BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713074.2.1
(527 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU880106.1|BU880106 UM41TE06 Populus flower cDNA library... 40 0.082
gb|CV231236.1|CV231236 WS0193.B21_O22 PT-DX-N-A-10 Populus ... 40 0.082
gb|AI163783.1|AI163783 A048p31u Hybrid aspen plasmid librar... 38 0.33
gb|AI164568.1|AI164568 A065P12U Hybrid aspen plasmid librar... 38 0.33
gb|BI129239.1|BI129239 G087P80Y Populus cambium cDNA librar... 38 0.33
gb|CV240744.1|CV240744 WS02510.B21_D13 PT-MB-N-A-15 Populus... 38 0.33
gb|CV266869.1|CV266869 WS02030.B21_D05 PTxN-IB-N-A-11 Popul... 38 0.33
gb|CV274183.1|CV274183 WS0172.B21_H18 PTxD-NR-A-8 Populus t... 38 0.33
gb|DT516062.1|DT516062 WS02430.B21_E19 PTxD-ICC-N-A-14 Popu... 38 0.33
emb|AJ306826.1|PTR306826 Populus tremula x Populus tremuloi... 38 0.33
>gb|BU880106.1|BU880106 UM41TE06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 610
Score = 40.1 bits (20), Expect = 0.082
Identities = 62/76 (81%)
Strand = Plus / Plus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
|||| ||||||||||| | ||||||||||| || | ||||| ||||||||||| || |
Sbjct: 439 agggtacaagccgtccagctcattaccatgtactttgggatgagaacaagttcactgctg 498
Query: 143 atgctctgcagtctct 158
||| ||||||||||
Sbjct: 499 atgggttgcagtctct 514
>gb|CV231236.1|CV231236 WS0193.B21_O22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0193_O22 3', mRNA sequence
Length = 875
Score = 40.1 bits (20), Expect = 0.082
Identities = 62/76 (81%)
Strand = Plus / Minus
Query: 83 agggaacaagccgtcctacgcattaccatgtgctacgagatgacaacaagttcaccgcag 142
|||| ||||||||||| | ||||||||||| || | ||||| ||||||||||| || |
Sbjct: 556 agggtacaagccgtccagctcattaccatgtactttgggatgagaacaagttcactgctg 497
Query: 143 atgctctgcagtctct 158
||| ||||||||||
Sbjct: 496 atgggttgcagtctct 481
>gb|AI163783.1|AI163783 A048p31u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 392
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 470 tggaaggaaactgaaccta 488
|||||||||||||||||||
Sbjct: 237 tggaaggaaactgaaccta 255
>gb|AI164568.1|AI164568 A065P12U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 392
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 470 tggaaggaaactgaaccta 488
|||||||||||||||||||
Sbjct: 245 tggaaggaaactgaaccta 263
>gb|BI129239.1|BI129239 G087P80Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 230
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 470 tggaaggaaactgaaccta 488
|||||||||||||||||||
Sbjct: 101 tggaaggaaactgaaccta 119
>gb|CV240744.1|CV240744 WS02510.B21_D13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02510_D13 3', mRNA sequence
Length = 771
Score = 38.2 bits (19), Expect = 0.33
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 415 atgcagtagcttcacacttggtt 437
||||||||||||||| |||||||
Sbjct: 124 atgcagtagcttcactcttggtt 102
>gb|CV266869.1|CV266869 WS02030.B21_D05 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02030_D05 3', mRNA sequence
Length = 895
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 470 tggaaggaaactgaaccta 488
|||||||||||||||||||
Sbjct: 506 tggaaggaaactgaaccta 488
>gb|CV274183.1|CV274183 WS0172.B21_H18 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0172_H18 3', mRNA sequence
Length = 786
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 470 tggaaggaaactgaaccta 488
|||||||||||||||||||
Sbjct: 472 tggaaggaaactgaaccta 454
>gb|DT516062.1|DT516062 WS02430.B21_E19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02430_E19 3', mRNA sequence
Length = 696
Score = 38.2 bits (19), Expect = 0.33
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 415 atgcagtagcttcacacttggtt 437
||||||||||||||| |||||||
Sbjct: 44 atgcagtagcttcactcttggtt 22
>emb|AJ306826.1|PTR306826 Populus tremula x Populus tremuloides mRNA for aux/IAA protein
(IAA3 gene)
Length = 712
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 470 tggaaggaaactgaaccta 488
|||||||||||||||||||
Sbjct: 288 tggaaggaaactgaaccta 306
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,952
Number of Sequences: 369679
Number of extensions: 51952
Number of successful extensions: 13935
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13925
Number of HSP's gapped (non-prelim): 10
length of query: 527
length of database: 203,408,664
effective HSP length: 19
effective length of query: 508
effective length of database: 196,384,763
effective search space: 99763459604
effective search space used: 99763459604
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)