BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704661.2.1
(798 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and... 52 3e-005
gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Librar... 48 5e-004
gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Librar... 48 5e-004
gb|CV231822.1|CV231822 WS0195.B21_K18 PT-DX-N-A-10 Populus ... 46 0.002
gb|AF139835.1|AF139835 Populus tremula x Populus tremuloide... 46 0.002
gb|CB176640.1|CB176640 PopSC00063 Poplar SC cDNA library Po... 44 0.008
gb|AF133675.1|AF133675 Populus tremula x Populus tremuloide... 44 0.008
gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Librar... 40 0.13
gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Libr... 40 0.13
gb|CV231975.1|CV231975 WS0196.B21_B22 PT-DX-N-A-10 Populus ... 40 0.13
gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Popul... 40 0.13
gb|BI121973.1|BI121973 F050P47Y Populus flower cDNA library... 38 0.50
gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Libra... 38 0.50
gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Libra... 38 0.50
gb|CK091127.1|CK091127 F050P47.3pR Populus flower cDNA libr... 38 0.50
gb|CK091185.1|CK091185 F056P93.3pR Populus flower cDNA libr... 38 0.50
gb|CK101385.1|CK101385 F050P47.5pR Populus flower cDNA libr... 38 0.50
gb|CX656255.1|CX656255 PO02051A03 Poplar SC cDNA library Po... 38 0.50
>gb|AJ534481.1|AJ534481 AJ534481 Populus euphratica root and shoot Populus euphratica cDNA
clone 46, mRNA sequence
Length = 574
Score = 52.0 bits (26), Expect = 3e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 773 ggtacctgcccgggcggccgctcgaa 798
||||||||||||||||||||||||||
Sbjct: 478 ggtacctgcccgggcggccgctcgaa 503
>gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 733 atctcaggtaggtaaaagcggagatgattgag 764
|||||||| | |||||||||||||||||||||
Sbjct: 38 atctcagggatgtaaaagcggagatgattgag 7
Score = 38.2 bits (19), Expect = 0.50
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 513 attcattccaaaagcccaaacacaagcatgtgggtcaaa 551
|||||||||||| |||||| |||| || || ||||||||
Sbjct: 258 attcattccaaacgcccaaccacatgcctgcgggtcaaa 220
>gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 733 atctcaggtaggtaaaagcggagatgattgag 764
|||||||| | |||||||||||||||||||||
Sbjct: 38 atctcagggatgtaaaagcggagatgattgag 7
Score = 38.2 bits (19), Expect = 0.50
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 513 attcattccaaaagcccaaacacaagcatgtgggtcaaa 551
|||||||||||| |||||| |||| || || ||||||||
Sbjct: 258 attcattccaaacgcccaaccacatgcctgcgggtcaaa 220
>gb|CV231822.1|CV231822 WS0195.B21_K18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_K18 3', mRNA sequence
Length = 740
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 271 ttcatgttgccattgtaatgtat 293
|||||||||||||||||||||||
Sbjct: 479 ttcatgttgccattgtaatgtat 501
>gb|AF139835.1|AF139835 Populus tremula x Populus tremuloides F-box containing protein TIR1
(TIR1) mRNA, complete cds
Length = 2646
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 775 tacctgcccgggcggccgctcga 797
|||||||||||||||||||||||
Sbjct: 65 tacctgcccgggcggccgctcga 43
>gb|CB176640.1|CB176640 PopSC00063 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00063, mRNA sequence
Length = 473
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 733 atctcaggtaggtaaaagcggagatgattg 762
|||||||| | |||||||||||||||||||
Sbjct: 30 atctcagggatgtaaaagcggagatgattg 1
Score = 38.2 bits (19), Expect = 0.50
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 513 attcattccaaaagcccaaacacaagcatgtgggtcaaa 551
|||||||||||| |||||| |||| || || ||||||||
Sbjct: 250 attcattccaaacgcccaaccacatgcctgcgggtcaaa 212
>gb|AF133675.1|AF133675 Populus tremula x Populus tremuloides retinoblastoma-related
protein 1 (RB1) mRNA, complete cds
Length = 3572
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 776 acctgcccgggcggccgctcga 797
||||||||||||||||||||||
Sbjct: 38 acctgcccgggcggccgctcga 17
>gb|CA933471.1|CA933471 MTU5CS.P8.E06 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgc 793
||||||||||||||||||||
Sbjct: 289 gtacctgcccgggcggccgc 270
>gb|CF118925.1|CF118925 MTU10CS.P11.C02 Aspen stem cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 786
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgc 793
||||||||||||||||||||
Sbjct: 656 gtacctgcccgggcggccgc 637
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgc 793
||||||||||||||||||||
Sbjct: 625 gtacctgcccgggcggccgc 644
>gb|CV231975.1|CV231975 WS0196.B21_B22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0196_B22 3', mRNA sequence
Length = 377
Score = 40.1 bits (20), Expect = 0.13
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 271 ttcatgttgccattgtaatgtatgactgcagc 302
|||||||| ||||||||||| ||||| |||||
Sbjct: 308 ttcatgtttccattgtaatgaatgacagcagc 339
>gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_M05 3', mRNA sequence
Length = 718
Score = 40.1 bits (20), Expect = 0.13
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 271 ttcatgttgccattgtaatgtatgactgcagc 302
|||||||| ||||||||||| ||||| |||||
Sbjct: 307 ttcatgtttccattgtaatgaatgacagcagc 338
Score = 38.2 bits (19), Expect = 0.50
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 513 attcattccaaaagcccaaacacaagc 539
|||||| |||||||||||| |||||||
Sbjct: 549 attcatcccaaaagcccaagcacaagc 575
>gb|BI121973.1|BI121973 F050P47Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 312
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 271 ttcatgttgccattgtaat 289
|||||||||||||||||||
Sbjct: 19 ttcatgttgccattgtaat 1
>gb|CA924833.1|CA924833 MTU7TL.P10.B12 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgc 793
|||||||||||||||||||
Sbjct: 529 tacctgcccgggcggccgc 547
>gb|CA925020.1|CA925020 MTU7TL.P12.F05 Aspen leaf cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 568
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 775 tacctgcccgggcggccgc 793
|||||||||||||||||||
Sbjct: 529 tacctgcccgggcggccgc 547
>gb|CK091127.1|CK091127 F050P47.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F050P47 3', mRNA sequence
Length = 499
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 271 ttcatgttgccattgtaat 289
|||||||||||||||||||
Sbjct: 481 ttcatgttgccattgtaat 499
>gb|CK091185.1|CK091185 F056P93.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F056P93 3', mRNA sequence
Length = 724
Score = 38.2 bits (19), Expect = 0.50
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 513 attcattccaaaagcccaaacacaagc 539
|||||| |||||||||||| |||||||
Sbjct: 624 attcatcccaaaagcccaagcacaagc 650
>gb|CK101385.1|CK101385 F050P47.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F050P47 5', mRNA sequence
Length = 244
Score = 38.2 bits (19), Expect = 0.50
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 271 ttcatgttgccattgtaat 289
|||||||||||||||||||
Sbjct: 19 ttcatgttgccattgtaat 1
>gb|CX656255.1|CX656255 PO02051A03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02051A03 5', mRNA sequence
Length = 297
Score = 38.2 bits (19), Expect = 0.50
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 513 attcattccaaaagcccaaacacaagc 539
|||||| |||||||||||| |||||||
Sbjct: 79 attcatcccaaaagcccaagcacaagc 53
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 110,459
Number of Sequences: 369679
Number of extensions: 110459
Number of successful extensions: 30261
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30227
Number of HSP's gapped (non-prelim): 34
length of query: 798
length of database: 203,408,664
effective HSP length: 19
effective length of query: 779
effective length of database: 196,384,763
effective search space: 152983730377
effective search space used: 152983730377
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)