BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704580.2.1
(721 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV267067.1|CV267067 WS02030.B21_L22 PTxN-IB-N-A-11 Popul... 161 5e-038
gb|CX176316.1|CX176316 A01_69-22_01.ab1 leaf inoculated wit... 161 5e-038
gb|BI129397.1|BI129397 G090P20Y Populus cambium cDNA librar... 145 3e-033
gb|DT507040.1|DT507040 WS02417.BR_D03 PTxD-ICC-N-A-14 Popul... 143 1e-032
gb|DT511702.1|DT511702 WS02417.B21_D03 PTxD-ICC-N-A-14 Popu... 143 1e-032
gb|DT519107.1|DT519107 WS02440.B21_E15 PTxD-ICC-N-A-14 Popu... 143 1e-032
gb|DT511227.1|DT511227 WS02429.BR_O08 PTxD-ICC-N-A-14 Popul... 139 2e-031
gb|DT515921.1|DT515921 WS02429.B21.1_O08 PTxD-ICC-N-A-14 Po... 139 2e-031
gb|CK102756.1|CK102756 G090P20.5pR Populus tension wood cDN... 88 5e-016
gb|CX656397.1|CX656397 PO01001C04 Poplar SC cDNA library Po... 78 5e-013
gb|CV228477.1|CV228477 WS01910.B21_E04 PT-DX-N-A-10 Populus... 58 5e-007
gb|BU814683.1|BU814683 N031G09 Populus bark cDNA library Po... 40 0.11
>gb|CV267067.1|CV267067 WS02030.B21_L22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02030_L22 3', mRNA sequence
Length = 889
Score = 161 bits (81), Expect = 5e-038
Identities = 294/365 (80%)
Strand = Plus / Plus
Query: 313 gggttgccatccacaagcgagttctcgtatatctctttgcattcttgtacaacctccttg 372
||||| ||||| ||||| || ||||| |||||||||||||| ||||| | |||||| ||
Sbjct: 361 gggtttccatcaacaagtgaattctcatatatctctttgcactcttgcataacctctttc 420
Query: 373 gcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacctcaggcggg 432
|| ||||| ||| |||||||| |||| | | |||||||| | || ||| |||||||||
Sbjct: 421 gcatccttccgtggtatgccttctcgcagtccaacaagcttttcaacaacttcaggcggg 480
Query: 433 caatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaactctca 492
|| || ||||||||||| || ||||| || || ||||| || ||| ||||||||||||
Sbjct: 481 cagtcgggttgatgttcaagaatatttgtatagatgagtgtgaaggaatccaaactctct 540
Query: 493 gctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttttgtcacg 552
|||||||| || || |||| ||| ||| ||||| ||||| ||||| ||||| | |||
Sbjct: 541 gctgaagcaagttctctcaaatcactcagtatccggactctactttctactttagacact 600
Query: 553 ttgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcctctctatc 612
|||| | ||||||||||| ||||||| ||||||||||||| |||||||| |||||
Sbjct: 601 gtgatatactccctgaagaagtccataataacctcttcatctagcctcatccgttctatt 660
Query: 613 gtttcttcttttatgtagtttttctgagaaaggagatggtcaacatagaccacaattgtt 672
|| ||||| |||||||||||| |||||| || || || ||||| || ||||| ||||||
Sbjct: 661 gtctcttcctttatgtagtttctctgagtcagaaggtgatcaacgtaaaccaccattgtt 720
Query: 673 tcctc 677
|||||
Sbjct: 721 tcctc 725
>gb|CX176316.1|CX176316 A01_69-22_01.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 579
Score = 161 bits (81), Expect = 5e-038
Identities = 294/365 (80%)
Strand = Plus / Minus
Query: 313 gggttgccatccacaagcgagttctcgtatatctctttgcattcttgtacaacctccttg 372
||||| ||||| ||||| || ||||| |||||||||||||| ||||| | |||||| ||
Sbjct: 427 gggtttccatcaacaagtgaattctcatatatctctttgcactcttgcataacctctttc 368
Query: 373 gcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacctcaggcggg 432
|| ||||| ||| |||||||| |||| | | |||||||| | || ||| ||||| |||
Sbjct: 367 gcatccttccgtggtatgccttctcgcagtccaacaagcttttcaacaacttcaggtggg 308
Query: 433 caatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaactctca 492
|| || ||||||||||| || ||||| || || |||||||| ||| ||||||||||||
Sbjct: 307 cagtcgggttgatgttcgagaatatttgtatagatgagagtgaaggaatccaaactctct 248
Query: 493 gctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttttgtcacg 552
|||||||| || || |||| ||| ||| ||||| ||||| ||||| ||||| | |||
Sbjct: 247 gctgaagcaagttctctcaaatcactcagtatccggactctactttctactttagacact 188
Query: 553 ttgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcctctctatc 612
|||| | ||||||||||| ||||||| ||||||||||||| |||||||| |||||
Sbjct: 187 gtgatatactccctgaagaagtccataataacctcttcatctagcctcatccgttctatt 128
Query: 613 gtttcttcttttatgtagtttttctgagaaaggagatggtcaacatagaccacaattgtt 672
|| ||||| |||||||||||| |||||| || || || ||||| || ||||| ||||||
Sbjct: 127 gtctcttcctttatgtagtttctctgagtcagaaggtgatcaacgtaaaccaccattgtt 68
Query: 673 tcctc 677
|||||
Sbjct: 67 tcctc 63
>gb|BI129397.1|BI129397 G090P20Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 474
Score = 145 bits (73), Expect = 3e-033
Identities = 271/337 (80%)
Strand = Plus / Minus
Query: 341 atatctctttgcattcttgtacaacctccttggcttccttttttggaatgccttcccgca 400
||||||||||||| ||||| | |||||| || || ||||| ||| |||||||| ||||
Sbjct: 474 atatctctttgcactcttgcataacctctttcgcatccttccgtggtatgccttctcgca 415
Query: 401 ttgccacaagcttataaaaaacctcaggcgggcaatcaggttgatgttccagtatattag 460
| | |||||||| | || ||| ||||||||||| || ||||||||||| || ||||| |
Sbjct: 414 gtccaacaagcttttcaacaacttcaggcgggcagtcgggttgatgttcaagaatatttg 355
Query: 461 tgtaaatgagagtaaagctatccaaactctcagctgaagctagctccctcatatctgcca 520
| || |||||||| ||| ||||| |||||| |||||||| || || |||| ||| ||
Sbjct: 354 tatagatgagagtgaaggaatccagactctctgctgaagcaagttctctcaaatcactca 295
Query: 521 gaatccgcactctgctttcaacttttgtcacgttgatgtgttccctgaagaaatccataa 580
| ||||| ||||| ||||| ||||| | ||| |||| | ||||||||||| |||||||
Sbjct: 294 gtatccggactctactttctactttagacactgtgatatactccctgaagaagtccataa 235
Query: 581 gcacctcttcatctaacctcatcctctctatcgtttcttcttttatgtagtttttctgag 640
||||||||||||| |||||||| ||||| || ||||| |||||||||||| ||||||
Sbjct: 234 taacctcttcatctagcctcatccgttctattgtctcttcctttatgtagtttctctgag 175
Query: 641 aaaggagatggtcaacatagaccacaattgtttcctc 677
|| || || ||||| || ||||| |||||||||||
Sbjct: 174 tcagaaggtgatcaacgtaaaccaccattgtttcctc 138
>gb|DT507040.1|DT507040 WS02417.BR_D03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_D03 5', mRNA sequence
Length = 887
Score = 143 bits (72), Expect = 1e-032
Identities = 264/328 (80%)
Strand = Plus / Minus
Query: 313 gggttgccatccacaagcgagttctcgtatatctctttgcattcttgtacaacctccttg 372
||||| ||||| ||||| || ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 712 gggtttccatcaacaagtgaattctcataaatctctttgcactcttgtacaacctctttc 653
Query: 373 gcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacctcaggcggg 432
|| |||||| ||| |||||||| |||| | | |||||||| | || || || ||||||
Sbjct: 652 gcatcctttcgtggtatgccttctcgcagtccaacaagcttttcaactacttcgggcggg 593
Query: 433 caatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaactctca 492
|| |||||||||||||| || ||||| | || ||||| || ||| |||||||||||||
Sbjct: 592 cagtcaggttgatgttcaagaatattcatatagatgagcgtgaaggtatccaaactctct 533
Query: 493 gctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttttgtcacg 552
||||||| || || ||| ||| ||| |||| ||||| ||||| ||||| | ||||
Sbjct: 532 cctgaagcaagttctttcaaatcactcagtatcctgactctactttctactttagacacg 473
Query: 553 ttgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcctctctatc 612
| || | ||||||||||| ||||||| ||||||||||||| |||||||| ||||||
Sbjct: 472 ctaatatactccctgaagaagtccataataacctcttcatctagcctcatccgttctatc 413
Query: 613 gtttcttcttttatgtagtttttctgag 640
|| ||||| || ||||||||||||||||
Sbjct: 412 gtctcttccttgatgtagtttttctgag 385
>gb|DT511702.1|DT511702 WS02417.B21_D03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_D03 3', mRNA sequence
Length = 836
Score = 143 bits (72), Expect = 1e-032
Identities = 264/328 (80%)
Strand = Plus / Plus
Query: 313 gggttgccatccacaagcgagttctcgtatatctctttgcattcttgtacaacctccttg 372
||||| ||||| ||||| || ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 355 gggtttccatcaacaagtgaattctcataaatctctttgcactcttgtacaacctctttc 414
Query: 373 gcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacctcaggcggg 432
|| |||||| ||| |||||||| |||| | | |||||||| | || || || ||||||
Sbjct: 415 gcatcctttcgtggtatgccttctcgcagtccaacaagcttttcaactacttcgggcggg 474
Query: 433 caatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaactctca 492
|| |||||||||||||| || ||||| | || ||||| || ||| |||||||||||||
Sbjct: 475 cagtcaggttgatgttcaagaatattcatatagatgagcgtgaaggtatccaaactctct 534
Query: 493 gctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttttgtcacg 552
||||||| || || ||| ||| ||| |||| ||||| ||||| ||||| | ||||
Sbjct: 535 cctgaagcaagttctttcaaatcactcagtatcctgactctactttctactttagacacg 594
Query: 553 ttgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcctctctatc 612
| || | ||||||||||| ||||||| ||||||||||||| |||||||| ||||||
Sbjct: 595 ctaatatactccctgaagaagtccataataacctcttcatctagcctcatccgttctatc 654
Query: 613 gtttcttcttttatgtagtttttctgag 640
|| ||||| || ||||||||||||||||
Sbjct: 655 gtctcttccttgatgtagtttttctgag 682
>gb|DT519107.1|DT519107 WS02440.B21_E15 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_E15 3', mRNA sequence
Length = 743
Score = 143 bits (72), Expect = 1e-032
Identities = 264/328 (80%)
Strand = Plus / Plus
Query: 313 gggttgccatccacaagcgagttctcgtatatctctttgcattcttgtacaacctccttg 372
||||| ||||| ||||| || ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 345 gggtttccatcaacaagtgaattctcataaatctctttgcactcttgtacaacctctttc 404
Query: 373 gcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacctcaggcggg 432
|| |||||| ||| |||||||| |||| | | |||||||| | || || || ||||||
Sbjct: 405 gcatcctttcgtggtatgccttctcgcagtccaacaagcttttcaactacttcgggcggg 464
Query: 433 caatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaactctca 492
|| |||||||||||||| || ||||| | || ||||| || ||| |||||||||||||
Sbjct: 465 cagtcaggttgatgttcaagaatattcatatagatgagcgtgaaggtatccaaactctct 524
Query: 493 gctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttttgtcacg 552
||||||| || || ||| ||| ||| |||| ||||| ||||| ||||| | ||||
Sbjct: 525 cctgaagcaagttctttcaaatcactcagtatcctgactctactttctactttagacacg 584
Query: 553 ttgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcctctctatc 612
| || | ||||||||||| ||||||| ||||||||||||| |||||||| ||||||
Sbjct: 585 ctaatatactccctgaagaagtccataataacctcttcatctagcctcatccgttctatc 644
Query: 613 gtttcttcttttatgtagtttttctgag 640
|| ||||| || ||||||||||||||||
Sbjct: 645 gtctcttccttgatgtagtttttctgag 672
>gb|DT511227.1|DT511227 WS02429.BR_O08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_O08 5', mRNA sequence
Length = 646
Score = 139 bits (70), Expect = 2e-031
Identities = 262/326 (80%)
Strand = Plus / Minus
Query: 313 gggttgccatccacaagcgagttctcgtatatctctttgcattcttgtacaacctccttg 372
||||| ||||| ||||| || ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 327 gggtttccatcaacaagtgaattctcataaatctctttgcactcttgtacaacctctttc 268
Query: 373 gcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacctcaggcggg 432
|| |||||| ||| |||||||| |||| | | |||||||| | || || || ||||||
Sbjct: 267 gcatcctttcgtggtatgccttctcgcagtccaacaagcttttcaactacttcgggcggg 208
Query: 433 caatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaactctca 492
|| |||||||||||||| || ||||| | || ||||| || ||| |||||||||||||
Sbjct: 207 cagtcaggttgatgttcaagaatattcatatagatgagcgtgaaggtatccaaactctct 148
Query: 493 gctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttttgtcacg 552
||||||| || || ||| ||| ||| |||| ||||| ||||| ||||| | ||||
Sbjct: 147 cctgaagcaagttctttcaaatcactcagtatcctgactctactttctactttagacacg 88
Query: 553 ttgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcctctctatc 612
| || | ||||||||||| ||||||| ||||||||||||| |||||||| ||||||
Sbjct: 87 ctaatatactccctgaagaagtccataataacctcttcatctagcctcatccgttctatc 28
Query: 613 gtttcttcttttatgtagtttttctg 638
|| ||||| || ||||||||||||||
Sbjct: 27 gtctcttccttgatgtagtttttctg 2
>gb|DT515921.1|DT515921 WS02429.B21.1_O08 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_O08 3', mRNA sequence
Length = 645
Score = 139 bits (70), Expect = 2e-031
Identities = 262/326 (80%)
Strand = Plus / Plus
Query: 313 gggttgccatccacaagcgagttctcgtatatctctttgcattcttgtacaacctccttg 372
||||| ||||| ||||| || ||||| || ||||||||||| |||||||||||||| ||
Sbjct: 319 gggtttccatcaacaagtgaattctcataaatctctttgcactcttgtacaacctctttc 378
Query: 373 gcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacctcaggcggg 432
|| |||||| ||| |||||||| |||| | | |||||||| | || || || ||||||
Sbjct: 379 gcatcctttcgtggtatgccttctcgcagtccaacaagcttttcaactacttcgggcggg 438
Query: 433 caatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaactctca 492
|| |||||||||||||| || ||||| | || ||||| || ||| |||||||||||||
Sbjct: 439 cagtcaggttgatgttcaagaatattcatatagatgagcgtgaaggtatccaaactctct 498
Query: 493 gctgaagctagctccctcatatctgccagaatccgcactctgctttcaacttttgtcacg 552
||||||| || || ||| ||| ||| |||| ||||| ||||| ||||| | ||||
Sbjct: 499 cctgaagcaagttctttcaaatcactcagtatcctgactctactttctactttagacacg 558
Query: 553 ttgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcctctctatc 612
| || | ||||||||||| ||||||| ||||||||||||| |||||||| ||||||
Sbjct: 559 ctaatatactccctgaagaagtccataataacctcttcatctagcctcatccgttctatc 618
Query: 613 gtttcttcttttatgtagtttttctg 638
|| ||||| || ||||||||||||||
Sbjct: 619 gtctcttccttgatgtagtttttctg 644
>gb|CK102756.1|CK102756 G090P20.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G090P20 5', mRNA sequence
Length = 372
Score = 87.7 bits (44), Expect = 5e-016
Identities = 189/236 (80%), Gaps = 1/236 (0%)
Strand = Plus / Minus
Query: 443 gatgttccagtatattagtgtaaatgagagtaaagctatccaaactctcagctgaagcta 502
||||||| || ||||| || || |||||||| ||| ||||| |||||| |||||||| |
Sbjct: 372 gatgttcaagaatatttgtatagatgagagtgaaggaatccagactctctgctgaagcaa 313
Query: 503 gctccctcatatctgccagaatccgcactctgctttcaacttttgtcacgttgatgtgtt 562
| || |||| ||| ||| ||||| ||||| ||||| ||||| | ||| |||| | |
Sbjct: 312 gttctctcaaatcactcagtatccggactctactttctactttagacactgtgatatact 253
Query: 563 ccc-tgaagaaatccataagcacctcttcatctaacctcatcctctctatcgtttcttct 621
||| ||||||| ||||||| ||||||||||||| |||||||| ||||| || |||||
Sbjct: 252 cccctgaagaagtccataataacctcttcatctagcctcatccgttctattgtctcttcc 193
Query: 622 tttatgtagtttttctgagaaaggagatggtcaacatagaccacaattgtttcctc 677
|||||||||||| |||||| || || || ||||| || ||||| |||||||||||
Sbjct: 192 tttatgtagtttctctgagtcagaaggtgatcaacgtaaaccaccattgtttcctc 137
>gb|CX656397.1|CX656397 PO01001C04 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01001C04 5', mRNA sequence
Length = 497
Score = 77.8 bits (39), Expect = 5e-013
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 562 tccctgaagaaatccataagcacctcttcatctaacctcatcctctctatcgtttcttct 621
||||||||||| ||||||| ||||||||||||| |||||||| ||||| || |||||
Sbjct: 438 tccctgaagaagtccataataacctcttcatctagcctcatccgttctatggtctcttcc 379
Query: 622 tttatgtagtttttctgag 640
|| ||||||||||||||||
Sbjct: 378 ttgatgtagtttttctgag 360
>gb|CV228477.1|CV228477 WS01910.B21_E04 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01910_E04 3', mRNA sequence
Length = 485
Score = 58.0 bits (29), Expect = 5e-007
Identities = 110/137 (80%)
Strand = Plus / Plus
Query: 313 gggttgccatccacaagcgagttctcgtatatctctttgcattcttgtacaacctccttg 372
||||| ||||| ||||| || ||||| |||||||||||||| ||||| | |||||| ||
Sbjct: 346 gggtttccatcaacaagtgaattctcatatatctctttgcactcttgcataacctctttc 405
Query: 373 gcttccttttttggaatgccttcccgcattgccacaagcttataaaaaacctcaggcggg 432
|| ||||| ||| |||||||| |||| | | |||||||| | || ||| ||||| |||
Sbjct: 406 gcatccttccgtggtatgccttctcgcagtccaacaagcttttcaacaacttcaggtggg 465
Query: 433 caatcaggttgatgttc 449
|| || ||||||||||
Sbjct: 466 cagtcgagttgatgttc 482
>gb|BU814683.1|BU814683 N031G09 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 717
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 621 ttttatgtagtttttctgagaaag 644
||||||||||||||| ||||||||
Sbjct: 289 ttttatgtagtttttttgagaaag 266
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 107,894
Number of Sequences: 369679
Number of extensions: 107894
Number of successful extensions: 28659
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28638
Number of HSP's gapped (non-prelim): 18
length of query: 721
length of database: 203,408,664
effective HSP length: 19
effective length of query: 702
effective length of database: 196,384,763
effective search space: 137862103626
effective search space used: 137862103626
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)