BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3754578.2.1
(725 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK088334.1|CK088334 A048P19.3pR Hybrid aspen plasmid lib... 48 5e-004
gb|BU862723.1|BU862723 S019C07 Populus imbibed seed cDNA li... 38 0.45
gb|BU863575.1|BU863575 S029G02 Populus imbibed seed cDNA li... 38 0.45
gb|BU863728.1|BU863728 S031F01 Populus imbibed seed cDNA li... 38 0.45
gb|BU864602.1|BU864602 S042F06 Populus imbibed seed cDNA li... 38 0.45
gb|BU866004.1|BU866004 S061E11 Populus imbibed seed cDNA li... 38 0.45
gb|BU867255.1|BU867255 S076B03 Populus imbibed seed cDNA li... 38 0.45
gb|BU868075.1|BU868075 M110H07 Populus flower cDNA library ... 38 0.45
gb|BU868701.1|BU868701 M120B04 Populus flower cDNA library ... 38 0.45
gb|BU883271.1|BU883271 UM88TD09 Populus flower cDNA library... 38 0.45
gb|BU886972.1|BU886972 R052H09 Populus root cDNA library Po... 38 0.45
gb|BU887601.1|BU887601 R064A02 Populus root cDNA library Po... 38 0.45
gb|CA926969.1|CA926969 MTU6CR.P3.D04 Aspen root cDNA Librar... 38 0.45
gb|CA927428.1|CA927428 MTU6CR.P8.H06 Aspen root cDNA Librar... 38 0.45
gb|CA927429.1|CA927429 MTU6CR.P8.H07 Aspen root cDNA Librar... 38 0.45
gb|CA824133.1|CA824133 R37B01 two-month-old roots from clon... 38 0.45
gb|CK095954.1|CK095954 UA38BPB06.3pR Populus dormant cambiu... 38 0.45
gb|CV249958.1|CV249958 WS01125.B21_N23 PT-P-FL-A-2 Populus ... 38 0.45
gb|CV273885.1|CV273885 WS01712.B21_I02 PTxD-NR-A-8 Populus ... 38 0.45
gb|CV275404.1|CV275404 WS0176.B21_F22 PTxD-NR-A-8 Populus t... 38 0.45
gb|DN484894.1|DN484894 K034P26.3pR Populus apical shoot cDN... 38 0.45
gb|DN494372.1|DN494372 K034P26.5pR Populus apical shoot cDN... 38 0.45
gb|DT479329.1|DT479329 WS02525.BR_I01 PT-MB-N-A-15 Populus ... 38 0.45
gb|DT483642.1|DT483642 WS02523.B21_C17 PT-MB-N-A-15 Populus... 38 0.45
gb|DT484468.1|DT484468 WS02525.B21_I01 PT-MB-N-A-15 Populus... 38 0.45
gb|DT484508.1|DT484508 WS02525.B21_J20 PT-MB-N-A-15 Populus... 38 0.45
gb|DT497230.1|DT497230 WS01125.BR_N23 PT-P-FL-A-2 Populus t... 38 0.45
gb|DT510665.1|DT510665 WS02427.BR_D11 PTxD-ICC-N-A-14 Popul... 38 0.45
gb|DT510759.1|DT510759 WS02427.BR_I11 PTxD-ICC-N-A-14 Popul... 38 0.45
gb|DT515424.1|DT515424 WS02427.B21_I11 PTxD-ICC-N-A-14 Popu... 38 0.45
>gb|CK088334.1|CK088334 A048P19.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A048P19 3', mRNA sequence
Length = 803
Score = 48.1 bits (24), Expect = 5e-004
Identities = 90/112 (80%)
Strand = Plus / Plus
Query: 558 ccaacttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagt 617
||||||||||||| || || | ||||||||| || || || || || || || || ||||
Sbjct: 317 ccaacttatcccataaacagatcatctgccttggggattggtaatgtgcagtataatagt 376
Query: 618 tctccaggcaaccgtactggcagaacttccagctgtgggaatattggacagg 669
|||||| ||| || || || ||||| |||||| ||||||| || ||||||||
Sbjct: 377 tctccatgcatccatattgacagaatttccagttgtgggagtactggacagg 428
>gb|BU862723.1|BU862723 S019C07 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 710
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 473 aaacaataaccaactggtt 491
>gb|BU863575.1|BU863575 S029G02 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 617
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 486 aaacaataaccaactggtt 504
>gb|BU863728.1|BU863728 S031F01 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 640
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 483 aaacaataaccaactggtt 501
>gb|BU864602.1|BU864602 S042F06 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 542
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 477 aaacaataaccaactggtt 495
>gb|BU866004.1|BU866004 S061E11 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 733
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 484 aaacaataaccaactggtt 502
>gb|BU867255.1|BU867255 S076B03 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 568
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 545 aaacaataaccaactggtt 563
>gb|BU868075.1|BU868075 M110H07 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 628
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 607 aaacaataaccaactggtt 625
>gb|BU868701.1|BU868701 M120B04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 558
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 506 aaacaataaccaactggtt 524
>gb|BU883271.1|BU883271 UM88TD09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 630
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 602 aaacaataaccaactggtt 620
>gb|BU886972.1|BU886972 R052H09 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 600
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 367 aaacaataaccaactggtt 349
>gb|BU887601.1|BU887601 R064A02 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 479
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 440 aaacaataaccaactggtt 458
>gb|CA926969.1|CA926969 MTU6CR.P3.D04 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 650
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 99 aaacaataaccaactggtt 117
>gb|CA927428.1|CA927428 MTU6CR.P8.H06 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 650
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 99 aaacaataaccaactggtt 117
>gb|CA927429.1|CA927429 MTU6CR.P8.H07 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 649
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 98 aaacaataaccaactggtt 116
>gb|CA824133.1|CA824133 R37B01 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 570
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 480 aaacaataaccaactggtt 498
>gb|CK095954.1|CK095954 UA38BPB06.3pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA38BPB06 3', mRNA sequence
Length = 559
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 362 aaacaataaccaactggtt 344
>gb|CV249958.1|CV249958 WS01125.B21_N23 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_N23 3', mRNA sequence
Length = 692
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 430 aaacaataaccaactggtt 412
>gb|CV273885.1|CV273885 WS01712.B21_I02 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS01712_I02 3', mRNA sequence
Length = 755
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 413 aaacaataaccaactggtt 395
>gb|CV275404.1|CV275404 WS0176.B21_F22 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0176_F22 3', mRNA sequence
Length = 808
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 440 aaacaataaccaactggtt 422
>gb|DN484894.1|DN484894 K034P26.3pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K034P26 3', mRNA sequence
Length = 780
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 400 aaacaataaccaactggtt 382
>gb|DN494372.1|DN494372 K034P26.5pR Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA clone K034P26 5', mRNA sequence
Length = 869
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 715 aaacaataaccaactggtt 733
>gb|DT479329.1|DT479329 WS02525.BR_I01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_I01 5', mRNA sequence
Length = 814
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 591 aaacaataaccaactggtt 609
>gb|DT483642.1|DT483642 WS02523.B21_C17 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02523_C17 3', mRNA sequence
Length = 844
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 516 aaacaataaccaactggtt 498
>gb|DT484468.1|DT484468 WS02525.B21_I01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_I01 3', mRNA sequence
Length = 880
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 424 aaacaataaccaactggtt 406
>gb|DT484508.1|DT484508 WS02525.B21_J20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_J20 3', mRNA sequence
Length = 736
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 424 aaacaataaccaactggtt 406
>gb|DT497230.1|DT497230 WS01125.BR_N23 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01125_N23 5', mRNA sequence
Length = 849
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 483 aaacaataaccaactggtt 501
>gb|DT510665.1|DT510665 WS02427.BR_D11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_D11 5', mRNA sequence
Length = 182
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 707 cttacatcttccctcgtgc 725
|||||||||||||||||||
Sbjct: 30 cttacatcttccctcgtgc 12
>gb|DT510759.1|DT510759 WS02427.BR_I11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_I11 5', mRNA sequence
Length = 912
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 553 aaacaataaccaactggtt 571
>gb|DT515424.1|DT515424 WS02427.B21_I11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_I11 3', mRNA sequence
Length = 855
Score = 38.2 bits (19), Expect = 0.45
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 179 aaacaataaccaactggtt 197
|||||||||||||||||||
Sbjct: 419 aaacaataaccaactggtt 401
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,317
Number of Sequences: 369679
Number of extensions: 79317
Number of successful extensions: 21683
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21653
Number of HSP's gapped (non-prelim): 30
length of query: 725
length of database: 203,408,664
effective HSP length: 19
effective length of query: 706
effective length of database: 196,384,763
effective search space: 138647642678
effective search space used: 138647642678
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)