BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 4695478.2.1
         (1201 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU891435.1|BU891435  P050D08 Populus petioles cDNA librar...    42   0.048
gb|AJ768870.1|AJ768870  AJ768870 Populus euphratica leaf adu...    42   0.048
gb|AJ769009.1|AJ769009  AJ769009 Populus euphratica leaf adu...    42   0.048
gb|AJ769020.1|AJ769020  AJ769020 Populus euphratica leaf adu...    42   0.048
gb|AJ769215.1|AJ769215  AJ769215 Populus euphratica leaf adu...    42   0.048
gb|CX178098.1|CX178098  B11_45-55_03.ab1 leaf inoculated wit...    42   0.048
gb|DN499666.1|DN499666  T076A08.5pR Populus shoot meristem c...    42   0.048

>gb|BU891435.1|BU891435 P050D08 Populus petioles cDNA library Populus tremula cDNA 5 prime,
            mRNA sequence
          Length = 214

 Score = 42.1 bits (21), Expect = 0.048
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 998  gtgtagccacgggagaggaggagcttgac 1026
            ||||| ||||| |||||||||||||||||
Sbjct: 108  gtgtaaccacgtgagaggaggagcttgac 80



>gb|AJ768870.1|AJ768870 AJ768870 Populus euphratica leaf adult Populus euphratica cDNA
           clone P0000100022G01F1, mRNA sequence
          Length = 640

 Score = 42.1 bits (21), Expect = 0.048
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 827 ggaacaggagtggcgacatgaaagactcc 855
           ||||||||| |||| ||||||||||||||
Sbjct: 252 ggaacaggactggcaacatgaaagactcc 224



>gb|AJ769009.1|AJ769009 AJ769009 Populus euphratica leaf adult Populus euphratica cDNA
           clone P0000100024C11F1, mRNA sequence
          Length = 652

 Score = 42.1 bits (21), Expect = 0.048
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 827 ggaacaggagtggcgacatgaaagactcc 855
           ||||||||| |||| ||||||||||||||
Sbjct: 246 ggaacaggactggcaacatgaaagactcc 218



>gb|AJ769020.1|AJ769020 AJ769020 Populus euphratica leaf adult Populus euphratica cDNA
           clone P0000100024D10F1, mRNA sequence
          Length = 636

 Score = 42.1 bits (21), Expect = 0.048
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 827 ggaacaggagtggcgacatgaaagactcc 855
           ||||||||| |||| ||||||||||||||
Sbjct: 246 ggaacaggactggcaacatgaaagactcc 218



>gb|AJ769215.1|AJ769215 AJ769215 Populus euphratica leaf adult Populus euphratica cDNA
           clone P0000100026E11F1, mRNA sequence
          Length = 539

 Score = 42.1 bits (21), Expect = 0.048
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 827 ggaacaggagtggcgacatgaaagactcc 855
           ||||||||| |||| ||||||||||||||
Sbjct: 201 ggaacaggactggcaacatgaaagactcc 173



>gb|CX178098.1|CX178098 B11_45-55_03.ab1 leaf inoculated with Marssonia pathogen of Populus
            euramericana Populus x canadensis cDNA, mRNA sequence
          Length = 657

 Score = 42.1 bits (21), Expect = 0.048
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 998  gtgtagccacgggagaggaggagcttgac 1026
            ||||| ||||| |||||||||||||||||
Sbjct: 113  gtgtaaccacgtgagaggaggagcttgac 85



>gb|DN499666.1|DN499666 T076A08.5pR Populus shoot meristem cDNA library Populus tremula x
           Populus tremuloides cDNA clone T076A08 5', mRNA sequence
          Length = 624

 Score = 42.1 bits (21), Expect = 0.048
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 827 ggaacaggagtggcgacatgaaagactcc 855
           ||||||||| |||| ||||||||||||||
Sbjct: 446 ggaacaggactggcaacatgaaagactcc 418



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 121,009
Number of Sequences: 369679
Number of extensions: 121009
Number of successful extensions: 34504
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34494
Number of HSP's gapped (non-prelim): 10
length of query: 1201
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1182
effective length of database: 196,384,763
effective search space: 232126789866
effective search space used: 232126789866
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)