BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3871943.2.1
         (1085 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CV131711.1|CV131711  L3P04g06 Populus stem seasonal libra...    46   0.003
gb|CV131751.1|CV131751  L3P05h06 Populus stem seasonal libra...    46   0.003
gb|CV131876.1|CV131876  L4P01g01 Populus stem seasonal libra...    46   0.003
gb|CA926674.1|CA926674  MTU6CR.P17.H01 Aspen root cDNA Libra...    44   0.011
gb|CN519975.1|CN519975  GQ0108.B3_K09 GQ010 Populus trichoca...    44   0.011
gb|CV254756.1|CV254756  WS02411.B21_B12 PTxD-ICC-N-A-14 Popu...    44   0.011
gb|CV254776.1|CV254776  WS02411.B21_C10 PTxD-ICC-N-A-14 Popu...    44   0.011
gb|CX187111.1|CX187111  A07_45-22_01.ab1 leaf inoculated wit...    44   0.011

>gb|CV131711.1|CV131711 L3P04g06 Populus stem seasonal library Populus deltoides cDNA, mRNA
           sequence
          Length = 616

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 794 gttgccgaagatgaagtccacggtgcc 820
           ||||||||||||||||||||| |||||
Sbjct: 221 gttgccgaagatgaagtccactgtgcc 195



>gb|CV131751.1|CV131751 L3P05h06 Populus stem seasonal library Populus deltoides cDNA, mRNA
           sequence
          Length = 577

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 794 gttgccgaagatgaagtccacggtgcc 820
           ||||||||||||||||||||| |||||
Sbjct: 165 gttgccgaagatgaagtccactgtgcc 139



>gb|CV131876.1|CV131876 L4P01g01 Populus stem seasonal library Populus deltoides cDNA, mRNA
           sequence
          Length = 766

 Score = 46.1 bits (23), Expect = 0.003
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 794 gttgccgaagatgaagtccacggtgcc 820
           ||||||||||||||||||||| |||||
Sbjct: 138 gttgccgaagatgaagtccactgtgcc 112



>gb|CA926674.1|CA926674 MTU6CR.P17.H01 Aspen root cDNA Library Populus tremuloides cDNA,
           mRNA sequence
          Length = 630

 Score = 44.1 bits (22), Expect = 0.011
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 795 ttgccgaagatgaagtccacggtgcc 820
           |||||||||||||||||||| |||||
Sbjct: 428 ttgccgaagatgaagtccaccgtgcc 403



>gb|CN519975.1|CN519975 GQ0108.B3_K09 GQ010 Populus trichocarpa x Populus deltoides cDNA
           clone GQ0108_K09 5', mRNA sequence
          Length = 737

 Score = 44.1 bits (22), Expect = 0.011
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 795 ttgccgaagatgaagtccacggtgcc 820
           |||||||||||||||||||| |||||
Sbjct: 303 ttgccgaagatgaagtccactgtgcc 278



>gb|CV254756.1|CV254756 WS02411.B21_B12 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02411_B12 3', mRNA sequence
          Length = 914

 Score = 44.1 bits (22), Expect = 0.011
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 795 ttgccgaagatgaagtccacggtgcc 820
           |||||||||||||||||||| |||||
Sbjct: 675 ttgccgaagatgaagtccactgtgcc 700



>gb|CV254776.1|CV254776 WS02411.B21_C10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
           deltoides cDNA clone WS02411_C10 3', mRNA sequence
          Length = 871

 Score = 44.1 bits (22), Expect = 0.011
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 795 ttgccgaagatgaagtccacggtgcc 820
           |||||||||||||||||||| |||||
Sbjct: 669 ttgccgaagatgaagtccactgtgcc 694



>gb|CX187111.1|CX187111 A07_45-22_01.ab1 leaf inoculated with Marssonia pathogen of Populus
           euramericana Populus x canadensis cDNA, mRNA sequence
          Length = 684

 Score = 44.1 bits (22), Expect = 0.011
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 795 ttgccgaagatgaagtccacggtgcc 820
           |||||||||||||||||||| |||||
Sbjct: 530 ttgccgaagatgaagtccactgtgcc 505



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 68,216
Number of Sequences: 369679
Number of extensions: 68216
Number of successful extensions: 16430
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16416
Number of HSP's gapped (non-prelim): 14
length of query: 1085
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1066
effective length of database: 196,384,763
effective search space: 209346157358
effective search space used: 209346157358
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)