BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297169.2.1
(545 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF119245.1|CF119245 MTU10CS.P15.D01 Aspen stem cDNA Libr... 82 3e-014
gb|CF119703.1|CF119703 MTU10CS.P5.C08 Aspen stem cDNA Libra... 82 3e-014
gb|BU882011.1|BU882011 UM70TE01 Populus flower cDNA library... 74 6e-012
gb|BU892787.1|BU892787 P069E06 Populus petioles cDNA librar... 74 6e-012
gb|AJ775835.1|AJ775835 AJ775835 Populus euphratica root 3-6... 74 6e-012
gb|CV253010.1|CV253010 PX0019.B21.1_N12 PT-X-FL-A-1 Populus... 74 6e-012
gb|DN501193.1|DN501193 UM70TE01.5pR Populus female catkins ... 74 6e-012
gb|DT500719.1|DT500719 PX0019.BR.1_N12 PT-X-FL-A-1 Populus ... 74 6e-012
gb|DV464422.1|DV464422 MTUNUL1.P27.C10 NUL Populus fremonti... 42 0.022
>gb|CF119245.1|CF119245 MTU10CS.P15.D01 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 816
Score = 81.8 bits (41), Expect = 3e-014
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 271 aggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggc 330
||||| |||||||||||||||||||| || || || |||||||||||||| |||||||||
Sbjct: 411 aggcgggtggagttcaacatcatctcaggaacctcaatgtcctgcccgcatgtgagcggc 470
Query: 331 ctcgc 335
|||||
Sbjct: 471 ctcgc 475
>gb|CF119703.1|CF119703 MTU10CS.P5.C08 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 616
Score = 81.8 bits (41), Expect = 3e-014
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 271 aggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggc 330
||||| |||||||||||||||||||| || || || |||||||||||||| |||||||||
Sbjct: 411 aggcgggtggagttcaacatcatctcaggaacctcaatgtcctgcccgcatgtgagcggc 470
Query: 331 ctcgc 335
|||||
Sbjct: 471 ctcgc 475
>gb|BU882011.1|BU882011 UM70TE01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 553
Score = 73.8 bits (37), Expect = 6e-012
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 271 aggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggc 330
||||| |||||||||||||||||||| || || || ||||||||||| || |||||||||
Sbjct: 218 aggcgggtggagttcaacatcatctcaggaacctcaatgtcctgcccacatgtgagcggc 277
Query: 331 ctcgc 335
|||||
Sbjct: 278 ctcgc 282
>gb|BU892787.1|BU892787 P069E06 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 500
Score = 73.8 bits (37), Expect = 6e-012
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 271 aggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggc 330
||||| |||||||||||||||||||| | || || |||||||||||||| |||||||||
Sbjct: 167 aggcgggtggagttcaacatcatctcacgaacctcaatgtcctgcccgcatgtgagcggc 226
Query: 331 ctcgc 335
|||||
Sbjct: 227 ctcgc 231
>gb|AJ775835.1|AJ775835 AJ775835 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400006B07F1, mRNA sequence
Length = 588
Score = 73.8 bits (37), Expect = 6e-012
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 271 aggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggc 330
||||| |||||||||||||||||||| || || || ||||||||||| || |||||||||
Sbjct: 442 aggcgggtggagttcaacatcatctcaggaacctcaatgtcctgcccacatgtgagcggc 501
Query: 331 ctcgc 335
|||||
Sbjct: 502 ctcgc 506
>gb|CV253010.1|CV253010 PX0019.B21.1_N12 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_N12 3', mRNA sequence
Length = 734
Score = 73.8 bits (37), Expect = 6e-012
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 271 aggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggc 330
||||| |||||||||||||||||||| || || || ||||||||||| || |||||||||
Sbjct: 684 aggcgggtggagttcaacatcatctcaggaacctcaatgtcctgcccacatgtgagcggc 625
Query: 331 ctcgc 335
|||||
Sbjct: 624 ctcgc 620
>gb|DN501193.1|DN501193 UM70TE01.5pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM70TE01 5', mRNA sequence
Length = 679
Score = 73.8 bits (37), Expect = 6e-012
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 271 aggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggc 330
||||| |||||||||||||||||||| || || || ||||||||||| || |||||||||
Sbjct: 218 aggcgggtggagttcaacatcatctcaggaacctcaatgtcctgcccacatgtgagcggc 277
Query: 331 ctcgc 335
|||||
Sbjct: 278 ctcgc 282
>gb|DT500719.1|DT500719 PX0019.BR.1_N12 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_N12 5', mRNA sequence
Length = 684
Score = 73.8 bits (37), Expect = 6e-012
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 271 aggcgcgtggagttcaacatcatctccggcacgtccatgtcctgcccgcacgtgagcggc 330
||||| |||||||||||||||||||| || || || ||||||||||| || |||||||||
Sbjct: 467 aggcgggtggagttcaacatcatctcaggaacctcaatgtcctgcccacatgtgagcggc 526
Query: 331 ctcgc 335
|||||
Sbjct: 527 ctcgc 531
>gb|DV464422.1|DV464422 MTUNUL1.P27.C10 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 770
Score = 42.1 bits (21), Expect = 0.022
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtc 311
|||||||| |||||||| |||||||||||
Sbjct: 665 ttcaacattatctccggtacgtccatgtc 637
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,785
Number of Sequences: 369679
Number of extensions: 25785
Number of successful extensions: 5457
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5447
Number of HSP's gapped (non-prelim): 10
length of query: 545
length of database: 203,408,664
effective HSP length: 19
effective length of query: 526
effective length of database: 196,384,763
effective search space: 103298385338
effective search space used: 103298385338
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)