BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748394.2.2
(3527 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA924040.1|CA924040 MTU7CL.P1.A07 Aspen leaf cDNA Librar... 50 6e-004
gb|DN500621.1|DN500621 UL69F06.5pR Populus cold stressed le... 50 6e-004
gb|BI072708.1|BI072708 C084P86U Populus strain T89 leaves P... 46 0.009
gb|CK100777.1|CK100777 C084P86.5pR Populus strain T89 leave... 46 0.009
gb|CN523960.1|CN523960 GQ015M02.T3_A07 GQ015 Populus tricho... 42 0.14
>gb|CA924040.1|CA924040 MTU7CL.P1.A07 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 700
Score = 50.1 bits (25), Expect = 6e-004
Identities = 79/97 (81%)
Strand = Plus / Minus
Query: 1595 caagaccagacccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtc 1654
|||||||||| || || ||||||||||| || | |||| ||| |||||||| ||||| |
Sbjct: 376 caagaccagatcccaaaaagaacatcacaactttggtcacagcatttggagaatgtcggc 317
Query: 1655 cactcagggaacttgcaaaccttactctgatcatggg 1691
|| | || || ||||| ||||||||||| || |||||
Sbjct: 316 cattgagagagcttgctaaccttactctaattatggg 280
Score = 44.1 bits (22), Expect = 0.036
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1753 aagctgattgacaagtatgatctgta 1778
||||| ||||||||||||||||||||
Sbjct: 218 aagcttattgacaagtatgatctgta 193
>gb|DN500621.1|DN500621 UL69F06.5pR Populus cold stressed leaves cDNA library Populus tremula
x Populus tremuloides cDNA clone UL69F06 5', mRNA
sequence
Length = 789
Score = 50.1 bits (25), Expect = 6e-004
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 1595 caagaccagacccgaagaagaacatcactaccctcgtcaaagcgtttggagagtgtcgtc 1654
|||||||||| || || ||||||||||| || | |||| ||| |||||||| ||||| |
Sbjct: 101 caagaccagatcccaaaaagaacatcacaactttggtcacagcatttggagaatgtcggc 160
Query: 1655 cactcagggaacttgcaaaccttactctgatcatggg 1691
|| | || || ||||| ||||||||||| || |||||
Sbjct: 161 cattgagagagcttgctaaccttactctaattatggg 197
Score = 44.1 bits (22), Expect = 0.036
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1753 aagctgattgacaagtatgatctgta 1778
||||| ||||||||||||||||||||
Sbjct: 259 aagcttattgacaagtatgatctgta 284
>gb|BI072708.1|BI072708 C084P86U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 191
Score = 46.1 bits (23), Expect = 0.009
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 1118 tgaatgtgccaatggtgctcactggccactcacttgggaggaacaagctggaacaactgc 1177
|||||||||||||||| | || || ||||| || |||||||||||| | || || ||||
Sbjct: 87 tgaatgtgccaatggttttaacagggcactctctggggaggaacaagtttgagcanctgc 28
Query: 1178 tgaagcaagg 1187
| ||||||||
Sbjct: 27 tcaagcaagg 18
>gb|CK100777.1|CK100777 C084P86.5pR Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA clone C084P86 5', mRNA sequence
Length = 437
Score = 46.1 bits (23), Expect = 0.009
Identities = 108/135 (80%), Gaps = 1/135 (0%)
Strand = Plus / Minus
Query: 1053 gccttacgtgatacatgggcactatgccgatgctggagatgttgctgctctcctttctgg 1112
|||||| ||||| || || ||||| || |||||||| || || || || ||| | |||||
Sbjct: 209 gccttatgtgattcacggccactacgctgatgctggcgaagtggcagcactcttgtctgg 150
Query: 1113 tgcgctgaatgtgccaatggtgctcactggccactcacttgggaggaacaagctggaaca 1172
|| |||||||||||||||| | || || ||||| || |||||||||||| | || ||
Sbjct: 149 ggccttgaatgtgccaatggtttt-acagggcactctctggggaggaacaagtttgagca 91
Query: 1173 actgctgaagcaagg 1187
|||||| ||||||||
Sbjct: 90 actgctcaagcaagg 76
>gb|CN523960.1|CN523960 GQ015M02.T3_A07 GQ015 Populus trichocarpa x Populus deltoides cDNA
clone GQ015M02_A07 5', mRNA sequence
Length = 768
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 415 aagaagcagctggagctggag 435
|||||||||||||||||||||
Sbjct: 672 aagaagcagctggagctggag 652
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 370,198
Number of Sequences: 369679
Number of extensions: 370198
Number of successful extensions: 96770
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 96761
Number of HSP's gapped (non-prelim): 9
length of query: 3527
length of database: 203,408,664
effective HSP length: 20
effective length of query: 3507
effective length of database: 196,015,084
effective search space: 687424899588
effective search space used: 687424899588
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)