BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748535.2.1
(619 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX173575.1|CX173575 F02_69-47_12.ab1 leaf inoculated wit... 98 5e-019
gb|CX179995.1|CX179995 E03_45-30_09.ab1 leaf inoculated wit... 98 5e-019
gb|CN518640.1|CN518640 GQ0103.B3_B21 GQ010 Populus trichoca... 90 1e-016
gb|CV268173.1|CV268173 WS0204.B21_M02 PTxN-IB-N-A-11 Populu... 90 1e-016
gb|CF936952.1|CF936952 PO3012D09 Populus tomentiglandulosa ... 90 1e-016
gb|CX178726.1|CX178726 F03_45-1_11.ab1 leaf inoculated with... 90 1e-016
gb|CX185263.1|CX185263 C10_45-118_06.ab1 leaf inoculated wi... 90 1e-016
gb|CX186437.1|CX186437 E12_45-118_10.ab1 leaf inoculated wi... 90 1e-016
gb|CA927208.1|CA927208 MTU6CR.P6.C08 Aspen root cDNA Librar... 84 7e-015
gb|DT506827.1|DT506827 WS02416.BR_J23 PTxD-ICC-N-A-14 Popul... 84 7e-015
gb|CX184516.1|CX184516 A02_45-70_02.ab1 leaf inoculated wit... 82 3e-014
gb|DT511495.1|DT511495 WS02416.B21_J23 PTxD-ICC-N-A-14 Popu... 42 0.025
gb|DT519151.1|DT519151 WS02440.B21_H07 PTxD-ICC-N-A-14 Popu... 42 0.025
gb|DT523499.1|DT523499 WS02039.B21_N19 PTxN-IB-N-A-11 Popul... 42 0.025
gb|DT517729.1|DT517729 WS02435.B21_C07 PTxD-ICC-N-A-14 Popu... 38 0.38
>gb|CX173575.1|CX173575 F02_69-47_12.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 695
Score = 97.6 bits (49), Expect = 5e-019
Identities = 100/117 (85%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
|||||| |||||||| |||||||||||||| |||||||||| |||||| || |||||||
Sbjct: 469 gaaggtgttggatgtaggatgtggaattggcggacctttaagagaaattgctcgattcag 528
Query: 394 ctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagga 450
||||||||| |||| || ||||||||||||| || || || |||||||| |||||
Sbjct: 529 ctcaacatcagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 585
>gb|CX179995.1|CX179995 E03_45-30_09.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 622
Score = 97.6 bits (49), Expect = 5e-019
Identities = 100/117 (85%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
|||||| |||||||| |||||||||||||| |||||||||| |||||| || |||||||
Sbjct: 462 gaaggtgttggatgtaggatgtggaattggcggacctttaagagaaattgctcgattcag 521
Query: 394 ctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagga 450
||||||||| |||| || ||||||||||||| || || || |||||||| |||||
Sbjct: 522 ctcaacatcagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 578
>gb|CN518640.1|CN518640 GQ0103.B3_B21 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0103_B21 5', mRNA sequence
Length = 280
Score = 89.7 bits (45), Expect = 1e-016
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
|||||| |||||||| |||||||||||||| || ||||||| |||||| || |||||||
Sbjct: 101 gaaggtgttggatgtaggatgtggaattggcgggcctttaagagaaattgctcgattcag 160
Query: 394 ctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagga 450
||||||||| |||| || ||||||||||||| || || || |||||||| |||||
Sbjct: 161 ctcaacatcagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 217
>gb|CV268173.1|CV268173 WS0204.B21_M02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0204_M02 3', mRNA sequence
Length = 911
Score = 89.7 bits (45), Expect = 1e-016
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
|||||| |||||||| |||||||||||||| || ||||||| |||||| || |||||||
Sbjct: 699 gaaggtgttggatgtaggatgtggaattggcgggcctttaagagaaattgctcgattcag 758
Query: 394 ctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagga 450
||||||||| |||| || ||||||||||||| || || || |||||||| |||||
Sbjct: 759 ctcaacatcagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 815
>gb|CF936952.1|CF936952 PO3012D09 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 1079
Score = 89.7 bits (45), Expect = 1e-016
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
|||||| |||||||| |||||||||||||| || ||||||| |||||| || |||||||
Sbjct: 405 gaaggtgttggatgtaggatgtggaattggcgggcctttaagagaaattgctcgattcag 464
Query: 394 ctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagga 450
||||||||| |||| || ||||||||||||| || || || |||||||| |||||
Sbjct: 465 ctcaacatcagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 521
Score = 38.2 bits (19), Expect = 0.38
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 522 ctgataacacctttgatgcggcctatgcaatacaggctacatgtcatgcaccagatgca 580
||||||||| |||||||| | |||||||| | ||||| || |||||||||||||||
Sbjct: 593 ctgataacatttttgatgctgtatatgcaattgaagctacctgccatgcaccagatgca 651
>gb|CX178726.1|CX178726 F03_45-1_11.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 619
Score = 89.7 bits (45), Expect = 1e-016
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
|||||| |||||||| |||||||||||||| || ||||||| |||||| || |||||||
Sbjct: 471 gaaggtgttggatgtaggatgtggaattggcgggcctttaagagaaattgctcgattcag 530
Query: 394 ctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagga 450
||||||||| |||| || ||||||||||||| || || || |||||||| |||||
Sbjct: 531 ctcaacatcagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 587
>gb|CX185263.1|CX185263 C10_45-118_06.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 660
Score = 89.7 bits (45), Expect = 1e-016
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
|||||| |||||||| |||||||||||||| || ||||||| |||||| || |||||||
Sbjct: 478 gaaggtgttggatgtaggatgtggaattggcgggcctttaagagaaattgctcgattcag 537
Query: 394 ctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagga 450
||||||||| |||| || ||||||||||||| || || || |||||||| |||||
Sbjct: 538 ctcaacatcagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 594
>gb|CX186437.1|CX186437 E12_45-118_10.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 669
Score = 89.7 bits (45), Expect = 1e-016
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
|||||| |||||||| |||||||||||||| || ||||||| |||||| || |||||||
Sbjct: 478 gaaggtgttggatgtaggatgtggaattggcgggcctttaagagaaattgctcgattcag 537
Query: 394 ctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaagga 450
||||||||| |||| || ||||||||||||| || || || |||||||| |||||
Sbjct: 538 ctcaacatcagtaacagggttgaacaacaatgagtatcagatatcaaggggaaagga 594
>gb|CA927208.1|CA927208 MTU6CR.P6.C08 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 684
Score = 83.8 bits (42), Expect = 7e-015
Identities = 102/122 (83%)
Strand = Plus / Minus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||||||||||||| |||||||||||||| |||||| | | |||||| || |||||||
Sbjct: 493 gaaggttttggatgtaggatgtggaattggtggacctcttagagaaattgcgcgattcag 434
Query: 394 ctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggagct 453
||||||||| |||| || |||||||||| || || || || |||||||| ||||| ||
Sbjct: 433 ctcaacatcagtaacagggttgaacaacaacgagtatcagatatcaaggggaaaggaact 374
Query: 454 ca 455
||
Sbjct: 373 ca 372
Score = 40.1 bits (20), Expect = 0.097
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 557 gctacatgtcatgcaccagatgca 580
|||||||| |||||||||||||||
Sbjct: 270 gctacatgccatgcaccagatgca 247
>gb|DT506827.1|DT506827 WS02416.BR_J23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_J23 5', mRNA sequence
Length = 861
Score = 83.8 bits (42), Expect = 7e-015
Identities = 102/122 (83%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
||||||||||||||| |||||||||||||| |||||| | | |||||| || |||||||
Sbjct: 533 gaaggttttggatgtaggatgtggaattggtggacctcttagagaaattgcgcgattcag 592
Query: 394 ctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggcaaggagct 453
||||||||| |||| || |||||||||| || || || || |||||||| ||||| ||
Sbjct: 593 ctcaacatcagtaacagggttgaacaacaacgagtatcagatatcaaggggaaaggaact 652
Query: 454 ca 455
||
Sbjct: 653 ca 654
Score = 40.1 bits (20), Expect = 0.097
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 557 gctacatgtcatgcaccagatgca 580
|||||||| |||||||||||||||
Sbjct: 756 gctacatgccatgcaccagatgca 779
>gb|CX184516.1|CX184516 A02_45-70_02.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 746
Score = 81.8 bits (41), Expect = 3e-014
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 334 gaaggttttggatgtgggatgtggaattgggggacctttaatagaaatcgccagattcag 393
|||||| |||||||| |||||||||||||| || ||||||| |||||| || |||||||
Sbjct: 490 gaaggtgttggatgtaggatgtggaattggcgggcctttaagagaaattgctcgattcag 549
Query: 394 ctcaacatcgataactggactgaacaacaatga 426
||||||||| |||| || |||||||||||||
Sbjct: 550 ctcaacatcagtaacagggttgaacaacaatga 582
>gb|DT511495.1|DT511495 WS02416.B21_J23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02416_J23 3', mRNA sequence
Length = 910
Score = 42.1 bits (21), Expect = 0.025
Identities = 57/69 (82%)
Strand = Plus / Minus
Query: 387 gattcagctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggca 446
|||||||||||||||| |||| || |||||||||| || || || || |||||||| |
Sbjct: 896 gattcagctcaacatcagtaacagggttgaacaacaacgagtatcagatatcaaggggaa 837
Query: 447 aggagctca 455
|||| ||||
Sbjct: 836 aggaactca 828
Score = 40.1 bits (20), Expect = 0.097
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 557 gctacatgtcatgcaccagatgca 580
|||||||| |||||||||||||||
Sbjct: 726 gctacatgccatgcaccagatgca 703
>gb|DT519151.1|DT519151 WS02440.B21_H07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02440_H07 3', mRNA sequence
Length = 900
Score = 42.1 bits (21), Expect = 0.025
Identities = 57/69 (82%)
Strand = Plus / Minus
Query: 387 gattcagctcaacatcgataactggactgaacaacaatgactaccacatctcaaggggca 446
|||||||||||||||| |||| || |||||||||| || || || || |||||||| |
Sbjct: 896 gattcagctcaacatcagtaacagggttgaacaacaacgagtatcagatatcaaggggaa 837
Query: 447 aggagctca 455
|||| ||||
Sbjct: 836 aggaactca 828
Score = 40.1 bits (20), Expect = 0.097
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 557 gctacatgtcatgcaccagatgca 580
|||||||| |||||||||||||||
Sbjct: 726 gctacatgccatgcaccagatgca 703
>gb|DT523499.1|DT523499 WS02039.B21_N19 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02039_N19 3', mRNA sequence
Length = 973
Score = 42.1 bits (21), Expect = 0.025
Identities = 67/81 (82%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 370 tttaatagaaatcgccagattcagctcaacatcgataactggactgaacaacaatgacta 429
||||| |||||| || |||||||||||||||| |||| || ||||||||||||| ||
Sbjct: 968 tttaagagaaattgctcgattcagctcaacatcagtaacagg-ttgaacaacaatgagta 910
Query: 430 ccacatctcaaggggcaagga 450
|| || |||||||| |||||
Sbjct: 909 tcagatatcaaggggaaagga 889
>gb|DT517729.1|DT517729 WS02435.B21_C07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02435_C07 3', mRNA sequence
Length = 919
Score = 38.2 bits (19), Expect = 0.38
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 368 cctttaatagaaatcgccagattcagctcaacatc 402
||||||| |||||| || ||||||||||||||||
Sbjct: 917 cctttaagagaaattgctcgattcagctcaacatc 883
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71,906
Number of Sequences: 369679
Number of extensions: 71906
Number of successful extensions: 18845
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18818
Number of HSP's gapped (non-prelim): 27
length of query: 619
length of database: 203,408,664
effective HSP length: 19
effective length of query: 600
effective length of database: 196,384,763
effective search space: 117830857800
effective search space used: 117830857800
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)