BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3802264.2.1
         (1189 letters)

Database: Populus_nucl_with_EST.fasta 
           369,679 sequences; 203,408,664 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU865405.1|BU865405  S053C06 Populus imbibed seed cDNA li...    40   0.19 

>gb|BU865405.1|BU865405 S053C06 Populus imbibed seed cDNA library Populus tremula cDNA 5
           prime, mRNA sequence
          Length = 477

 Score = 40.1 bits (20), Expect = 0.19
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 494 tggtggtgtacgcggacctg 513
           ||||||||||||||||||||
Sbjct: 237 tggtggtgtacgcggacctg 218



  Database: Populus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:49 PM
  Number of letters in database: 203,408,664
  Number of sequences in database:  369,679
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,648
Number of Sequences: 369679
Number of extensions: 69648
Number of successful extensions: 17936
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17934
Number of HSP's gapped (non-prelim): 2
length of query: 1189
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1170
effective length of database: 196,384,763
effective search space: 229770172710
effective search space used: 229770172710
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)