BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748380.2.1
(1272 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI135750.1|BI135750 F057P86Y Populus flower cDNA library... 64 1e-008
gb|BU869391.1|BU869391 M129E09 Populus flower cDNA library ... 64 1e-008
gb|BU875452.1|BU875452 V007C11 Populus flower cDNA library ... 64 1e-008
gb|BU883349.1|BU883349 UM89TD10 Populus flower cDNA library... 64 1e-008
gb|CK101433.1|CK101433 F057P86.5pR Populus flower cDNA libr... 64 1e-008
gb|AF185574.2| Populus tremuloides transcription factor MAG... 64 1e-008
gb|BI120936.1|BI120936 F025P39Y Populus flower cDNA library... 50 2e-004
gb|CK101151.1|CK101151 F025P39.5pR Populus flower cDNA libr... 50 2e-004
gb|BI139220.1|BI139220 F126P60Y Populus flower cDNA library... 44 0.013
gb|AF034093.2| Populus tremuloides PTM1 mRNA, complete cds 44 0.013
gb|AF034094.2| Populus tremuloides PTM2 mRNA, complete cds 44 0.013
gb|AY615964.1| Populus balsamifera subsp. trichocarpa APETA... 44 0.013
gb|AY615965.1| Populus balsamifera subsp. trichocarpa APETA... 44 0.013
gb|AY615966.1| Populus balsamifera subsp. trichocarpa APETA... 44 0.013
gb|BI138350.1|BI138350 F104P08Y Populus flower cDNA library... 42 0.051
gb|BI121441.1|BI121441 F036P89Y Populus flower cDNA library... 40 0.20
>gb|BI135750.1|BI135750 F057P86Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 390
Score = 63.9 bits (32), Expect = 1e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1145 gtcacctgccggtttatcttgttctctatccgcttcagct 1184
|||||||||| |||||||||||||||||||| ||||||||
Sbjct: 297 gtcacctgcctgtttatcttgttctctatcctcttcagct 258
>gb|BU869391.1|BU869391 M129E09 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 665
Score = 63.9 bits (32), Expect = 1e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1145 gtcacctgccggtttatcttgttctctatccgcttcagct 1184
|||||||||| |||||||||||||||||||| ||||||||
Sbjct: 92 gtcacctgcctgtttatcttgttctctatcctcttcagct 53
>gb|BU875452.1|BU875452 V007C11 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 697
Score = 63.9 bits (32), Expect = 1e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1145 gtcacctgccggtttatcttgttctctatccgcttcagct 1184
|||||||||| |||||||||||||||||||| ||||||||
Sbjct: 336 gtcacctgcctgtttatcttgttctctatcctcttcagct 297
>gb|BU883349.1|BU883349 UM89TD10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 558
Score = 63.9 bits (32), Expect = 1e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1145 gtcacctgccggtttatcttgttctctatccgcttcagct 1184
|||||||||| |||||||||||||||||||| ||||||||
Sbjct: 95 gtcacctgcctgtttatcttgttctctatcctcttcagct 56
>gb|CK101433.1|CK101433 F057P86.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F057P86 5', mRNA sequence
Length = 454
Score = 63.9 bits (32), Expect = 1e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1145 gtcacctgccggtttatcttgttctctatccgcttcagct 1184
|||||||||| |||||||||||||||||||| ||||||||
Sbjct: 298 gtcacctgcctgtttatcttgttctctatcctcttcagct 259
>gb|AF185574.2| Populus tremuloides transcription factor MAGL4 mRNA, complete cds
Length = 1195
Score = 63.9 bits (32), Expect = 1e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1145 gtcacctgccggtttatcttgttctctatccgcttcagct 1184
|||||||||| |||||||||||||||||||| ||||||||
Sbjct: 290 gtcacctgcctgtttatcttgttctctatcctcttcagct 251
>gb|BI120936.1|BI120936 F025P39Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 293
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 1139 gagaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgc 1198
||||| ||||| |||| ||| ||||||||||| ||||| |||||||| ||| |||| | |
Sbjct: 287 gagaacgtcacttgcctgttaatcttgttctcgatccgtttcagctgaaccctgcctctc 228
Query: 1199 cccat 1203
|||||
Sbjct: 227 cccat 223
>gb|CK101151.1|CK101151 F025P39.5pR Populus flower cDNA library Populus trichocarpa cDNA
clone F025P39 5', mRNA sequence
Length = 343
Score = 50.1 bits (25), Expect = 2e-004
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 1139 gagaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgc 1198
||||| ||||| |||| ||| ||||||||||| ||||| |||||||| ||| |||| | |
Sbjct: 281 gagaacgtcacttgcctgttaatcttgttctcgatccgtttcagctgaaccctgcctctc 222
Query: 1199 cccat 1203
|||||
Sbjct: 221 cccat 217
>gb|BI139220.1|BI139220 F126P60Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 457
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1148 acctgccggtttatcttgttctctat 1173
||||||||||| ||||||||||||||
Sbjct: 63 acctgccggttgatcttgttctctat 38
>gb|AF034093.2| Populus tremuloides PTM1 mRNA, complete cds
Length = 994
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1148 acctgccggtttatcttgttctctat 1173
||||||||||| ||||||||||||||
Sbjct: 75 acctgccggttgatcttgttctctat 50
>gb|AF034094.2| Populus tremuloides PTM2 mRNA, complete cds
Length = 969
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1148 acctgccggtttatcttgttctctat 1173
||||||||||| ||||||||||||||
Sbjct: 74 acctgccggttgatcttgttctctat 49
>gb|AY615964.1| Populus balsamifera subsp. trichocarpa APETALA1-like MADS-box PTAP1-1
mRNA, complete cds
Length = 942
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1148 acctgccggtttatcttgttctctat 1173
||||||||||| ||||||||||||||
Sbjct: 80 acctgccggttgatcttgttctctat 55
>gb|AY615965.1| Populus balsamifera subsp. trichocarpa APETALA1-like MADS-box
PTAP1-1a mRNA, complete cds; alternatively spliced
Length = 1344
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1148 acctgccggtttatcttgttctctat 1173
||||||||||| ||||||||||||||
Sbjct: 441 acctgccggttgatcttgttctctat 416
>gb|AY615966.1| Populus balsamifera subsp. trichocarpa APETALA1-like MADS-box PTAP1-2
mRNA, complete cds
Length = 1146
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1148 acctgccggtttatcttgttctctat 1173
||||||||||| ||||||||||||||
Sbjct: 219 acctgccggttgatcttgttctctat 194
>gb|BI138350.1|BI138350 F104P08Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 394
Score = 42.1 bits (21), Expect = 0.051
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 1139 gagaaggtcacctgccggtttatcttgttctctatccgcttcagctgcaccttgccgcgc 1198
||||| ||||| |||| | | ||||||||||| ||||| |||||||| ||| |||| | |
Sbjct: 279 gagaacgtcacttgcctggtaatcttgttctcgatccgtttcagctgaaccctgcctctc 220
Query: 1199 cccat 1203
|||||
Sbjct: 219 cccat 215
>gb|BI121441.1|BI121441 F036P89Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 254
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagctgcaccttgccgcgccccat 1203
||||||||||| ||||| |||||||| ||| |||| | ||||||
Sbjct: 246 atcttgttctcgatccgtttcagctgaaccctgcctctccccat 203
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 172,737
Number of Sequences: 369679
Number of extensions: 172737
Number of successful extensions: 46569
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46540
Number of HSP's gapped (non-prelim): 29
length of query: 1272
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1253
effective length of database: 196,384,763
effective search space: 246070108039
effective search space used: 246070108039
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)