BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5705822.3.1
(888 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX172344.1|CX172344 E04_69-106_10.ab1 leaf inoculated wi... 64 1e-008
gb|CX174107.1|CX174107 H05_69-28_15.ab1 leaf inoculated wit... 64 1e-008
gb|CX175826.1|CX175826 E09_69-81_09.ab1 leaf inoculated wit... 64 1e-008
gb|AJ771691.1|AJ771691 AJ771691 Populus euphratica root 3-6... 46 0.002
gb|CX186009.1|CX186009 G03_45-53_13.ab1 leaf inoculated wit... 46 0.002
gb|DT472107.1|DT472107 WS01225.BR.1_C23 PT-GT-FL-A-3 Populu... 46 0.002
gb|CK112996.1|CK112996 UR100TD12 Populus root cDNA library ... 44 0.009
gb|CX175489.1|CX175489 B02_69-61_04.ab1 leaf inoculated wit... 44 0.009
gb|DN501426.1|DN501426 UR100TD12.5pR Populus root cDNA libr... 44 0.009
>gb|CX172344.1|CX172344 E04_69-106_10.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 655
Score = 63.9 bits (32), Expect = 1e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 232 taataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcg 291
|||||||||| || ||||||||||| |||||||| ||| ||| |||||||||||||| |
Sbjct: 337 taataaatggaggtatgtgcatgcatgatgaggcagctccacattatattgacatgattg 396
Query: 292 atca 295
||||
Sbjct: 397 atca 400
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 124 gaaagttcatctatgttgagcaggcattcttcca 157
|||||||||| |||||||||||||| ||||||||
Sbjct: 229 gaaagttcatatatgttgagcaggccttcttcca 262
>gb|CX174107.1|CX174107 H05_69-28_15.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 621
Score = 63.9 bits (32), Expect = 1e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 232 taataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcg 291
|||||||||| || ||||||||||| |||||||| ||| ||| |||||||||||||| |
Sbjct: 418 taataaatggaggtatgtgcatgcatgatgaggcagctccacattatattgacatgattg 477
Query: 292 atca 295
||||
Sbjct: 478 atca 481
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 124 gaaagttcatctatgttgagcaggcattcttcca 157
|||||||||| |||||||||||||| ||||||||
Sbjct: 310 gaaagttcatatatgttgagcaggccttcttcca 343
>gb|CX175826.1|CX175826 E09_69-81_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 570
Score = 63.9 bits (32), Expect = 1e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 232 taataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcg 291
|||||||||| || ||||||||||| |||||||| ||| ||| |||||||||||||| |
Sbjct: 355 taataaatggaggtatgtgcatgcatgatgaggcagctccacattatattgacatgattg 414
Query: 292 atca 295
||||
Sbjct: 415 atca 418
Score = 52.0 bits (26), Expect = 4e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 124 gaaagttcatctatgttgagcaggcattcttcca 157
|||||||||| |||||||||||||| ||||||||
Sbjct: 247 gaaagttcatatatgttgagcaggccttcttcca 280
>gb|AJ771691.1|AJ771691 AJ771691 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0001600004E01F1, mRNA sequence
Length = 664
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 666 tttgttgctgcagctgtagcacaggcaaatatcacgaggacaaatcatatcatgt 720
||||||||||| ||| |||| ||||| ||| | || |||||||||||||| ||||
Sbjct: 318 tttgttgctgctgctttagctcaggctaatgtaaccaggacaaatcatataatgt 372
Score = 44.1 bits (22), Expect = 0.009
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 786 attcactatgtgaacaaggatggccgtatccatgctctttattccacaccttccatttat 845
||||| |||||||| ||||||| || || ||||||| ||||| || || |||||||||
Sbjct: 438 attcattatgtgaatcaggatggtcgggtcaatgctctatattcaaccccatccatttat 497
Query: 846 accgat 851
||||||
Sbjct: 498 accgat 503
>gb|CX186009.1|CX186009 G03_45-53_13.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 541
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 666 tttgttgctgcagctgtagcacaggcaaatatcacgaggacaaatcatatcatgt 720
||||||||||| ||| |||| ||||| ||| | || |||||||||||||| ||||
Sbjct: 406 tttgttgctgctgctttagctcaggctaatgtaaccaggacaaatcatataatgt 460
>gb|DT472107.1|DT472107 WS01225.BR.1_C23 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01225_C23 5', mRNA sequence
Length = 908
Score = 46.1 bits (23), Expect = 0.002
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 666 tttgttgctgcagctgtagcacaggcaaatatcacgaggacaaatcatatcatgt 720
||||||||||| ||| |||| ||||| ||| | || |||||||||||||| ||||
Sbjct: 310 tttgttgctgctgctttagctcaggctaatgtaaccaggacaaatcatataatgt 364
>gb|CK112996.1|CK112996 UR100TD12 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone UR100TD12 5', mRNA sequence
Length = 628
Score = 44.1 bits (22), Expect = 0.009
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 786 attcactatgtgaacaaggatggccgtatccatgctctttattccacaccttccatttat 845
||||| |||||||| |||||||||| | ||||||| ||||| || || |||||||||
Sbjct: 13 attcattatgtgaatcaggatggccgggtaaatgctctatattcaaccccatccatttat 72
Query: 846 accgat 851
||||||
Sbjct: 73 accgat 78
>gb|CX175489.1|CX175489 B02_69-61_04.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 473
Score = 44.1 bits (22), Expect = 0.009
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 228 gaattaataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatg 287
||||| |||||||| || ||||||||||| ||||| |||| ||| ||||||||||||
Sbjct: 409 gaattcataaatggggggatgtgcatgcatgatgaagcggtgacacattatattgacatg 468
Query: 288 at 289
||
Sbjct: 469 at 470
>gb|DN501426.1|DN501426 UR100TD12.5pR Populus root cDNA library Populus tremula x Populus
tremuloides cDNA clone UR100TD12 5', mRNA sequence
Length = 564
Score = 44.1 bits (22), Expect = 0.009
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 786 attcactatgtgaacaaggatggccgtatccatgctctttattccacaccttccatttat 845
||||| |||||||| |||||||||| | ||||||| ||||| || || |||||||||
Sbjct: 9 attcattatgtgaatcaggatggccgggtaaatgctctatattcaaccccatccatttat 68
Query: 846 accgat 851
||||||
Sbjct: 69 accgat 74
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 113,609
Number of Sequences: 369679
Number of extensions: 113609
Number of successful extensions: 30291
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30264
Number of HSP's gapped (non-prelim): 26
length of query: 888
length of database: 203,408,664
effective HSP length: 19
effective length of query: 869
effective length of database: 196,384,763
effective search space: 170658359047
effective search space used: 170658359047
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)