BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748501.2.2
(993 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA824881.1|CA824881 R49G12 two-month-old roots from clon... 58 7e-007
gb|AI163170.1|AI163170 A034p39u Hybrid aspen plasmid librar... 56 3e-006
gb|BI130965.1|BI130965 G113P33Y Populus cambium cDNA librar... 56 3e-006
gb|CV226522.1|CV226522 WS0164.B21_I06 PT-DX-A-7 Populus tri... 56 3e-006
gb|CV254823.1|CV254823 WS02411.B21_E17 PTxD-ICC-N-A-14 Popu... 56 3e-006
gb|CX183497.1|CX183497 G02_45-45_14.ab1 leaf inoculated wit... 56 3e-006
gb|DT475955.1|DT475955 WS0128.BR_M11 PT-GT-FL-A-3 Populus t... 56 3e-006
gb|DT499690.1|DT499690 WS9991.BR_B03 PT-P-FL-A-2 Populus tr... 56 3e-006
gb|DT516153.1|DT516153 WS02430.B21_I23 PTxD-ICC-N-A-14 Popu... 56 3e-006
gb|BU837295.1|BU837295 T097B06 Populus apical shoot cDNA li... 52 4e-005
gb|AI165319.1|AI165319 A081P18U Hybrid aspen plasmid librar... 50 2e-004
gb|CK116665.1|CK116665 B015P39 Hybrid aspen plasmid library... 46 0.003
gb|CF235467.1|CF235467 PtaJXT0023B6B0604 Poplar cDNA librar... 44 0.010
gb|CV238949.1|CV238949 WS0128.B21.1_M11 PT-GT-FL-A-3 Populu... 42 0.040
gb|CF234358.1|CF234358 Ptajxojxo1F12F1212 Poplar cDNA libra... 40 0.16
gb|CF235707.1|CF235707 PtaJXT0026B11B1103 Poplar cDNA libra... 40 0.16
gb|CF237292.1|CF237292 Ptajxtjxt4D10D1008 Poplar cDNA libra... 40 0.16
gb|CF237302.1|CF237302 Ptajxtjxt4D9D0907 Poplar cDNA librar... 40 0.16
gb|AJ767197.1|AJ767197 AJ767197 Populus euphratica leaf adu... 40 0.16
gb|CF936681.1|CF936681 PO3008H11 Populus tomentiglandulosa ... 40 0.16
gb|CF936757.1|CF936757 PO3009H07 Populus tomentiglandulosa ... 40 0.16
>gb|CA824881.1|CA824881 R49G12 two-month-old roots from clone 'Beaupre' Populus trichocarpa
x Populus deltoides cDNA 5', mRNA sequence
Length = 662
Score = 58.0 bits (29), Expect = 7e-007
Identities = 86/105 (81%)
Strand = Plus / Plus
Query: 167 tgcttcaagtgcagccactgcaaagggatcctctcgatgtgcagctactcttccatggac 226
|||||||| ||||||||||||||||| | || |||| ||| |||||| ||||||||
Sbjct: 243 tgcttcaaatgcagccactgcaaaggaactcttgtgatgagcaactactcatccatggat 302
Query: 227 ggtgtgctgtactgcaagacccacttcgagcagctcttcaaggag 271
|| || || ||||||||||| || || ||||| || |||||||||
Sbjct: 303 ggagtcctctactgcaagactcattttgagcaacttttcaaggag 347
>gb|AI163170.1|AI163170 A034p39u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 497
Score = 56.0 bits (28), Expect = 3e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 215 tcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaaggagacc 274
||||| ||||| ||||| ||||||| ||| | ||||| |||||||| ||||||||||||
Sbjct: 251 tcttcgatggagggtgtattgtactgtaagcctcactttgagcagctgttcaaggagacc 310
Query: 275 gggagcttctccaagaactt 294
|| | |||| |||||||||
Sbjct: 311 ggtaacttcaacaagaactt 330
>gb|BI130965.1|BI130965 G113P33Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 565
Score = 56.0 bits (28), Expect = 3e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 215 tcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaaggagacc 274
||||| ||||| ||||| ||||||| ||| | ||||| |||||||| ||||||||||||
Sbjct: 378 tcttcgatggagggtgtattgtactgtaagcctcactttgagcagctgttcaaggagacc 437
Query: 275 gggagcttctccaagaactt 294
|| | |||| |||||||||
Sbjct: 438 ggtaacttcaacaagaactt 457
>gb|CV226522.1|CV226522 WS0164.B21_I06 PT-DX-A-7 Populus trichocarpa cDNA clone WS0164_I06
3', mRNA sequence
Length = 862
Score = 56.0 bits (28), Expect = 3e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 215 tcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaaggagacc 274
||||| ||||| ||||| ||||||| ||| | ||||| |||||||| ||||||||||||
Sbjct: 670 tcttcgatggagggtgtattgtactgtaagcctcactttgagcagctgttcaaggagacc 611
Query: 275 gggagcttctccaagaactt 294
|| | |||| |||||||||
Sbjct: 610 ggtaacttcaacaagaactt 591
>gb|CV254823.1|CV254823 WS02411.B21_E17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02411_E17 3', mRNA sequence
Length = 942
Score = 56.0 bits (28), Expect = 3e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 215 tcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaaggagacc 274
||||| ||||| ||||| ||||||| ||| | ||||| |||||||| ||||||||||||
Sbjct: 683 tcttcgatggagggtgtattgtactgtaagcctcactttgagcagctgttcaaggagacc 624
Query: 275 gggagcttctccaagaactt 294
|| | |||| |||||||||
Sbjct: 623 ggtaacttcaacaagaactt 604
>gb|CX183497.1|CX183497 G02_45-45_14.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 626
Score = 56.0 bits (28), Expect = 3e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 215 tcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaaggagacc 274
||||| ||||| ||||| ||||||| ||| | ||||| |||||||| ||||||||||||
Sbjct: 390 tcttcgatggagggtgtattgtactgtaagcctcactttgagcagctgttcaaggagacc 449
Query: 275 gggagcttctccaagaactt 294
|| | |||| |||||||||
Sbjct: 450 ggtaacttcaacaagaactt 469
>gb|DT475955.1|DT475955 WS0128.BR_M11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_M11 5', mRNA sequence
Length = 454
Score = 56.0 bits (28), Expect = 3e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 215 tcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaaggagacc 274
||||| ||||| ||||| ||||||| ||| | ||||| |||||||| ||||||||||||
Sbjct: 296 tcttcgatggagggtgtattgtactgtaagcctcactttgagcagctgttcaaggagacc 355
Query: 275 gggagcttctccaagaactt 294
|| | |||| |||||||||
Sbjct: 356 ggtaacttcaacaagaactt 375
>gb|DT499690.1|DT499690 WS9991.BR_B03 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01110_H14 5', mRNA sequence
Length = 535
Score = 56.0 bits (28), Expect = 3e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 215 tcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaaggagacc 274
||||| ||||| ||||| ||||||| ||| | ||||| |||||||| ||||||||||||
Sbjct: 296 tcttcgatggagggtgtattgtactgtaagcctcactttgagcagctgttcaaggagacc 355
Query: 275 gggagcttctccaagaactt 294
|| | |||| |||||||||
Sbjct: 356 ggtaacttcaacaagaactt 375
>gb|DT516153.1|DT516153 WS02430.B21_I23 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_I23 3', mRNA sequence
Length = 420
Score = 56.0 bits (28), Expect = 3e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 215 tcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaaggagacc 274
||||| ||||| ||||| ||||||| ||| | ||||| |||||||| ||||||||||||
Sbjct: 204 tcttcgatggagggtgtattgtactgtaagcctcactttgagcagctgttcaaggagacc 145
Query: 275 gggagcttctccaagaactt 294
|| | |||| |||||||||
Sbjct: 144 ggtaacttcaacaagaactt 125
>gb|BU837295.1|BU837295 T097B06 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 569
Score = 52.0 bits (26), Expect = 4e-005
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 215 tcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttcaaggagacc 274
||||| ||||| ||||| ||||||| ||| | ||||| |||||||| ||||||||||||
Sbjct: 398 tcttcgatggagggtgtattgtactgtaagcctcactttgagcagctgttcaaggagacc 457
Query: 275 gg 276
||
Sbjct: 458 gg 459
>gb|AI165319.1|AI165319 A081P18U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 374
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgggagcttctccaagaact 293
||||||| ||| | ||||| |||||||| |||||||||||||| | |||| ||||||||
Sbjct: 229 tgtactgtaagcctcactttgagcagctgttcaaggagaccggtaacttcaacaagaact 288
Query: 294 t 294
|
Sbjct: 289 t 289
>gb|CK116665.1|CK116665 B015P39 Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone B015P39 5', mRNA sequence
Length = 386
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 234 tgtactgcaagacccacttcgagcagctcttcaaggagaccgg 276
||||||| ||| | ||||| |||||||| ||||||||||||||
Sbjct: 270 tgtactgtaagcctcactttgagcagctgttcaaggagaccgg 312
>gb|CF235467.1|CF235467 PtaJXT0023B6B0604 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 689
Score = 44.1 bits (22), Expect = 0.010
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 221 atggacggtgtgctgtactgcaagacccacttcgagcagctcttcaaggagaccgggagc 280
||||| ||||| ||||||| ||| | ||||| || ||||| |||||||||||||| | |
Sbjct: 493 atggagggtgtattgtactgtaagcctcactttgaccagctgttcaaggagaccggtaac 552
Query: 281 ttctccaagaactt 294
||| |||||||||
Sbjct: 553 ttcaacaagaactt 566
>gb|CV238949.1|CV238949 WS0128.B21.1_M11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0128_M11 3', mRNA sequence
Length = 643
Score = 42.1 bits (21), Expect = 0.040
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 254 gagcagctcttcaaggagaccgggagcttctccaagaactt 294
|||||||| |||||||||||||| | |||| |||||||||
Sbjct: 642 gagcagctgttcaaggagaccggtaacttcaacaagaactt 602
>gb|CF234358.1|CF234358 Ptajxojxo1F12F1212 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 596
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaa 462
||||||||||||||||||||
Sbjct: 525 taccacaagagctgcttcaa 544
>gb|CF235707.1|CF235707 PtaJXT0026B11B1103 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 767
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaa 462
||||||||||||||||||||
Sbjct: 352 taccacaagagctgcttcaa 371
>gb|CF237292.1|CF237292 Ptajxtjxt4D10D1008 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaa 462
||||||||||||||||||||
Sbjct: 543 taccacaagagctgcttcaa 562
>gb|CF237302.1|CF237302 Ptajxtjxt4D9D0907 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 772
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaa 462
||||||||||||||||||||
Sbjct: 542 taccacaagagctgcttcaa 561
>gb|AJ767197.1|AJ767197 AJ767197 Populus euphratica leaf adult Populus euphratica cDNA
clone P0000100002G09F1, mRNA sequence
Length = 680
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 561 aggggagctacagccacatg 580
||||||||||||||||||||
Sbjct: 641 aggggagctacagccacatg 660
>gb|CF936681.1|CF936681 PO3008H11 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 937
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaa 462
||||||||||||||||||||
Sbjct: 467 taccacaagagctgcttcaa 486
>gb|CF936757.1|CF936757 PO3009H07 Populus tomentiglandulosa T. Lee cDNA library Populus
tomentiglandulosa cDNA, mRNA sequence
Length = 954
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 443 taccacaagagctgcttcaa 462
||||||||||||||||||||
Sbjct: 469 taccacaagagctgcttcaa 488
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 96,191
Number of Sequences: 369679
Number of extensions: 96191
Number of successful extensions: 29339
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29277
Number of HSP's gapped (non-prelim): 61
length of query: 993
length of database: 203,408,664
effective HSP length: 19
effective length of query: 974
effective length of database: 196,384,763
effective search space: 191278759162
effective search space used: 191278759162
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)