BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 4580138.2.1
         (1484 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF231481.1|CF231481  PtaC0021H9H0915 Poplar cDNA library ...    78   1e-012
gb|BU875096.1|BU875096  V002C09 Populus flower cDNA library ...    56   4e-006

>gb|CF231481.1|CF231481 PtaC0021H9H0915 Poplar cDNA library from cambial zone Populus alba x
            Populus tremula cDNA 5', mRNA sequence
          Length = 771

 Score = 77.8 bits (39), Expect = 1e-012
 Identities = 90/107 (84%)
 Strand = Plus / Minus

                                                                        
Query: 1111 ctagtgaaatactgcagagctgtcagggctccaggatatggaaatttcatgattgcccat 1170
            ||||||||||||||||  || || || || |||||||| || ||||||||||| ||||| 
Sbjct: 349  ctagtgaaatactgcaatgcagttagtgccccaggataggggaatttcatgatggcccac 290

                                                           
Query: 1171 ttgttgatgatcgagagcagcgacgctgataaacaatacccagcagc 1217
            ||||||||||| |||||||| || ||||| |  ||||| ||||||||
Sbjct: 289  ttgttgatgatggagagcagggatgctgagatgcaatatccagcagc 243



>gb|BU875096.1|BU875096 V002C09 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
            mRNA sequence
          Length = 597

 Score = 56.0 bits (28), Expect = 4e-006
 Identities = 94/116 (81%)
 Strand = Plus / Minus

                                                                        
Query: 1111 ctagtgaaatactgcagagctgtcagggctccaggatatggaaatttcatgattgcccat 1170
            |||||||||||||| | ||| || || || ||||| || || |||||||||| |||||| 
Sbjct: 326  ctagtgaaatactgtaaagccgttagcgccccagggtaagggaatttcatgactgcccac 267

                                                                    
Query: 1171 ttgttgatgatcgagagcagcgacgctgataaacaatacccagcagccacaccata 1226
            |||||||| || |||||||  || ||||| |  ||||| |||||||| || |||||
Sbjct: 266  ttgttgataatggagagcaaggatgctgagatgcaatatccagcagctacgccata 211



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 179,248
Number of Sequences: 369679
Number of extensions: 179248
Number of successful extensions: 49419
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49413
Number of HSP's gapped (non-prelim): 5
length of query: 1484
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1465
effective length of database: 196,384,763
effective search space: 287703677795
effective search space used: 287703677795
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)