BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297817.2.1
(687 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV263950.1|CV263950 WS02023.B21_D13 PTxN-IB-N-A-11 Popul... 44 0.007
gb|CV263491.1|CV263491 WS02022.B21_A02 PTxN-IB-N-A-11 Popul... 42 0.027
gb|BU810800.1|BU810800 UL76PD07 Populus leaf cDNA library P... 40 0.11
gb|BU825693.1|BU825693 UK112TA03 Populus apical shoot cDNA ... 40 0.11
gb|BU828045.1|BU828045 K015P11P Populus apical shoot cDNA l... 40 0.11
gb|BU835493.1|BU835493 T074F03 Populus apical shoot cDNA li... 40 0.11
gb|BU872018.1|BU872018 Q037H07 Populus flower cDNA library ... 40 0.11
gb|BU885168.1|BU885168 R021F02 Populus root cDNA library Po... 40 0.11
gb|CA929980.1|CA929980 MTU2CA.P5.D12 Aspen apex cDNA Librar... 40 0.11
gb|CA930187.1|CA930187 MTU2CA.P8.C10 Aspen apex cDNA Librar... 40 0.11
gb|CK092480.1|CK092480 G085P16.3pR Populus tension wood cDN... 40 0.11
gb|CN519530.1|CN519530 GQ0103.B3_G05 GQ010 Populus trichoca... 40 0.11
gb|CN521335.1|CN521335 GQ0114.B3_O22 GQ011 Populus trichoca... 40 0.11
gb|CV255281.1|CV255281 WS02412.B21_J07 PTxD-ICC-N-A-14 Popu... 40 0.11
gb|CV261572.1|CV261572 WS02017.B21_C14 PTxN-IB-N-A-11 Popul... 40 0.11
gb|CX171372.1|CX171372 C02_69-7_06.ab1 leaf inoculated with... 40 0.11
gb|CX172528.1|CX172528 B03_69-50_03.ab1 leaf inoculated wit... 40 0.11
gb|CX173191.1|CX173191 E09_69-118_09.ab1 leaf inoculated wi... 40 0.11
gb|CX173628.1|CX173628 G07_69-121_13.ab1 leaf inoculated wi... 40 0.11
gb|CX176715.1|CX176715 F12_69-51_12.ab1 leaf inoculated wit... 40 0.11
gb|CX176998.1|CX176998 F07_69-24_11.ab1 leaf inoculated wit... 40 0.11
gb|CX178063.1|CX178063 D07_45-42_07.ab1 leaf inoculated wit... 40 0.11
gb|CX181074.1|CX181074 C03_45-107_05.ab1 leaf inoculated wi... 40 0.11
gb|CX182063.1|CX182063 H10_45-74_16.ab1 leaf inoculated wit... 40 0.11
gb|CX182524.1|CX182524 A04_45-109_02.ab1 leaf inoculated wi... 40 0.11
gb|CX185274.1|CX185274 H10_45-116_16.ab1 leaf inoculated wi... 40 0.11
gb|CX186696.1|CX186696 G12_45-58_14.ab1 leaf inoculated wit... 40 0.11
gb|CX176519.1|CX176519 G09_69-55_13.ab1 leaf inoculated wit... 40 0.11
gb|DN500259.1|DN500259 UK112TA03.5pR Populus apical shoot c... 40 0.11
gb|DN500676.1|DN500676 UL76PD07.5pR Populus cold stressed l... 40 0.11
gb|DT475712.1|DT475712 WS0127.BR_P12 PT-GT-FL-A-3 Populus t... 40 0.11
gb|DT486392.1|DT486392 WS02530.B21_N18 PT-MB-N-A-15 Populus... 40 0.11
gb|DT489196.1|DT489196 WS02538.B21_I22 PT-MB-N-A-15 Populus... 40 0.11
gb|DT501625.1|DT501625 WS01313.BR_I10 PTxD-IL-FL-A-4 Populu... 40 0.11
gb|DT501655.1|DT501655 WS01313.BR_K15 PTxD-IL-FL-A-4 Populu... 40 0.11
gb|DT501692.1|DT501692 WS01313.BR_M24 PTxD-IL-FL-A-4 Populu... 40 0.11
gb|DT501815.1|DT501815 WS01314.BR_E24 PTxD-IL-FL-A-4 Populu... 40 0.11
gb|DT501919.1|DT501919 WS01314.BR_L20 PTxD-IL-FL-A-4 Populu... 40 0.11
gb|DT502722.1|DT502722 WS0134.BR_A06 PTxD-IL-FL-A-4 Populus... 40 0.11
gb|DT503607.1|DT503607 WS0137.BR_D17 PTxD-IL-FL-A-4 Populus... 40 0.11
gb|DT504056.1|DT504056 WS0138.BR_N06 PTxD-IL-FL-A-4 Populus... 40 0.11
gb|DT504091.1|DT504091 WS0138.BR_P15 PTxD-IL-FL-A-4 Populus... 40 0.11
gb|DT516313.1|DT516313 WS02431.B21_A01 PTxD-ICC-N-A-14 Popu... 40 0.11
gb|DT516980.1|DT516980 WS02432.B21_P09 PTxD-ICC-N-A-14 Popu... 40 0.11
gb|DT518011.1|DT518011 WS02435.B21_P04 PTxD-ICC-N-A-14 Popu... 40 0.11
gb|BI120762.1|BI120762 F022P44Y Populus flower cDNA library... 38 0.43
gb|BI139382.1|BI139382 F130P63Y Populus flower cDNA library... 38 0.43
gb|BU834431.1|BU834431 T061B04 Populus apical shoot cDNA li... 38 0.43
gb|BU866813.1|BU866813 S071A09 Populus imbibed seed cDNA li... 38 0.43
gb|BU875506.1|BU875506 V008A05 Populus flower cDNA library ... 38 0.43
gb|BU875632.1|BU875632 V009D08 Populus flower cDNA library ... 38 0.43
gb|CF234528.1|CF234528 Ptajxojxo3H7H0715 Poplar cDNA librar... 38 0.43
gb|CK096463.1|CK096463 UB15CPD05.3pR Populus active cambium... 38 0.43
gb|CK101078.1|CK101078 F019P01.5pR Populus flower cDNA libr... 38 0.43
gb|CK106277.1|CK106277 UB15CPD05.5pR Populus active cambium... 38 0.43
gb|CN517661.1|CN517661 GQ0093.B3_I12 GQ009 Populus trichoca... 38 0.43
gb|CN520307.1|CN520307 GQ0107.B3_N11 GQ010 Populus trichoca... 38 0.43
gb|CN522864.1|CN522864 GQ0123.B3_N20 GQ012 Populus trichoca... 38 0.43
gb|CV226044.1|CV226044 WS0163.B21_C01 PT-DX-A-7 Populus tri... 38 0.43
gb|CV240114.1|CV240114 WS0234.B21_H08 PT-MB-A-13 Populus tr... 38 0.43
gb|CV241609.1|CV241609 WS02512.B21_L11 PT-MB-N-A-15 Populus... 38 0.43
gb|CV256814.1|CV256814 WS0244.B21_N23 PTxD-ICC-N-A-14 Popul... 38 0.43
gb|CV257113.1|CV257113 WS0245.B21_L08 PTxD-ICC-N-A-14 Popul... 38 0.43
gb|BP924209.1|BP924209 BP924209 full-length enriched poplar... 38 0.43
gb|BP929147.1|BP929147 BP929147 full-length enriched poplar... 38 0.43
gb|DN491616.1|DN491616 V008A05.3pR Populus male catkins cDN... 38 0.43
gb|DN498766.1|DN498766 S071A09.5pR Populus imbibed seed cDN... 38 0.43
gb|DT478272.1|DT478272 WS02522.BR_F05 PT-MB-N-A-15 Populus ... 38 0.43
gb|DT480223.1|DT480223 WS02528.BR_E10 PT-MB-N-A-15 Populus ... 38 0.43
gb|DT483340.1|DT483340 WS02522.B21_F05 PT-MB-N-A-15 Populus... 38 0.43
gb|DT489759.1|DT489759 WS02543.B21_B16 PT-MB-N-A-15 Populus... 38 0.43
gb|DT490438.1|DT490438 WS02544.B21_P13 PT-MB-N-A-15 Populus... 38 0.43
gb|DT508192.1|DT508192 WS02420.BR_E24 PTxD-ICC-N-A-14 Popul... 38 0.43
gb|DT512442.1|DT512442 WS02419.B21_E17 PTxD-ICC-N-A-14 Popu... 38 0.43
gb|DT512809.1|DT512809 WS02420.B21_E24 PTxD-ICC-N-A-14 Popu... 38 0.43
gb|DT516972.1|DT516972 WS02432.B21_O23 PTxD-ICC-N-A-14 Popu... 38 0.43
gb|DV463058.1|DV463058 MTUNUL1.P11.B08 NUL Populus fremonti... 38 0.43
>gb|CV263950.1|CV263950 WS02023.B21_D13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_D13 3', mRNA sequence
Length = 491
Score = 44.1 bits (22), Expect = 0.007
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 448 tcctcctcctcttcttcttcct 469
>gb|CV263491.1|CV263491 WS02022.B21_A02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_A02 3', mRNA sequence
Length = 528
Score = 42.1 bits (21), Expect = 0.027
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcc 682
|||||||||||||||||||||
Sbjct: 508 tcctcctcctcttcttcttcc 528
>gb|BU810800.1|BU810800 UL76PD07 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 413
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 303 tcctcctcctcttcttcttc 322
>gb|BU825693.1|BU825693 UK112TA03 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 348
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 216 tcctcctcctcttcttcttc 235
>gb|BU828045.1|BU828045 K015P11P Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 337
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 201 tcctcctcctcttcttcttc 220
>gb|BU835493.1|BU835493 T074F03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 360 tcctcctcctcttcttcttc 341
>gb|BU872018.1|BU872018 Q037H07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 688
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 353 tcctcctcctcttcttcttc 334
>gb|BU885168.1|BU885168 R021F02 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 340 tcctcctcctcttcttcttc 321
>gb|CA929980.1|CA929980 MTU2CA.P5.D12 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 464
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 310 tcctcctcctcttcttcttc 329
>gb|CA930187.1|CA930187 MTU2CA.P8.C10 Aspen apex cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 616
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 310 tcctcctcctcttcttcttc 329
>gb|CK092480.1|CK092480 G085P16.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G085P16 3', mRNA sequence
Length = 582
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 162 tcctcctcctcttcttcttc 143
>gb|CN519530.1|CN519530 GQ0103.B3_G05 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0103_G05 5', mRNA sequence
Length = 500
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 39 tcctcctcctcttcttcttc 58
>gb|CN521335.1|CN521335 GQ0114.B3_O22 GQ011 Populus trichocarpa x Populus deltoides cDNA
clone GQ0114_O22 5', mRNA sequence
Length = 372
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 49 tcctcctcctcttcttcttc 30
>gb|CV255281.1|CV255281 WS02412.B21_J07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02412_J07 3', mRNA sequence
Length = 416
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 317 tcctcctcctcttcttcttc 298
>gb|CV261572.1|CV261572 WS02017.B21_C14 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02017_C14 3', mRNA sequence
Length = 793
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 631 tcctcctcctcttcttcttc 650
>gb|CX171372.1|CX171372 C02_69-7_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 721
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 81 tcctcctcctcttcttcttc 100
>gb|CX172528.1|CX172528 B03_69-50_03.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 701
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 72 tcctcctcctcttcttcttc 91
>gb|CX173191.1|CX173191 E09_69-118_09.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 655
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 71 tcctcctcctcttcttcttc 90
>gb|CX173628.1|CX173628 G07_69-121_13.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 354 tcctcctcctcttcttcttc 335
>gb|CX176715.1|CX176715 F12_69-51_12.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 683
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 47 tcctcctcctcttcttcttc 66
>gb|CX176998.1|CX176998 F07_69-24_11.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 722
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 111 tcctcctcctcttcttcttc 130
>gb|CX178063.1|CX178063 D07_45-42_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 661
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 264 tcctcctcctcttcttcttc 245
>gb|CX181074.1|CX181074 C03_45-107_05.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 670
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 268 tcctcctcctcttcttcttc 249
>gb|CX182063.1|CX182063 H10_45-74_16.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 241 tcctcctcctcttcttcttc 222
>gb|CX182524.1|CX182524 A04_45-109_02.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 505
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 405 tcctcctcctcttcttcttc 424
>gb|CX185274.1|CX185274 H10_45-116_16.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 728
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 281 tcctcctcctcttcttcttc 262
>gb|CX186696.1|CX186696 G12_45-58_14.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 457 tcctcctcctcttcttcttc 438
>gb|CX176519.1|CX176519 G09_69-55_13.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 709
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 73 tcctcctcctcttcttcttc 92
>gb|DN500259.1|DN500259 UK112TA03.5pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone UK112TA03 5', mRNA
sequence
Length = 378
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 220 tcctcctcctcttcttcttc 239
>gb|DN500676.1|DN500676 UL76PD07.5pR Populus cold stressed leaves cDNA library Populus
tremula x Populus tremuloides cDNA clone UL76PD07 5',
mRNA sequence
Length = 826
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 302 tcctcctcctcttcttcttc 321
>gb|DT475712.1|DT475712 WS0127.BR_P12 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0127_P12 5', mRNA sequence
Length = 578
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 326 tcctcctcctcttcttcttc 307
>gb|DT486392.1|DT486392 WS02530.B21_N18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_N18 3', mRNA sequence
Length = 728
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 698 tcctcctcctcttcttcttc 717
>gb|DT489196.1|DT489196 WS02538.B21_I22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02538_I22 3', mRNA sequence
Length = 646
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 452 tcctcctcctcttcttcttc 471
>gb|DT501625.1|DT501625 WS01313.BR_I10 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01313_I10 5', mRNA sequence
Length = 843
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 36 tcctcctcctcttcttcttc 55
>gb|DT501655.1|DT501655 WS01313.BR_K15 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01313_K15 5', mRNA sequence
Length = 810
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 36 tcctcctcctcttcttcttc 55
>gb|DT501692.1|DT501692 WS01313.BR_M24 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01313_M24 5', mRNA sequence
Length = 874
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 36 tcctcctcctcttcttcttc 55
>gb|DT501815.1|DT501815 WS01314.BR_E24 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_E24 5', mRNA sequence
Length = 896
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 38 tcctcctcctcttcttcttc 57
>gb|DT501919.1|DT501919 WS01314.BR_L20 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS01314_L20 5', mRNA sequence
Length = 844
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 36 tcctcctcctcttcttcttc 55
>gb|DT502722.1|DT502722 WS0134.BR_A06 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0134_A06 5', mRNA sequence
Length = 782
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 36 tcctcctcctcttcttcttc 55
>gb|DT503607.1|DT503607 WS0137.BR_D17 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0137_D17 5', mRNA sequence
Length = 941
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 36 tcctcctcctcttcttcttc 55
>gb|DT504056.1|DT504056 WS0138.BR_N06 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0138_N06 5', mRNA sequence
Length = 935
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 36 tcctcctcctcttcttcttc 55
>gb|DT504091.1|DT504091 WS0138.BR_P15 PTxD-IL-FL-A-4 Populus trichocarpa x Populus
deltoides cDNA clone WS0138_P15 5', mRNA sequence
Length = 902
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 36 tcctcctcctcttcttcttc 55
>gb|DT516313.1|DT516313 WS02431.B21_A01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02431_A01 3', mRNA sequence
Length = 847
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 667 tcctcctcctcttcttcttc 686
>gb|DT516980.1|DT516980 WS02432.B21_P09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02432_P09 3', mRNA sequence
Length = 714
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 622 tcctcctcctcttcttcttc 641
>gb|DT518011.1|DT518011 WS02435.B21_P04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_P04 3', mRNA sequence
Length = 895
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 864 tcctcctcctcttcttcttc 845
>gb|BI120762.1|BI120762 F022P44Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 539
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 661 atcctcctcctcttcttct 679
|||||||||||||||||||
Sbjct: 200 atcctcctcctcttcttct 182
>gb|BI139382.1|BI139382 F130P63Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 447
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 663 cctcctcctcttcttcttc 681
|||||||||||||||||||
Sbjct: 271 cctcctcctcttcttcttc 253
>gb|BU834431.1|BU834431 T061B04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 578
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 663 cctcctcctcttcttcttc 681
|||||||||||||||||||
Sbjct: 283 cctcctcctcttcttcttc 265
>gb|BU866813.1|BU866813 S071A09 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 635
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttctt 680
|||||||||||||||||||
Sbjct: 87 tcctcctcctcttcttctt 105
>gb|BU875506.1|BU875506 V008A05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 730
Score = 38.2 bits (19), Expect = 0.43
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 663 cctcctcctcttcttcttc 681
|||||||||||||||||||
Sbjct: 510 cctcctcctcttcttcttc 492
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 92,664
Number of Sequences: 369679
Number of extensions: 92664
Number of successful extensions: 26815
Number of sequences better than 0.5: 77
Number of HSP's better than 0.5 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26657
Number of HSP's gapped (non-prelim): 158
length of query: 687
length of database: 203,408,664
effective HSP length: 19
effective length of query: 668
effective length of database: 196,384,763
effective search space: 131185021684
effective search space used: 131185021684
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)