sbjct: 649 gtgatgttacttgattgggtgaagggacttctaaaagataagaagttggagatgctggt 591
>gb|BU809323.1|BU809323 UL56PD12 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 418
Score = 119 bits (60), Expect = 4e-025
Identities = 212/263 (80%)
Strand = Plus / Plus
Query: 1472 cttacttgcatgatcactgcgatcctaagatcatccatcgggatgtcaaagctgcaaata 1531
|||| ||||| ||||| || ||||||||||| || || || ||||| |||||||||||||
Sbjct: 156 cttatttgcacgatcattgtgatcctaagattattcaccgcgatgtgaaagctgcaaata 215
Query: 1532 ttcttttggatgaggagtttgaggcagtcgtaggtgatttcgggcttgccaagcttatgg 1591
|| | || |||||||| ||||| ||||| || || ||||| ||| | || || || ||||
Sbjct: 216 ttttgttagatgaggaatttgaagcagttgttggagattttgggttggcaaaactcatgg 275
Query: 1592 actacaaggatacccatgtcacaactgctgttcgtggaacaattggacacattgctcccg 1651
||||||| ||||| ||||| || ||||| || ||||| |||||||| || || || || |
Sbjct: 276 actacaaagatactcatgttactactgcagtacgtggcacaattgggcatatagcacctg 335
Query: 1652 agtacctatccactggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgc 1711
| |||||||| || || ||||| || || ||||| ||||| || || ||||| ||||||
Sbjct: 336 aatacctatcaacaggaaagtcttcagagaagactgatgtnttcgggtatggtgtcatgc 395
Query: 1712 ttctggagcttattactggacag 1734
|||| || ||||| |||||||||
Sbjct: 396 ttctcgaacttatcactggacag 418
Score = 50.1 bits (25), Expect = 3e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 1324 tgcatgacacctactgaacggttgctggtctacccatacatggctaatggcagtgtggca 1383
|||||||| || ||||| ||| ||| ||||| || || ||||||||||| ||||| |||
Sbjct: 8 tgcatgactccaactgagaggtcgcttgtctatccttatatggctaatggaagtgtagca 67
Query: 1384 tcacgtttacgagagcg 1400
||| ||||| |||||||
Sbjct: 68 tcatgtttaagagagcg 84
>gb|CK319228.1|CK319228 X9P08d02 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 598
Score = 117 bits (59), Expect = 2e-024
Identities = 185/227 (81%)
Strand = Plus / Plus
Query: 1606 catgtcacaactgctgttcgtggaacaattggacacattgctcccgagtacctatccact 1665
||||| || ||||| || ||||| |||||||| || || || || || |||||| | ||
Sbjct: 8 catgttactactgcagtacgtggcacaattgggcatatagcacctgaatacctaacaaca 67
Query: 1666 ggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggagcttatt 1725
|| ||||| || || ||||| |||||||| || ||||| |||||||||| || |||||
Sbjct: 68 ggaaagtcttcagagaagactgatgttttcgggtatggtgtcatgcttcttgaacttatc 127
Query: 1726 actggacagagggcatttgatctagctcgtcttgcaaatgatgatgatgttatgcttctt 1785
|||||||||||||| |||||||| ||||| ||||||||||| |||||||| ||| | |||
Sbjct: 128 actggacagagggcttttgatcttgctcggcttgcaaatgacgatgatgtaatgttactt 187
Query: 1786 gactgggtgaaaggactgctgaaggagaaaaaggtggagatgttggt 1832
|| |||||||| ||||| || || || || ||| |||||||| ||||
Sbjct: 188 gattgggtgaagggacttctaaaagataagaagttggagatgctggt 234
>gb|BU882790.1|BU882790 UM82TC10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 546
Score = 77.8 bits (39), Expect = 1e-012
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 1621 gttcgtggaacaattggacacattgctcccgagtacctatccactggcaagtcctctgaa 1680
||||| || ||||| || ||||| || || || ||| |||||||||||||||| ||||||
Sbjct: 357 gttcgcgggacaatgggccacatagcaccagaatacttatccactggcaagtcatctgaa 416
Query: 1681 aagaccgatgtttttggatatgggatcatgcttctggagcttattac 1727
| ||||||||| ||||| ||||| || |||||||| |||||| ||||
Sbjct: 417 aggaccgatgtctttgggtatggtattatgcttctagagcttgttac 463
>gb|CK097231.1|CK097231 UB44DPC03.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB44DPC03 3', mRNA sequence
Length = 671
Score = 73.8 bits (37), Expect = 2e-011
Identities = 127/157 (80%)
Strand = Plus / Minus
Query: 1687 gatgtttttggatatgggatcatgcttctggagcttattactggacagagggcatttgat 1746
||||||||||| ||||| |||||||| | |||||||| ||||||||| |||||||||||
Sbjct: 495 gatgtttttggttatggaatcatgctcttagagcttatcactggacagcgggcatttgat 436
Query: 1747 ctagctcgtcttgcaaatgatgatgatgttatgcttcttgactgggtgaaaggactgctg 1806
| || | ||||| ||| ||||||||| |||||| || || ||||| |||| ||| ||
Sbjct: 435 catgcaaggcttgccaatcatgatgatgctatgctactcgattgggtcaaagcacttcta 376
Query: 1807 aaggagaaaaaggtggagatgttggtggacccagatc 1843
|| ||||| ||| || | ||| |||| || |||||||
Sbjct: 375 aaagagaagaagttgcatatgctggttgatccagatc 339
Score = 46.1 bits (23), Expect = 0.005
Identities = 45/51 (88%), Gaps = 1/51 (1%)
Strand = Plus / Minus
Query: 1588 atggactacaaggatacccatgtcaca-actgctgttcgtggaacaattgg 1637
|||||| |||| ||||||||||||||| | |||||| |||||||| |||||
Sbjct: 596 atggaccacaaagatacccatgtcacagattgctgtacgtggaaccattgg 546
>gb|BI124996.1|BI124996 I054P16P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 517
Score = 71.9 bits (36), Expect = 9e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1660 tccactggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggag 1719
|||||||||||||| ||||||| ||||||||| ||||| ||||| || |||||||| |||
Sbjct: 53 tccactggcaagtcatctgaaaggaccgatgtctttgggtatggtattatgcttctagag 112
Query: 1720 cttattac 1727
||| ||||
Sbjct: 113 cttgttac 120
>gb|CK097858.1|CK097858 UB64CPA03.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB64CPA03 3', mRNA sequence
Length = 904
Score = 71.9 bits (36), Expect = 9e-011
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 1660 tccactggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggag 1719
|||||||||||||| ||||||| ||||||||| ||||| ||||| || |||||||| |||
Sbjct: 584 tccactggcaagtcatctgaaaggaccgatgtctttgggtatggtattatgcttctagag 525
Query: 1720 cttattac 1727
||| ||||
Sbjct: 524 cttgttac 517
>gb|CK104762.1|CK104762 I054P16.5pR Populus senescing leaves cDNA library Populus tremula
cDNA clone I054P16 5', mRNA sequence
Length = 391
Score = 71.9 bits (36), Expect = 9e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1660 tccactggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggag 1719
|||||||||||||| ||||||| ||||||||| ||||| ||||| || |||||||| |||
Sbjct: 94 tccactggcaagtcatctgaaaggaccgatgtctttgggtatggtattatgcttctagag 153
Query: 1720 cttattac 1727
||| ||||
Sbjct: 154 cttgttac 161
>gb|CN550006.1|CN550006 GQ0241.B3_A05 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0241_A05 5', mRNA sequence
Length = 822
Score = 71.9 bits (36), Expect = 9e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1660 tccactggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggag 1719
|||||||||||||| ||||||| ||||||||| ||||| ||||| || |||||||| |||
Sbjct: 387 tccactggcaagtcatctgaaaggaccgatgtctttgggtatggtattatgcttctagag 446
Query: 1720 cttattac 1727
||| ||||
Sbjct: 447 cttgttac 454
>gb|CV264474.1|CV264474 WS02024.B21_K01 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02024_K01 3', mRNA sequence
Length = 721
Score = 71.9 bits (36), Expect = 9e-011
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 1660 tccactggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggag 1719
|||||||||||||| ||||||| ||||||||| ||||| ||||| || |||||||| |||
Sbjct: 706 tccactggcaagtcatctgaaaggaccgatgtctttgggtatggtattatgcttctagag 647
Query: 1720 cttattac 1727
||| ||||
Sbjct: 646 cttgttac 639
>gb|DN490179.1|DN490179 UB64CPB04.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB64CPB04 3', mRNA sequence
Length = 662
Score = 71.9 bits (36), Expect = 9e-011
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 1660 tccactggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggag 1719
|||||||||||||| ||||||| ||||||||| ||||| ||||| || |||||||| |||
Sbjct: 606 tccactggcaagtcatctgaaaggaccgatgtctttgggtatggtattatgcttctagag 547
Query: 1720 cttattac 1727
||| ||||
Sbjct: 546 cttgttac 539
>gb|DT476223.1|DT476223 WS01228.B21_M09 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_M09 3', mRNA sequence
Length = 898
Score = 71.9 bits (36), Expect = 9e-011
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 1660 tccactggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggag 1719
|||||||||||||| ||||||| ||||||||| ||||| ||||| || |||||||| |||
Sbjct: 691 tccactggcaagtcatctgaaaggaccgatgtctttgggtatggtattatgcttctagag 632
Query: 1720 cttattac 1727
||| ||||
Sbjct: 631 cttgttac 624
>gb|DT481131.1|DT481131 WS02530.BR_P24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_P24 5', mRNA sequence
Length = 807
Score = 71.9 bits (36), Expect = 9e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1660 tccactggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggag 1719
|||||||||||||| ||||||| ||||||||| ||||| ||||| || |||||||| |||
Sbjct: 529 tccactggcaagtcatctgaaaggaccgatgtctttgggtatggtattatgcttctagag 588
Query: 1720 cttattac 1727
||| ||||
Sbjct: 589 cttgttac 596
Score = 40.1 bits (20), Expect = 0.31
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 1162 ggttttggaaaagtgtacaagggaaggcttgctgat 1197
|||||||||||||| || |||||| ||||||||||
Sbjct: 31 ggttttggaaaagtttataagggagtgcttgctgat 66
>gb|DT483575.1|DT483575 WS02522.B21_P19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_P19 3', mRNA sequence
Length = 896
Score = 71.9 bits (36), Expect = 9e-011
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 1660 tccactggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggag 1719
|||||||||||||| ||||||| ||||||||| ||||| ||||| || |||||||| |||
Sbjct: 686 tccactggcaagtcatctgaaaggaccgatgtctttgggtatggtattatgcttctagag 627
Query: 1720 cttattac 1727
||| ||||
Sbjct: 626 cttgttac 619
>gb|DT486442.1|DT486442 WS02530.B21_P24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_P24 3', mRNA sequence
Length = 846
Score = 71.9 bits (36), Expect = 9e-011
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 1660 tccactggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggag 1719
|||||||||||||| ||||||| ||||||||| ||||| ||||| || |||||||| |||
Sbjct: 623 tccactggcaagtcatctgaaaggaccgatgtctttgggtatggtattatgcttctagag 564
Query: 1720 cttattac 1727
||| ||||
Sbjct: 563 cttgttac 556
>gb|DV464291.1|DV464291 MTUNUL1.P25.F07 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 905
Score = 71.9 bits (36), Expect = 9e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 1660 tccactggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggag 1719
|||||||||||||| ||||||| ||||||||| ||||| ||||| || |||||||| |||
Sbjct: 521 tccactggcaagtcatctgaaaggaccgatgtctttgggtatggtattatgcttctagag 580
Query: 1720 cttattac 1727
||| ||||
Sbjct: 581 cttgttac 588
>gb|DT520921.1|DT520921 WS02448.B21_O17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_O17 3', mRNA sequence
Length = 495
Score = 69.9 bits (35), Expect = 3e-010
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 358 aacaatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcacgtt 417
||||||||| |||||||||||||| | || ||||| || || || ||||||||||| ||
Sbjct: 324 aacaatgtcctgcagagttgggatcctacccttgtcaacccttgcacatggtttcatgtc 265
Query: 418 acgtgtaacagcgataacagtgttatcagagttgaccttggaaatgc 464
|| ||||||| ||||| ||||| || ||||||| |||||||||||
Sbjct: 264 acatgtaacaatgataatagtgtcatacgagttgatcttggaaatgc 218
>gb|BF299441.1|BF299441 bd13-1 Poplar first strand cDNA Populus trichocarpa x Populus
deltoides cDNA similar to receptor-like kinase, mRNA
sequence
Length = 949
Score = 65.9 bits (33), Expect = 5e-009
Identities = 196/249 (78%), Gaps = 1/249 (0%)
Strand = Plus / Plus
Query: 1474 tacttgcatgatcactgcgatcctaagatcatccatcgggatgtcaaagctgcaaatatt 1533
||||||||||| || ||||| || || || || || || || |||||||| || || |||
Sbjct: 195 tacttgcatgagcaatgcgaccccaaaattattcaccgcgacgtcaaagcagccaacatt 254
Query: 1534 cttttggatgaggagtttgaggcagtcgtaggtgatttcgggcttgccaagcttatggac 1593
| ||||| ||||| ||||||||||| || || ||||| ||||| || |||||| ||||
Sbjct: 255 ttgttggacgaggactttgaggcagtagttggagattttgggctggcaaagcttttggat 314
Query: 1594 tacaaggatacccatgtcacaactgctgttcgtggaacaattggacacattgctcccgag 1653
||| ||| ||||||| || || ||||||||||| || |||| || |||||||| |||
Sbjct: 315 cacagagattcccatgtgaccacagctgttcgtggcaccgttggtcatattgctccggag 374
Query: 1654 tacctatccactggcaagtcctctgaaaagac-cgatgtttttggatatgggatcatgct 1712
|| |||| || || |||| || |||||||| ||||| ||||| | ||||||| ||||
Sbjct: 375 tatttatcaacaggtcagtcatcagaaaagacttgatgtgtttgggtttgggatcttgct 434
Query: 1713 tctggagct 1721
||| |||||
Sbjct: 435 tcttgagct 443
>gb|BI129264.1|BI129264 G088P19Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 430
Score = 61.9 bits (31), Expect = 8e-008
Identities = 112/139 (80%)
Strand = Plus / Plus
Query: 1604 cccatgtcacaactgctgttcgtggaacaattggacacattgctcccgagtacctatcca 1663
||||||| || || ||||||||||| || ||||| || |||||||| ||||| |||| |
Sbjct: 19 cccatgtgactacagctgttcgtggcaccattggtcatattgctccagagtatttatcaa 78
Query: 1664 ctggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggagctta 1723
| || |||| || |||||||| ||||| ||||| | ||||||| ||||||| ||||| |
Sbjct: 79 caggtcagtcatcagaaaagactgatgtgtttgggtttgggatcttgcttcttgagctaa 138
Query: 1724 ttactggacagagggcatt 1742
| || || |||| ||||||
Sbjct: 139 tcacaggtcagaaggcatt 157
>gb|BU810766.1|BU810766 UL76PA02 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 471
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 1678 gaaaagaccgatgtttttggatatgggatcatgcttctggagcttattac 1727
|||| ||| ||||| |||||||||||||| ||||||||||||||| ||||
Sbjct: 64 gaaaggactgatgtctttggatatgggataatgcttctggagcttgttac 113
>gb|CF235604.1|CF235604 PtaJXT0024G7G0713 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 746
Score = 58.0 bits (29), Expect = 1e-006
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 388 cttgttaatccatgtacatggtttcacgttacgtgtaacagcgataacagtgttatcaga 447
||||| || ||||| || |||||||| || || ||||||| ||||| |||||||| |||
Sbjct: 17 cttgtcaacccatgcacgtggtttcatgtcacctgtaacaatgataatagtgttataaga 76
Query: 448 gttgaccttggaaatgc 464
||||| |||||||||||
Sbjct: 77 gttgatcttggaaatgc 93
>gb|BI139155.1|BI139155 F125P19Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 358
Score = 52.0 bits (26), Expect = 8e-005
Identities = 95/118 (80%)
Strand = Plus / Minus
Query: 1604 cccatgtcacaactgctgttcgtggaacaattggacacattgctcccgagtacctatcca 1663
||||||| || || ||||||||||| || |||| || |||||||| ||||| |||| |
Sbjct: 304 cccatgtgaccacagctgttcgtggcaccgttggtcatattgctccggagtatttatcga 245
Query: 1664 ctggcaagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggagct 1721
| || |||| || |||||||| ||||| ||||| | ||||||| ||||||| |||||
Sbjct: 244 caggtcagtcatcagaaaagactgatgtgtttgggtttgggatcttgcttcttgagct 187
>gb|BU865328.1|BU865328 S052C02 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 230
Score = 52.0 bits (26), Expect = 8e-005
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 1507 catcgggatgtcaaagctgcaaatattcttttggatgaggagtttgaggcagtcgtaggt 1566
||||| ||||||||||| || || ||| | ||||||||||| ||||||||||| || ||
Sbjct: 20 catcgtgatgtcaaagcagccaacattttgttggatgaggactttgaggcagttgttgga 79
Query: 1567 gatttcgggcttgccaagcttatgga 1592
||||| ||| | || |||||| ||||
Sbjct: 80 gattttgggttggcaaagcttttgga 105
>gb|CV242766.1|CV242766 WS02515.B21_P15 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_P15 3', mRNA sequence
Length = 717
Score = 48.1 bits (24), Expect = 0.001
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 1618 gctgttcgtggaacaattggacacattgctcccgagtacctatccactggcaagtcctct 1677
||||||||||| || |||| || |||||||| ||||| |||| || || |||| ||
Sbjct: 712 gctgttcgtggcaccgttggtcatattgctccggagtatttatcaacaggtcagtcatca 653
Query: 1678 gaaaagaccgatgtttttggatatgggatcatgcttctggagct 1721
|||||||| ||||| ||||| | ||||||| ||||||| |||||
Sbjct: 652 gaaaagactgatgtgtttgggtttgggatcttgcttcttgagct 609
>gb|CX659873.1|CX659873 PO01015C06 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO01015C06 5', mRNA sequence
Length = 686
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1162 ggttttggaaaagtgtacaagggaaggcttgctgat 1197
|||||||||||||| ||||||||| ||||||||||
Sbjct: 308 ggttttggaaaagtttacaagggagtgcttgctgat 343
>gb|BU818675.1|BU818675 UA33CPB10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 340
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 207 aatgtcctccagagctgggatccgactcttgttaacccttgtacttggtttcac 260
>gb|BU820720.1|BU820720 UB13CPE02 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 424
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 206 aatgtcctccagagctgggatccgactcttgttaacccttgtacttggtttcac 259
>gb|BU831638.1|BU831638 T024A04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 607
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 272 aatgtcctccagagctgggatccgactcttgttaacccttgtacttggtttcac 325
>gb|BU875747.1|BU875747 V010H04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 574
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 247 aatgtcctccagagctgggatccgactcttgttaacccgtgtacttggtttcac 300
>gb|BU878000.1|BU878000 V041H05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 643
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 226 aatgtcctccagagctgggatccgactcttgttaacccgtgtacttggtttcac 279
>gb|BU896034.1|BU896034 X034E07 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 636
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 300 aatgtcctccagagctgggatccgactcttgttaacccttgtacttggtttcac 353
>gb|CK106227.1|CK106227 UB13CPE02.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB13CPE02 5', mRNA sequence
Length = 668
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 217 aatgtcctccagagctgggatccgactcttgttaacccttgtacttggtttcac 270
>gb|CN520805.1|CN520805 GQ0107.B3_K24 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0107_K24 5', mRNA sequence
Length = 804
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 201 aatgtcctccagagctgggatccgactcttgttaacccgtgtacttggtttcac 254
>gb|AJ774337.1|AJ774337 AJ774337 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300016B02F1, mRNA sequence
Length = 562
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 197 aatgtcctccagagctgggatccgactcttgttaacccgtgtacttggtttcac 250
>gb|AJ775464.1|AJ775464 AJ775464 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300032H01F1, mRNA sequence
Length = 596
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 126 aatgtcctccagagctgggatccgactcttgttaacccgtgtacttggtttcac 179
>gb|AJ778897.1|AJ778897 AJ778897 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600008A05F1, mRNA sequence
Length = 566
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 96 aatgtcctccagagctgggatccgactcttgttaacccgtgtacttggtttcac 149
>gb|AJ779852.1|AJ779852 AJ779852 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000800008F04F1, mRNA sequence
Length = 618
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 249 aatgtcctccagagctgggatccgactcttgttaacccgtgtacttggtttcac 302
>gb|DN484001.1|DN484001 PSO205D03 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 1072
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 239 aatgtcctccagagctgggatccgactcttgttaacccttgtacttggtttcac 292
>gb|DN494880.1|DN494880 N002A03.5pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N002A03 5', mRNA sequence
Length = 747
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 229 aatgtcctccagagctgggatccgactcttgttaacccttgtacttggtttcac 282
>gb|DT474771.1|DT474771 WS0124.BR_P04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0124_P04 5', mRNA sequence
Length = 527
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 273 aatgtcctccagagctgggatccgactcttgttaacccgtgtacttggtttcac 326
>gb|DT526422.1|DT526422 WS02048.C21_A01 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02048_A01 3', mRNA sequence
Length = 889
Score = 44.1 bits (22), Expect = 0.020
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 361 aatgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcac 414
|||||| | ||||| |||||| | ||||||||||| || ||||| |||||||||
Sbjct: 809 aatgtcctccagagctgggatccgactcttgttaacccgtgtacttggtttcac 756
>gb|DV464663.1|DV464663 MTUNUL1.P3.C12 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 605
Score = 44.1 bits (22), Expect = 0.020
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 370 cagagttgggattccactcttgttaatccatgtacatggtttcacgttac 419
|||||||||||| | |||||||| ||||| || || |||||||| |||||
Sbjct: 363 cagagttgggatcctactcttgtcaatccctgcacctggtttcatgttac 412
>gb|BU821827.1|BU821827 UB28CPF09 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 417
Score = 42.1 bits (21), Expect = 0.078
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 1651 gagtacctatccactggcaagtcctctgaaaagaccgatgtttttggat 1699
||||| ||||| || ||| |||||||||| || || |||||||||||||
Sbjct: 334 gagtatctatcaacaggccagtcctctgagaaaacagatgtttttggat 382
>gb|CA924885.1|CA924885 MTU7TL.P11.A02 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 271
Score = 42.1 bits (21), Expect = 0.078
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 1651 gagtacctatccactggcaagtcctctgaaaagaccgatgtttttggat 1699
||||| ||||| || ||| |||||||||| || || |||||||||||||
Sbjct: 247 gagtatctatcaacaggccagtcctctgagaaaacagatgtttttggat 199
>gb|CF231448.1|CF231448 PtaC0021E7E0709 Poplar cDNA library from cambial zone Populus alba x
Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 42.1 bits (21), Expect = 0.078
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 1651 gagtacctatccactggcaagtcctctgaaaagaccgatgtttttggat 1699
||||| ||||| || ||| |||||||||| || || |||||||||||||
Sbjct: 107 gagtatctatcaacaggccagtcctctgagaaaacagatgtttttggat 155
>gb|CK096828.1|CK096828 UB28CPF09.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB28CPF09 3', mRNA sequence
Length = 797
Score = 42.1 bits (21), Expect = 0.078
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 1651 gagtacctatccactggcaagtcctctgaaaagaccgatgtttttggat 1699
||||| ||||| || ||| |||||||||| || || |||||||||||||
Sbjct: 625 gagtatctatcaacaggccagtcctctgagaaaacagatgtttttggat 577
>gb|CK097383.1|CK097383 UB49DPC06.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB49DPC06 3', mRNA sequence
Length = 846
Score = 42.1 bits (21), Expect = 0.078
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 1651 gagtacctatccactggcaagtcctctgaaaagaccgatgtttttggat 1699
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Sbjct: 678 gagtatctatcaacaggccagtcctctgagaaaacagatgtttttggat 630
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 235,958
Number of Sequences: 369679
Number of extensions: 235958
Number of successful extensions: 66631
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 59
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 66534
Number of HSP's gapped (non-prelim): 96
length of query: 1916
length of database: 203,408,664
effective HSP length: 20
effective length of query: 1896
effective length of database: 196,015,084
effective search space: 371644599264
effective search space used: 371644599264
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)