BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713091.2.1
(1013 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ416708.1|PDE416708 Populus deltoides MER locus, genom... 42 0.041
gb|CK106655.1|CK106655 UB28CPB01.5pR Populus active cambium... 40 0.16
gb|BP924207.1|BP924207 BP924207 full-length enriched poplar... 40 0.16
gb|DT510824.1|DT510824 WS02427.BR_M01 PTxD-ICC-N-A-14 Popul... 40 0.16
gb|DT515507.1|DT515507 WS02427.B21_M01 PTxD-ICC-N-A-14 Popu... 40 0.16
>emb|AJ416708.1|PDE416708 Populus deltoides MER locus, genomic DNA, cultivar S9-2
Length = 95055
Score = 42.1 bits (21), Expect = 0.041
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 55 aacaagtagagcggtagagggaaaa 79
|||||||||||||||||||| ||||
Sbjct: 85172 aacaagtagagcggtagaggaaaaa 85196
>gb|CK106655.1|CK106655 UB28CPB01.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB28CPB01 5', mRNA sequence
Length = 613
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 44 tacaagccaagaacaagtag 63
||||||||||||||||||||
Sbjct: 458 tacaagccaagaacaagtag 477
>gb|BP924207.1|BP924207 BP924207 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-029_J09.f 5', mRNA sequence
Length = 350
Score = 40.1 bits (20), Expect = 0.16
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 456 ggaggaggagagggcggaga 475
||||||||||||||||||||
Sbjct: 145 ggaggaggagagggcggaga 164
>gb|DT510824.1|DT510824 WS02427.BR_M01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_M01 5', mRNA sequence
Length = 861
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 259 aagaaggtgcccgtgctcatccacaacggtaagcccatctgcgagtcactcgtcat 314
|||||||| || ||||| ||||||||||||| ||||||| || ||||| |||||
Sbjct: 149 aagaaggttcctgtgcttgtccacaacggtaaagccatctgtgaatcactagtcat 204
>gb|DT515507.1|DT515507 WS02427.B21_M01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_M01 3', mRNA sequence
Length = 884
Score = 40.1 bits (20), Expect = 0.16
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 259 aagaaggtgcccgtgctcatccacaacggtaagcccatctgcgagtcactcgtcat 314
|||||||| || ||||| ||||||||||||| ||||||| || ||||| |||||
Sbjct: 757 aagaaggttcctgtgcttgtccacaacggtaaagccatctgtgaatcactagtcat 702
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 92,319
Number of Sequences: 369679
Number of extensions: 92319
Number of successful extensions: 25797
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25773
Number of HSP's gapped (non-prelim): 24
length of query: 1013
length of database: 203,408,664
effective HSP length: 19
effective length of query: 994
effective length of database: 196,384,763
effective search space: 195206454422
effective search space used: 195206454422
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)