BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3829259.2.1
(1019 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU821493.1|BU821493 UB23CPH06 Populus tremula cambium cD... 86 3e-015
gb|CK096710.1|CK096710 UB23CPH06.3pR Populus active cambium... 86 3e-015
gb|CV226133.1|CV226133 WS0163.B21_G06 PT-DX-A-7 Populus tri... 86 3e-015
gb|DT491082.1|DT491082 WS02546.C21.1_M06 PT-MB-N-A-15 Popul... 86 3e-015
gb|DT507619.1|DT507619 WS02418.BR_M05 PTxD-ICC-N-A-14 Popul... 86 3e-015
gb|DT512247.1|DT512247 WS02418.B21_M05 PTxD-ICC-N-A-14 Popu... 86 3e-015
gb|DT517135.1|DT517135 WS02433.B21_G17 PTxD-ICC-N-A-14 Popu... 86 3e-015
gb|DT508237.1|DT508237 WS02420.BR_G22 PTxD-ICC-N-A-14 Popul... 70 2e-010
gb|DT512853.1|DT512853 WS02420.B21_G22 PTxD-ICC-N-A-14 Popu... 70 2e-010
gb|DT517537.1|DT517537 WS02434.B21_J11 PTxD-ICC-N-A-14 Popu... 70 2e-010
gb|CX655372.1|CX655372 PO02034A05 Poplar SC cDNA library Po... 66 3e-009
gb|CV225974.1|CV225974 WS0162.B21_O17 PT-DX-A-7 Populus tri... 64 1e-008
gb|CV232955.1|CV232955 WS0199.B21_D04 PT-DX-N-A-10 Populus ... 64 1e-008
gb|CV235452.1|CV235452 WS0122.B21_D08 PT-GT-FL-A-3 Populus ... 64 1e-008
gb|CV272259.1|CV272259 WS0157.B21_C03 PTxN-IB-A-6 Populus t... 64 1e-008
gb|CK106529.1|CK106529 UB23CPH06.5pR Populus active cambium... 62 4e-008
gb|CV241642.1|CV241642 WS02512.B21_N02 PT-MB-N-A-15 Populus... 58 7e-007
gb|DV463802.1|DV463802 MTUNUL1.P2.F01 NUL Populus fremontii... 58 7e-007
gb|BU882175.1|BU882175 UM73TF03 Populus flower cDNA library... 54 1e-005
gb|DT515569.1|DT515569 WS02427.B21_O20 PTxD-ICC-N-A-14 Popu... 52 4e-005
gb|DV465662.1|DV465662 MTUNUL1.P41.E01 NUL Populus fremonti... 52 4e-005
gb|BI126652.1|BI126652 I078P42P Populus leaf cDNA library P... 48 7e-004
gb|DT511066.1|DT511066 WS02429.BR_H10 PTxD-ICC-N-A-14 Popul... 48 7e-004
gb|DT515766.1|DT515766 WS02429.B21.1_H10 PTxD-ICC-N-A-14 Po... 48 7e-004
gb|CN520824.1|CN520824 GQ0108.B3_C02 GQ010 Populus trichoca... 46 0.003
gb|CV245200.1|CV245200 WS0256.B21_M02 PT-MB-N-A-15 Populus ... 46 0.003
gb|DN492094.1|DN492094 V046C01.3pR Populus male catkins cDN... 46 0.003
gb|DN496017.1|DN496017 P029C05.5pR Populus petioles cDNA li... 46 0.003
gb|DT492486.1|DT492486 WS02550.C21_N20 PT-MB-N-A-15 Populus... 46 0.003
gb|CV251449.1|CV251449 WS0117.B21_A21 PT-P-FL-A-2 Populus t... 44 0.010
gb|DT518289.1|DT518289 WS02436.B21_L17 PTxD-ICC-N-A-14 Popu... 44 0.010
gb|CK092883.1|CK092883 G098P81.3pR Populus tension wood cDN... 42 0.041
gb|CV259376.1|CV259376 WS02011.B21_D04 PTxN-IB-N-A-11 Popul... 42 0.041
gb|CV264513.1|CV264513 WS02024.B21_L16 PTxN-IB-N-A-11 Popul... 42 0.041
gb|CV269798.1|CV269798 WS0209.B21_E11 PTxN-IB-N-A-11 Populu... 42 0.041
gb|CX181129.1|CX181129 C04_45-95_06.ab1 leaf inoculated wit... 42 0.041
gb|CX187349.1|CX187349 B08_45-65_04.ab1 leaf inoculated wit... 42 0.041
gb|DN502039.1|DN502039 V046C01.5pR Populus male catkins cDN... 42 0.041
gb|DT505258.1|DT505258 WS01810.C21_H02 PTxD-IL-N-A-9 Populu... 42 0.041
>gb|BU821493.1|BU821493 UB23CPH06 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 473
Score = 85.7 bits (43), Expect = 3e-015
Identities = 131/159 (82%), Gaps = 1/159 (0%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| |||| |||||| || ||||||| || ||||| ||| ||||||
Sbjct: 297 ggcctcctgccaacagcaacttgctgcacatagggcatgagattgtttggaattccacga 238
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaa 968
|| || ||||||| || ||||| || || || ||| ||||||||||||| || || ||
Sbjct: 237 ggatcctcaccaatatagccactcggatgtgcaccagctggattaaagtatctgagtaat 178
Query: 969 atgatattccattcaggatctgaa-tgtagatatcacgg 1006
||||| |||||||||| ||||||| ||||||||||||||
Sbjct: 177 atgatcttccattcagaatctgaactgtagatatcacgg 139
>gb|CK096710.1|CK096710 UB23CPH06.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB23CPH06 3', mRNA sequence
Length = 875
Score = 85.7 bits (43), Expect = 3e-015
Identities = 131/159 (82%), Gaps = 1/159 (0%)
Strand = Plus / Plus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| |||| |||||| || ||||||| || ||||| ||| ||||||
Sbjct: 635 ggcctcctgccaacagcaacttgctgcacatagggcatgagattgtttggaattccacga 694
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaa 968
|| || ||||||| || ||||| || || || ||| ||||||||||||| || || ||
Sbjct: 695 ggatcctcaccaatatagccactcggatgtgcaccagctggattaaagtatctgagtaat 754
Query: 969 atgatattccattcaggatctgaa-tgtagatatcacgg 1006
||||| |||||||||| ||||||| ||||||||||||||
Sbjct: 755 atgatcttccattcagaatctgaactgtagatatcacgg 793
Score = 56.0 bits (28), Expect = 3e-006
Identities = 109/136 (80%)
Strand = Plus / Plus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 380 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 439
Query: 647 tcaaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgct 706
|||||||| || ||||||| |||||||| ||||| || ||||| | |||||| ||
Sbjct: 440 tcaaatgctgcaaccatctccagaactgatgtacctttccctgttcccaagttgtacact 499
Query: 707 tcacatcctatgttag 722
||||| ||||| ||||
Sbjct: 500 tcacaacctatattag 515
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 266 ccataagggttcttgctggcccagttcca 294
>gb|CV226133.1|CV226133 WS0163.B21_G06 PT-DX-A-7 Populus trichocarpa cDNA clone WS0163_G06
3', mRNA sequence
Length = 918
Score = 85.7 bits (43), Expect = 3e-015
Identities = 128/155 (82%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| |||| |||||| || ||||||| || ||||| ||| ||||||
Sbjct: 658 ggcctcctgccaacagcaacttgctgcacatagggcatgagattgtttggaattccacga 717
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaa 968
|| || ||||||| || ||||| || || || ||||||||||||||||| || || ||
Sbjct: 718 ggatcctcaccaatatagccacttggatgtgcaccaactggattaaagtatctgagtaat 777
Query: 969 atgatattccattcaggatctgaa-tgtagatatc 1002
||||| |||||||||| ||||||| ||||||||||
Sbjct: 778 atgatcttccattcagaatctgaactgtagatatc 812
Score = 63.9 bits (32), Expect = 1e-008
Identities = 110/136 (80%)
Strand = Plus / Plus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 403 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 462
Query: 647 tcaaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgct 706
|||||||| ||| ||||||| |||||||| ||||| || ||||| | |||||| ||
Sbjct: 463 tcaaatgctgcgaccatctccagaactgatgtacctttccctgttcccaagttgtacact 522
Query: 707 tcacatcctatgttag 722
||||| ||||| ||||
Sbjct: 523 tcacaacctatattag 538
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 289 ccataagggttcttgctggcccagttcca 317
>gb|DT491082.1|DT491082 WS02546.C21.1_M06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02546_M06 3', mRNA sequence
Length = 922
Score = 85.7 bits (43), Expect = 3e-015
Identities = 128/155 (82%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| |||| |||||| || ||||||| || ||||| ||| ||||||
Sbjct: 691 ggcctcctgccaacagcaacttgctgcacatagggcatgagattgtttggaattccacga 750
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaa 968
|| || ||||||| || ||||| || || || ||||||||||||||||| || || ||
Sbjct: 751 ggatcctcaccaatatagccacttggatgtgcaccaactggattaaagtatctgagtaat 810
Query: 969 atgatattccattcaggatctgaa-tgtagatatc 1002
||||| |||||||||| ||||||| ||||||||||
Sbjct: 811 atgatcttccattcagaatctgaactgtagatatc 845
Score = 63.9 bits (32), Expect = 1e-008
Identities = 110/136 (80%)
Strand = Plus / Plus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 436 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 495
Query: 647 tcaaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgct 706
|||||||| ||| ||||||| |||||||| ||||| || ||||| | |||||| ||
Sbjct: 496 tcaaatgctgcgaccatctccagaactgatgtacctttccctgttcccaagttgtacact 555
Query: 707 tcacatcctatgttag 722
||||| ||||| ||||
Sbjct: 556 tcacaacctatattag 571
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 322 ccataagggttcttgctggcccagttcca 350
>gb|DT507619.1|DT507619 WS02418.BR_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_M05 5', mRNA sequence
Length = 833
Score = 85.7 bits (43), Expect = 3e-015
Identities = 128/155 (82%), Gaps = 1/155 (0%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| |||| |||||| || ||||||| || ||||| ||| ||||||
Sbjct: 714 ggcctcctgccaacagcaacttgctgcacatagggcatgagattgtttggaattccacga 655
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaa 968
|| || ||||||| || ||||| || || || ||||||||||||||||| || || ||
Sbjct: 654 ggatcctcaccaatatagccacttggatgtgcaccaactggattaaagtatctgagtaat 595
Query: 969 atgatattccattcaggatctgaa-tgtagatatc 1002
||||| |||||||||| ||||||| ||||||||||
Sbjct: 594 atgatcttccattcagaatctgaactgtagatatc 560
>gb|DT512247.1|DT512247 WS02418.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02418_M05 3', mRNA sequence
Length = 914
Score = 85.7 bits (43), Expect = 3e-015
Identities = 128/155 (82%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| |||| |||||| || ||||||| || ||||| ||| ||||||
Sbjct: 649 ggcctcctgccaacagcaacttgctgcacatagggcatgagattgtttggaattccacga 708
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaa 968
|| || ||||||| || ||||| || || || ||||||||||||||||| || || ||
Sbjct: 709 ggatcctcaccaatatagccacttggatgtgcaccaactggattaaagtatctgagtaat 768
Query: 969 atgatattccattcaggatctgaa-tgtagatatc 1002
||||| |||||||||| ||||||| ||||||||||
Sbjct: 769 atgatcttccattcagaatctgaactgtagatatc 803
Score = 63.9 bits (32), Expect = 1e-008
Identities = 110/136 (80%)
Strand = Plus / Plus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 394 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 453
Query: 647 tcaaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgct 706
|||||||| ||| ||||||| |||||||| ||||| || ||||| | |||||| ||
Sbjct: 454 tcaaatgctgcgaccatctccagaactgatgtacctttccctgttcccaagttgtacact 513
Query: 707 tcacatcctatgttag 722
||||| ||||| ||||
Sbjct: 514 tcacaacctatattag 529
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 280 ccataagggttcttgctggcccagttcca 308
>gb|DT517135.1|DT517135 WS02433.B21_G17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02433_G17 3', mRNA sequence
Length = 881
Score = 85.7 bits (43), Expect = 3e-015
Identities = 128/155 (82%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| |||| |||||| || ||||||| || ||||| ||| ||||||
Sbjct: 646 ggcctcctgccaacagcaacttgctgcacatagggcatgagattgtttggaattccacga 705
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaa 968
|| || ||||||| || ||||| || || || ||||||||||||||||| || || ||
Sbjct: 706 ggatcctcaccaatatagccacttggatgtgcaccaactggattaaagtatctgagtaat 765
Query: 969 atgatattccattcaggatctgaa-tgtagatatc 1002
||||| |||||||||| ||||||| ||||||||||
Sbjct: 766 atgatcttccattcagaatctgaactgtagatatc 800
Score = 63.9 bits (32), Expect = 1e-008
Identities = 110/136 (80%)
Strand = Plus / Plus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 391 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 450
Query: 647 tcaaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgct 706
|||||||| ||| ||||||| |||||||| ||||| || ||||| | |||||| ||
Sbjct: 451 tcaaatgctgcgaccatctccagaactgatgtacctttccctgttcccaagttgtacact 510
Query: 707 tcacatcctatgttag 722
||||| ||||| ||||
Sbjct: 511 tcacaacctatattag 526
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 277 ccataagggttcttgctggcccagttcca 305
>gb|DT508237.1|DT508237 WS02420.BR_G22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_G22 5', mRNA sequence
Length = 882
Score = 69.9 bits (35), Expect = 2e-010
Identities = 126/155 (81%), Gaps = 1/155 (0%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| |||| |||||| || ||||||| || || || ||| ||||||
Sbjct: 353 ggcctcctgccaacagcaacttgctgcacatagggcatgagattatttggaattccacga 294
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaa 968
|| || ||||||| | ||||| || || || ||||||||||||||||| || || ||
Sbjct: 293 ggatcctcaccaatacagccacttggatgtgcaccaactggattaaagtatctgagtaat 234
Query: 969 atgatattccattcaggatctgaa-tgtagatatc 1002
||||| |||||||||| ||||||| ||||||||||
Sbjct: 233 atgatcttccattcagaatctgaactgtagatatc 199
Score = 63.9 bits (32), Expect = 1e-008
Identities = 110/136 (80%)
Strand = Plus / Minus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 608 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 549
Query: 647 tcaaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgct 706
|||||||| ||| ||||||| |||||||| ||||| || ||||| | |||||| ||
Sbjct: 548 tcaaatgctgcgaccatctccagaactgatgtacctttccctgttcccaagttgtacact 489
Query: 707 tcacatcctatgttag 722
||||| ||||| ||||
Sbjct: 488 tcacaacctatattag 473
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 722 ccataagggttcttgctggcccagttcca 694
>gb|DT512853.1|DT512853 WS02420.B21_G22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02420_G22 3', mRNA sequence
Length = 922
Score = 69.9 bits (35), Expect = 2e-010
Identities = 126/155 (81%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| |||| |||||| || ||||||| || || || ||| ||||||
Sbjct: 619 ggcctcctgccaacagcaacttgctgcacatagggcatgagattatttggaattccacga 678
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaa 968
|| || ||||||| | ||||| || || || ||||||||||||||||| || || ||
Sbjct: 679 ggatcctcaccaatacagccacttggatgtgcaccaactggattaaagtatctgagtaat 738
Query: 969 atgatattccattcaggatctgaa-tgtagatatc 1002
||||| |||||||||| ||||||| ||||||||||
Sbjct: 739 atgatcttccattcagaatctgaactgtagatatc 773
Score = 63.9 bits (32), Expect = 1e-008
Identities = 110/136 (80%)
Strand = Plus / Plus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 364 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 423
Query: 647 tcaaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgct 706
|||||||| ||| ||||||| |||||||| ||||| || ||||| | |||||| ||
Sbjct: 424 tcaaatgctgcgaccatctccagaactgatgtacctttccctgttcccaagttgtacact 483
Query: 707 tcacatcctatgttag 722
||||| ||||| ||||
Sbjct: 484 tcacaacctatattag 499
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 250 ccataagggttcttgctggcccagttcca 278
>gb|DT517537.1|DT517537 WS02434.B21_J11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_J11 3', mRNA sequence
Length = 794
Score = 69.9 bits (35), Expect = 2e-010
Identities = 126/155 (81%), Gaps = 1/155 (0%)
Strand = Plus / Plus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||||||||||||| |||| |||||| || ||||||| || || || ||| ||||||
Sbjct: 631 ggcctcctgccaacagcaacttgctgcacatagggcatgagattatttggaattccacga 690
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaa 968
|| || ||||||| | ||||| || || || ||||||||||||||||| || || ||
Sbjct: 691 ggatcctcaccaatacagccacttggatgtgcaccaactggattaaagtatctgagtaat 750
Query: 969 atgatattccattcaggatctgaa-tgtagatatc 1002
||||| |||||||||| ||||||| ||||||||||
Sbjct: 751 atgatcttccattcagaatctgaactgtagatatc 785
Score = 63.9 bits (32), Expect = 1e-008
Identities = 110/136 (80%)
Strand = Plus / Plus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 376 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 435
Query: 647 tcaaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgct 706
|||||||| ||| ||||||| |||||||| ||||| || ||||| | |||||| ||
Sbjct: 436 tcaaatgctgcgaccatctccagaactgatgtacctttccctgttcccaagttgtacact 495
Query: 707 tcacatcctatgttag 722
||||| ||||| ||||
Sbjct: 496 tcacaacctatattag 511
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 262 ccataagggttcttgctggcccagttcca 290
>gb|CX655372.1|CX655372 PO02034A05 Poplar SC cDNA library Populus alba x Populus tremula var.
glandulosa cDNA clone PO02034A05 5', mRNA sequence
Length = 335
Score = 65.9 bits (33), Expect = 3e-009
Identities = 127/157 (80%), Gaps = 1/157 (0%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccacat 908
|||| ||||||||| || |||||||| || ||||||| || ||||| ||| |||||| |
Sbjct: 237 ggccgcctgccaacagcgatttgctgcacatagggcatgagattgtttggaattccacgt 178
Query: 909 gggtcttcaccaaggtatccactggggtgagccccaactggattaaagtacctaagcaaa 968
|| || || |||| | ||||| || || || ||||||||||| ||||| ||||||||
Sbjct: 177 ggatcctcgccaatatgaccacttggatgtgcaccaactggattgaagtatgtaagcaaa 118
Query: 969 atgatattccattcaggatctgaa-tgtagatatcac 1004
||||| |||||||||| |||||| |||||||||||
Sbjct: 117 atgatcttccattcagagtctgaacggtagatatcac 81
>gb|CV225974.1|CV225974 WS0162.B21_O17 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_O17
3', mRNA sequence
Length = 504
Score = 63.9 bits (32), Expect = 1e-008
Identities = 110/136 (80%)
Strand = Plus / Minus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 170 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 111
Query: 647 tcaaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgct 706
|||||||| ||| ||||||| |||||||| ||||| || ||||| | |||||| ||
Sbjct: 110 tcaaatgctgcgaccatctccagaactgatgtacctttccctgttcccaagttgtacact 51
Query: 707 tcacatcctatgttag 722
||||| ||||| ||||
Sbjct: 50 tcacaacctatattag 35
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 284 ccataagggttcttgctggcccagttcca 256
>gb|CV232955.1|CV232955 WS0199.B21_D04 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0199_D04 3', mRNA sequence
Length = 542
Score = 63.9 bits (32), Expect = 1e-008
Identities = 110/136 (80%)
Strand = Plus / Minus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 219 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 160
Query: 647 tcaaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgct 706
|||||||| ||| ||||||| |||||||| ||||| || ||||| | |||||| ||
Sbjct: 159 tcaaatgctgcgaccatctccagaactgatgtacctttccctgttcccaagttgtacact 100
Query: 707 tcacatcctatgttag 722
||||| ||||| ||||
Sbjct: 99 tcacaacctatattag 84
>gb|CV235452.1|CV235452 WS0122.B21_D08 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0122_D08 3', mRNA sequence
Length = 652
Score = 63.9 bits (32), Expect = 1e-008
Identities = 110/136 (80%)
Strand = Plus / Plus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 448 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 507
Query: 647 tcaaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgct 706
|||||||| ||| ||||||| |||||||| ||||| || ||||| | |||||| ||
Sbjct: 508 tcaaatgctgcgaccatctccagaactgatgtacctttccctgttcccaagttgtacact 567
Query: 707 tcacatcctatgttag 722
||||| ||||| ||||
Sbjct: 568 tcacaacctatattag 583
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 334 ccataagggttcttgctggcccagttcca 362
>gb|CV272259.1|CV272259 WS0157.B21_C03 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0157_C03 3', mRNA sequence
Length = 696
Score = 63.9 bits (32), Expect = 1e-008
Identities = 110/136 (80%)
Strand = Plus / Plus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 403 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 462
Query: 647 tcaaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgct 706
|||||||| ||| ||||||| |||||||| ||||| || ||||| | |||||| ||
Sbjct: 463 tcaaatgctgcgaccatctccagaactgatgtacctttccctgttcccaagttgtacact 522
Query: 707 tcacatcctatgttag 722
||||| ||||| ||||
Sbjct: 523 tcacaacctatattag 538
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 289 ccataagggttcttgctggcccagttcca 317
>gb|CK106529.1|CK106529 UB23CPH06.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB23CPH06 5', mRNA sequence
Length = 464
Score = 61.9 bits (31), Expect = 4e-008
Identities = 130/159 (81%), Gaps = 3/159 (1%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaact-gcaatttgctgaacgaagggcataaggttgttaggagttccaca 907
|||||||||||||| |||| |||||| || ||||||| || ||||| ||| ||||||
Sbjct: 291 ggcctcctgccaacacgcaacttgctgcacatagggcatgagattgtttggaattccacg 232
Query: 908 tgggtcttcaccaaggtatccactggggtgagccccaactggattaaagtacctaagcaa 967
|| || ||||||| || ||||| || || || ||| ||||||||||||| || || ||
Sbjct: 231 aggatcctcaccaatatagccactcggatgtgcaccagctggattaaagtatctgagtaa 172
Query: 968 aatgatattccattcaggatctgaatgtagatatcacgg 1006
||||| |||||||||| |||||| ||||||||||||||
Sbjct: 171 tatgat-ttccattcag-atctgactgtagatatcacgg 135
>gb|CV241642.1|CV241642 WS02512.B21_N02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02512_N02 3', mRNA sequence
Length = 735
Score = 58.0 bits (29), Expect = 7e-007
Identities = 80/97 (82%)
Strand = Plus / Plus
Query: 626 attttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcctttt 685
|||||||||||||| ||||| |||||||| ||| ||||||| |||||||| |||||
Sbjct: 473 attttctttccagatgccttttcaaatgctgcgaccatctccagaactgatgtacctttc 532
Query: 686 ccggttccaaggttgtatgcttcacatcctatgttag 722
|| ||||| | |||||| ||||||| ||||| ||||
Sbjct: 533 cctgttcccaagttgtacacttcacaacctatattag 569
Score = 40.1 bits (20), Expect = 0.16
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 470 tatccataagggctcttgctagcccagttcca 501
||||||||| || ||||||| |||||||||||
Sbjct: 316 tatccataaaggttcttgctggcccagttcca 347
>gb|DV463802.1|DV463802 MTUNUL1.P2.F01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 593
Score = 58.0 bits (29), Expect = 7e-007
Identities = 117/145 (80%), Gaps = 1/145 (0%)
Strand = Plus / Minus
Query: 859 caactgcaatttgctgaacgaagggcataaggttgttaggagttccacatgggtcttcac 918
|||| |||| |||||| || ||||||| || ||||| ||| |||||| || || ||||
Sbjct: 593 caacagcaacttgctgcacatagggcatgagattgtttggaattccacgaggatcctcac 534
Query: 919 caaggtatccactggggtgagccccaactggattaaagtacctaagcaaaatgatattcc 978
||| || ||||| || || || ||||||||||||||||| || || || ||||| ||||
Sbjct: 533 caatatagccactcggatgtgcaccaactggattaaagtatctgagtaatatgatcttcc 474
Query: 979 attcaggatctgaa-tgtagatatc 1002
||| || ||||||| ||||||||||
Sbjct: 473 atttagaatctgaagtgtagatatc 449
>gb|BU882175.1|BU882175 UM73TF03 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 571
Score = 54.0 bits (27), Expect = 1e-005
Identities = 87/107 (81%)
Strand = Plus / Minus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 129 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 70
Query: 647 tcaaatgcattgactatctccaacactgatgttccttttccggttcc 693
|||||||| ||| ||||||| |||||||| ||||| || |||||
Sbjct: 69 tcaaatgctgcgaccatctccagaactgatgtacctttccctgttcc 23
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 243 ccataagggttcttgctggcccagttcca 215
>gb|DT515569.1|DT515569 WS02427.B21_O20 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_O20 3', mRNA sequence
Length = 495
Score = 52.0 bits (26), Expect = 4e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 394 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 453
Query: 647 tcaaatgcattgactatctccaacactgatgttccttt 684
|||||||| ||| ||||||| |||||||| |||||
Sbjct: 454 tcaaatgctgcgaccatctccagaactgatgtaccttt 491
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 280 ccataagggttcttgctggcccagttcca 308
>gb|DV465662.1|DV465662 MTUNUL1.P41.E01 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 853
Score = 52.0 bits (26), Expect = 4e-005
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 942 ccaactggattaaagtacctaagcaaaatgatattccattcaggatctgaa-tgtagata 1000
||||||||||||||||| || || || ||||| ||||||| || ||||||| ||||||||
Sbjct: 774 ccaactggattaaagtatctgagtaatatgatcttccatttagaatctgaagtgtagata 715
Query: 1001 tc 1002
||
Sbjct: 714 tc 713
>gb|BI126652.1|BI126652 I078P42P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 527
Score = 48.1 bits (24), Expect = 7e-004
Identities = 108/136 (79%)
Strand = Plus / Minus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||| ||||||||| |||||
Sbjct: 346 tcagcatcaccaggtcgccgatcagccattacaagaggaatttcctttccagatgccttt 287
Query: 647 tcaaatgcattgactatctccaacactgatgttccttttccggttccaaggttgtatgct 706
|||||||| || ||||||| |||||||| ||||| || ||||| | |||||| ||
Sbjct: 286 tcaaatgctgcaaccatctccagaactgatgtacctttccctgttcccaagttgtacact 227
Query: 707 tcacatcctatgttag 722
||||| ||||| ||||
Sbjct: 226 tcacaacctatattag 211
Score = 44.1 bits (22), Expect = 0.010
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 849 ggcctcctgccaactgcaatttgctgaacgaagggcataaggttgttaggagttccac 906
|||||||||||||| |||| |||||| || ||||||| || ||||| ||| ||||||
Sbjct: 91 ggcctcctgccaacagcaacttgctgcacatagggcatgagattgtttggaattccac 34
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 460 ccataagggttcttgctggcccagttcca 432
>gb|DT511066.1|DT511066 WS02429.BR_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_H10 5', mRNA sequence
Length = 465
Score = 48.1 bits (24), Expect = 7e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 71 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 12
Query: 647 tcaaatgc 654
||||||||
Sbjct: 11 tcaaatgc 4
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 185 ccataagggttcttgctggcccagttcca 157
>gb|DT515766.1|DT515766 WS02429.B21.1_H10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_H10 3', mRNA sequence
Length = 465
Score = 48.1 bits (24), Expect = 7e-004
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 587 tcagcatcaccaggacgccgttggcccatgaccaaagggattttctttccagaagccttc 646
|||||||||||||| ||||| | |||| || | ||| |||||||||||||| |||||
Sbjct: 395 tcagcatcaccaggtcgccgatcagccattacaagaggaattttctttccagatgccttt 454
Query: 647 tcaaatgc 654
||||||||
Sbjct: 455 tcaaatgc 462
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 281 ccataagggttcttgctggcccagttcca 309
>gb|CN520824.1|CN520824 GQ0108.B3_C02 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0108_C02 5', mRNA sequence
Length = 603
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcc 681
||||||||||| |||||||| || ||||||||| |||| || || | ||| ||||||||
Sbjct: 207 gggattttcttgccagaagctttttcaaatgcagtgaccatttcaagcacagatgttcc 149
>gb|CV245200.1|CV245200 WS0256.B21_M02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0256_M02 3', mRNA sequence
Length = 613
Score = 46.1 bits (23), Expect = 0.003
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||||| || ||||||||| |||| || || | ||| ||||||||
Sbjct: 434 gggattttcttgccagaagctttttcaaatgcagtgaccatttcaagcacagatgttcca 493
Query: 683 tttccggttccaaggttgtatgc 705
||| || || |||||||||||
Sbjct: 494 catccagtccccaggttgtatgc 516
>gb|DN492094.1|DN492094 V046C01.3pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V046C01 3', mRNA sequence
Length = 753
Score = 46.1 bits (23), Expect = 0.003
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||||| || ||||||||| |||| || || | ||| ||||||||
Sbjct: 397 gggattttcttgccagaagctttttcaaatgcagtgaccatttcaagcacagatgttcca 456
Query: 683 tttccggttccaaggttgtatgc 705
||| || || |||||||||||
Sbjct: 457 catccagtccccaggttgtatgc 479
>gb|DN496017.1|DN496017 P029C05.5pR Populus petioles cDNA library Populus tremula cDNA
clone P029C05 5', mRNA sequence
Length = 877
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 942 ccaactggattaaagtacctaagcaaaatgatattccattcag 984
||||||||||| ||||| |||||||||||| ||||||||||
Sbjct: 850 ccaactggattgaagtattaaagcaaaatgatcttccattcag 808
>gb|DT492486.1|DT492486 WS02550.C21_N20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02550_N20 3', mRNA sequence
Length = 807
Score = 46.1 bits (23), Expect = 0.003
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 623 gggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcct 682
||||||||||| |||||||| || ||||||||| |||| || || | ||| ||||||||
Sbjct: 416 gggattttcttgccagaagctttttcaaatgcagtgaccatttcaagcacagatgttcca 475
Query: 683 tttccggttccaaggttgtatgc 705
||| || || |||||||||||
Sbjct: 476 catccagtccccaggttgtatgc 498
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 954 aagtacctaagcaaaatgatattccattc 982
||||||||||| ||||||||| |||||||
Sbjct: 743 aagtacctaagtaaaatgatactccattc 771
>gb|CV251449.1|CV251449 WS0117.B21_A21 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0117_A21 3', mRNA sequence
Length = 616
Score = 44.1 bits (22), Expect = 0.010
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 624 ggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcctt 683
|||||||||| |||||||| || ||||||||| |||| || || | ||| ||||||||
Sbjct: 415 ggattttcttgccagaagctttttcaaatgcagtgaccatttcaagcacagatgttccac 474
Query: 684 ttccggttccaaggttgtatgc 705
||| || || |||||||||||
Sbjct: 475 atccagtccccaggttgtatgc 496
>gb|DT518289.1|DT518289 WS02436.B21_L17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02436_L17 3', mRNA sequence
Length = 925
Score = 44.1 bits (22), Expect = 0.010
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 624 ggattttctttccagaagccttctcaaatgcattgactatctccaacactgatgttcctt 683
|||||||||| |||||||| || ||||||||| |||| || || | ||| ||||||||
Sbjct: 435 ggattttcttgccagaagctttttcaaatgcagtgaccatttcaagcacagatgttccac 494
Query: 684 ttccggttccaaggttgtatgc 705
||| || || |||||||||||
Sbjct: 495 atccagtccccaggttgtatgc 516
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 954 aagtacctaagcaaaatgatattccattc 982
||||||||||| ||||||||| |||||||
Sbjct: 762 aagtacctaagtaaaatgatactccattc 790
>gb|CK092883.1|CK092883 G098P81.3pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G098P81 3', mRNA sequence
Length = 745
Score = 42.1 bits (21), Expect = 0.041
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 623 gggattttctttccagaagccttctcaaatgca 655
||||||||||| |||||||| || |||||||||
Sbjct: 489 gggattttcttgccagaagctttttcaaatgca 521
>gb|CV259376.1|CV259376 WS02011.B21_D04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_D04 3', mRNA sequence
Length = 762
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 629 ccataagggttcttgctggcccagttcca 657
>gb|CV264513.1|CV264513 WS02024.B21_L16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02024_L16 3', mRNA sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 513 ccataagggttcttgctggcccagttcca 541
>gb|CV269798.1|CV269798 WS0209.B21_E11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0209_E11 3', mRNA sequence
Length = 601
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 473 ccataagggctcttgctagcccagttcca 501
||||||||| ||||||| |||||||||||
Sbjct: 261 ccataagggttcttgctggcccagttcca 289
>gb|CX181129.1|CX181129 C04_45-95_06.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 738
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 954 aagtacctaagcaaaatgatattccattc 982
||||||||||| ||||||||| |||||||
Sbjct: 604 aagtacctaagtaaaatgatactccattc 576
>gb|CX187349.1|CX187349 B08_45-65_04.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 592
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 954 aagtacctaagcaaaatgatattccattc 982
||||||||||| ||||||||| |||||||
Sbjct: 591 aagtacctaagtaaaatgatactccattc 563
>gb|DN502039.1|DN502039 V046C01.5pR Populus male catkins cDNA library Populus trichocarpa
cDNA clone V046C01 5', mRNA sequence
Length = 797
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 954 aagtacctaagcaaaatgatattccattc 982
||||||||||| ||||||||| |||||||
Sbjct: 667 aagtacctaagtaaaatgatactccattc 639
>gb|DT505258.1|DT505258 WS01810.C21_H02 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS01810_H02 3', mRNA sequence
Length = 935
Score = 42.1 bits (21), Expect = 0.041
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 954 aagtacctaagcaaaatgatattccattc 982
||||||||||| ||||||||| |||||||
Sbjct: 773 aagtacctaagtaaaatgatactccattc 801
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 128,178
Number of Sequences: 369679
Number of extensions: 128178
Number of successful extensions: 33568
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 38
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33457
Number of HSP's gapped (non-prelim): 86
length of query: 1019
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1000
effective length of database: 196,384,763
effective search space: 196384763000
effective search space used: 196384763000
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)