BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5110719.2.1
(581 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT477286.1|DT477286 WS02519.BR_I07 PT-MB-N-A-15 Populus ... 48 4e-004
gb|DT497480.1|DT497480 WS01126.BR_J17 PT-P-FL-A-2 Populus t... 48 4e-004
gb|DV463374.1|DV463374 MTUNUL1.P15.B03 NUL Populus fremonti... 48 4e-004
gb|BI070453.1|BI070453 C038P24U Populus strain T89 leaves P... 46 0.001
gb|BU883794.1|BU883794 R001E03 Populus root cDNA library Po... 46 0.001
gb|CK100492.1|CK100492 C038P24.5pR Populus strain T89 leave... 46 0.001
gb|CK117463.1|CK117463 B051P45 Hybrid aspen plasmid library... 46 0.001
gb|CV243423.1|CV243423 WS02518.B21_N10 PT-MB-N-A-15 Populus... 46 0.001
gb|CV243790.1|CV243790 WS0252.B21_N18 PT-MB-N-A-15 Populus ... 46 0.001
gb|CX173847.1|CX173847 D11_69-62_07.ab1 leaf inoculated wit... 46 0.001
gb|CX179699.1|CX179699 E01_45-18_09.ab1 leaf inoculated wit... 46 0.001
gb|DT481536.1|DT481536 WS02532.BR_C10 PT-MB-N-A-15 Populus ... 46 0.001
gb|DT522168.1|DT522168 WS02036.B21_D24 PTxN-IB-N-A-11 Popul... 46 0.001
gb|BU871150.1|BU871150 Q027D06 Populus flower cDNA library ... 44 0.006
gb|AJ772161.1|AJ772161 AJ772161 Populus euphratica shoot in... 38 0.36
>gb|DT477286.1|DT477286 WS02519.BR_I07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_I07 5', mRNA sequence
Length = 891
Score = 48.1 bits (24), Expect = 4e-004
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcct 62
||||||||||||||||| ||||| || || |||||||| |||| ||||| || |||||
Sbjct: 557 ttaacaatataccatgttaaaagccatttacagaaatatcgacttgcaaaataccttcct 616
Query: 63 gatgcttcaactgatgggaa 82
|| | ||| ||||||||||
Sbjct: 617 gactcctcatctgatgggaa 636
Score = 40.1 bits (20), Expect = 0.091
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 153 gaagccctcaaactgcagatggaggtccaaaagcg 187
||||| ||||| |||||||||||||| | ||||||
Sbjct: 707 gaagcactcaagctgcagatggaggtgcnaaagcg 741
>gb|DT497480.1|DT497480 WS01126.BR_J17 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01126_J17 5', mRNA sequence
Length = 760
Score = 48.1 bits (24), Expect = 4e-004
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcct 62
||||||||||||||||| ||||| || || |||||||| |||| ||||| || |||||
Sbjct: 531 ttaacaatataccatgttaaaagccatttacagaaatatcgacttgcaaaataccttcct 590
Query: 63 gatgcttcaactgatgggaa 82
|| | ||| ||||||||||
Sbjct: 591 gactcctcatctgatgggaa 610
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 153 gaagccctcaaactgcagatggaggtccaaaagcg 187
||||| ||||| |||||||||||||| ||||||||
Sbjct: 681 gaagcactcaagctgcagatggaggtgcaaaagcg 715
>gb|DV463374.1|DV463374 MTUNUL1.P15.B03 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 895
Score = 48.1 bits (24), Expect = 4e-004
Identities = 66/80 (82%)
Strand = Plus / Plus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcct 62
||||||||||||||||| ||||| || || |||||||| |||| ||||| || |||||
Sbjct: 574 ttaacaatataccatgttaaaagccatttacagaaatatcgacttgcaaaataccttcct 633
Query: 63 gatgcttcaactgatgggaa 82
|| | ||| ||||||||||
Sbjct: 634 gactcctcatctgatgggaa 653
Score = 40.1 bits (20), Expect = 0.091
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 153 gaagccctcaaactgcagatggaggtccaaaagcg 187
||||| ||||| |||||||||||||| || |||||
Sbjct: 724 gaagcactcaagctgcagatggaggtgcanaagcg 758
>gb|BI070453.1|BI070453 C038P24U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 268
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 153 gaagccctcaaactgcagatggaggtccaaaagcg 187
||||| ||||| |||||||||||||| ||||||||
Sbjct: 74 gaagcactcaagctgcagatggaggtgcaaaagcg 108
>gb|BU883794.1|BU883794 R001E03 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 563
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 153 gaagccctcaaactgcagatggaggtccaaaagcg 187
||||| ||||| |||||||||||||| ||||||||
Sbjct: 339 gaagcactcaagctgcagatggaggtgcaaaagcg 373
>gb|CK100492.1|CK100492 C038P24.5pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C038P24 5', mRNA sequence
Length = 293
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 153 gaagccctcaaactgcagatggaggtccaaaagcg 187
||||| ||||| |||||||||||||| ||||||||
Sbjct: 79 gaagcactcaagctgcagatggaggtgcaaaagcg 113
>gb|CK117463.1|CK117463 B051P45 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B051P45 5', mRNA sequence
Length = 324
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 catgtaaaaagtcacttgcagaaatac 41
||||||||||| |||||||||||||||
Sbjct: 263 catgtaaaaagccacttgcagaaatac 289
>gb|CV243423.1|CV243423 WS02518.B21_N10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02518_N10 3', mRNA sequence
Length = 947
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 153 gaagccctcaaactgcagatggaggtccaaaagcg 187
||||| ||||| |||||||||||||| ||||||||
Sbjct: 775 gaagcactcaagctgcagatggaggtgcaaaagcg 741
>gb|CV243790.1|CV243790 WS0252.B21_N18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0252_N18 3', mRNA sequence
Length = 828
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 153 gaagccctcaaactgcagatggaggtccaaaagcg 187
||||| ||||| |||||||||||||| ||||||||
Sbjct: 782 gaagcactcaagctgcagatggaggtgcaaaagcg 748
>gb|CX173847.1|CX173847 D11_69-62_07.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 641
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 153 gaagccctcaaactgcagatggaggtccaaaagcg 187
||||| ||||| |||||||||||||| ||||||||
Sbjct: 573 gaagcactcaagctgcagatggaggtgcaaaagcg 607
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaata 40
||||||||||||||||| ||||| || || ||||||||
Sbjct: 432 ttaacaatataccatgttaaaagccatttacagaaata 469
>gb|CX179699.1|CX179699 E01_45-18_09.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 695
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 153 gaagccctcaaactgcagatggaggtccaaaagcg 187
||||| ||||| |||||||||||||| ||||||||
Sbjct: 76 gaagcactcaagctgcagatggaggtgcaaaagcg 110
>gb|DT481536.1|DT481536 WS02532.BR_C10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_C10 5', mRNA sequence
Length = 796
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 153 gaagccctcaaactgcagatggaggtccaaaagcg 187
||||| ||||| |||||||||||||| ||||||||
Sbjct: 240 gaagcactcaagctgcagatggaggtgcaaaagcg 274
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaata 40
||||||||||||||||| ||||| || || ||||||||
Sbjct: 99 ttaacaatataccatgttaaaagccatttacagaaata 136
>gb|DT522168.1|DT522168 WS02036.B21_D24 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02036_D24 3', mRNA sequence
Length = 919
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 153 gaagccctcaaactgcagatggaggtccaaaagcg 187
||||| ||||| |||||||||||||| ||||||||
Sbjct: 779 gaagcactcaagctgcagatggaggtgcaaaagcg 745
>gb|BU871150.1|BU871150 Q027D06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 661
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaata 40
||||||||||||||||| ||||| || || ||||||||
Sbjct: 582 ttaacaatataccatgttaaaagccatttacagaaata 619
>gb|AJ772161.1|AJ772161 AJ772161 Populus euphratica shoot in vitro plantlet Israel Populus
euphratica cDNA clone P0001700002C05F1, mRNA sequence
Length = 340
Score = 38.2 bits (19), Expect = 0.36
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 14 ccatgtaaaaagtcacttgcagaaata 40
|||||| |||||||| |||||||||||
Sbjct: 87 ccatgtgaaaagtcatttgcagaaata 113
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,541
Number of Sequences: 369679
Number of extensions: 68541
Number of successful extensions: 19426
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19406
Number of HSP's gapped (non-prelim): 20
length of query: 581
length of database: 203,408,664
effective HSP length: 19
effective length of query: 562
effective length of database: 196,384,763
effective search space: 110368236806
effective search space used: 110368236806
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)