BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3995470.2.1
         (744 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CF216236.1|CF216236  PT1053 Hybrid aspen xylem up-regulat...    38   0.46 
gb|CV244348.1|CV244348  WS0254.B21_G13 PT-MB-N-A-15 Populus ...    38   0.46 
gb|CV245449.1|CV245449  WS0257.B21_H07 PT-MB-N-A-15 Populus ...    38   0.46 
gb|CV264345.1|CV264345  WS02024.B21_E12 PTxN-IB-N-A-11 Popul...    38   0.46 
gb|CV269505.1|CV269505  WS0208.B21_H02 PTxN-IB-N-A-11 Populu...    38   0.46 
gb|CX181738.1|CX181738  B03_45-99_03.ab1 leaf inoculated wit...    38   0.46 
gb|DT489243.1|DT489243  WS02538.B21_K22 PT-MB-N-A-15 Populus...    38   0.46 
gb|DT489699.1|DT489699  WS02542.B21_P03 PT-MB-N-A-15 Populus...    38   0.46 
gb|DT520680.1|DT520680  WS02448.B21_D20 PTxD-ICC-N-A-14 Popu...    38   0.46 

>gb|CF216236.1|CF216236 PT1053 Hybrid aspen xylem up-regulated Populus alba x Populus
           tremula cDNA clone PT1053, mRNA sequence
          Length = 261

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 458 tggagaaggagaagacgacgacg 480
           |||||||| ||||||||||||||
Sbjct: 62  tggagaagaagaagacgacgacg 40



>gb|CV244348.1|CV244348 WS0254.B21_G13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS0254_G13 3', mRNA sequence
          Length = 844

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 458 tggagaaggagaagacgacgacg 480
           |||||||| ||||||||||||||
Sbjct: 482 tggagaagaagaagacgacgacg 504



>gb|CV245449.1|CV245449 WS0257.B21_H07 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS0257_H07 3', mRNA sequence
          Length = 825

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 458 tggagaaggagaagacgacgacg 480
           |||||||| ||||||||||||||
Sbjct: 422 tggagaagaagaagacgacgacg 444



>gb|CV264345.1|CV264345 WS02024.B21_E12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS02024_E12 3', mRNA sequence
          Length = 896

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 458 tggagaaggagaagacgacgacg 480
           |||||||| ||||||||||||||
Sbjct: 432 tggagaagaagaagacgacgacg 454



>gb|CV269505.1|CV269505 WS0208.B21_H02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
           cDNA clone WS0208_H02 3', mRNA sequence
          Length = 704

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 458 tggagaaggagaagacgacgacg 480
           |||||||| ||||||||||||||
Sbjct: 479 tggagaagaagaagacgacgacg 501



>gb|CX181738.1|CX181738 B03_45-99_03.ab1 leaf inoculated with Marssonia pathogen of Populus
           euramericana Populus x canadensis cDNA, mRNA sequence
          Length = 695

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 458 tggagaaggagaagacgacgacg 480
           |||||||| ||||||||||||||
Sbjct: 214 tggagaagaagaagacgacgacg 236



>gb|DT489243.1|DT489243 WS02538.B21_K22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02538_K22 3', mRNA sequence
          Length = 645

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 458 tggagaaggagaagacgacgacg 480
           |||||||| ||||||||||||||
Sbjct: 422 tggagaagaagaagacgacgacg 444



>gb|DT489699.1|DT489699 WS02542.B21_P03 PT-MB-N-A-15 Populus trichocarpa cDNA clone
           WS02542_P03 3', mRNA sequence
          Length = 913

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 458 tggagaaggagaagacgacgacg 480
           |||||||| ||||||||||||||
Sbjct: 496 tggagaagaagaagacgacgacg 518



>gb|DT520680.1|DT520680 WS02448.B21_D20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02448_D20 3', mRNA sequence
          Length = 899

 Score = 38.2 bits (19), Expect = 0.46
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 458 tggagaaggagaagacgacgacg 480
           |||||||| ||||||||||||||
Sbjct: 338 tggagaagaagaagacgacgacg 360



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,014
Number of Sequences: 369679
Number of extensions: 60014
Number of successful extensions: 16323
Number of sequences better than  0.5: 9
Number of HSP's better than  0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16305
Number of HSP's gapped (non-prelim): 18
length of query: 744
length of database: 203,408,664
effective HSP length: 19
effective length of query: 725
effective length of database: 196,384,763
effective search space: 142378953175
effective search space used: 142378953175
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)