BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712967.2.1
(571 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT475245.1|DT475245 WS0126.BR_I02 PT-GT-FL-A-3 Populus t... 46 0.001
gb|DT477205.1|DT477205 WS02519.BR_E16 PT-MB-N-A-15 Populus ... 46 0.001
gb|DT489382.1|DT489382 WS02542.B21_B05 PT-MB-N-A-15 Populus... 44 0.006
gb|BI126966.1|BI126966 I083P82P Populus leaf cDNA library P... 42 0.023
gb|CV246288.1|CV246288 WS0111.B21_O13 PT-P-FL-A-2 Populus t... 42 0.023
gb|DT479292.1|DT479292 WS02525.BR_G02 PT-MB-N-A-15 Populus ... 42 0.023
gb|DT493614.1|DT493614 WS0111.BR_O13 PT-P-FL-A-2 Populus tr... 42 0.023
gb|CX171544.1|CX171544 B10_69-86_04.ab1 leaf inoculated wit... 40 0.089
gb|CX186337.1|CX186337 H07_45-15_15.ab1 leaf inoculated wit... 40 0.089
gb|DT469301.1|DT469301 WS01917.C21_F16 PT-DX-N-A-10 Populus... 40 0.089
gb|DT478316.1|DT478316 WS02522.BR_H03 PT-MB-N-A-15 Populus ... 40 0.089
gb|BU820373.1|BU820373 UA54DPE01 Populus tremula cambium cD... 38 0.35
gb|BU867965.1|BU867965 M106E06 Populus flower cDNA library ... 38 0.35
gb|CK106109.1|CK106109 UA54DPE01.5pR Populus dormant cambiu... 38 0.35
gb|CV240192.1|CV240192 WS0234.B21_L02 PT-MB-A-13 Populus tr... 38 0.35
gb|CV240517.1|CV240517 WS0251.B21_J14 PT-MB-N-A-15 Populus ... 38 0.35
gb|CV240601.1|CV240601 WS0251.B21_N10 PT-MB-N-A-15 Populus ... 38 0.35
gb|CV240667.1|CV240667 WS02510.B21_A05 PT-MB-N-A-15 Populus... 38 0.35
gb|CV241793.1|CV241793 WS02513.B21_E03 PT-MB-N-A-15 Populus... 38 0.35
gb|CV242387.1|CV242387 WS02514.B21.1_O18 PT-MB-N-A-15 Popul... 38 0.35
gb|CV244070.1|CV244070 WS0253.B21_K06 PT-MB-N-A-15 Populus ... 38 0.35
gb|CV265610.1|CV265610 WS02027.B21_M02 PTxN-IB-N-A-11 Popul... 38 0.35
gb|CX179390.1|CX179390 H07_45-48_15.ab1 leaf inoculated wit... 38 0.35
gb|CX185473.1|CX185473 C12_45-35_06.ab1 leaf inoculated wit... 38 0.35
gb|CX185976.1|CX185976 F10_45-40_12.ab1 leaf inoculated wit... 38 0.35
gb|DT476071.1|DT476071 WS01228.B21_D04 PT-GT-FL-A-3 Populus... 38 0.35
gb|DT476194.1|DT476194 WS01228.B21_K17 PT-GT-FL-A-3 Populus... 38 0.35
gb|DT477267.1|DT477267 WS02519.BR_H10 PT-MB-N-A-15 Populus ... 38 0.35
gb|DT478565.1|DT478565 WS02523.BR_C05 PT-MB-N-A-15 Populus ... 38 0.35
gb|DT481591.1|DT481591 WS02532.BR_F06 PT-MB-N-A-15 Populus ... 38 0.35
gb|DT482305.1|DT482305 WS02519.B21_H10 PT-MB-N-A-15 Populus... 38 0.35
gb|DT483630.1|DT483630 WS02523.B21_C05 PT-MB-N-A-15 Populus... 38 0.35
gb|DT488315.1|DT488315 WS02536.B21_B10 PT-MB-N-A-15 Populus... 38 0.35
gb|DT524518.1|DT524518 WS02042.C21.1_N22 PTxN-IB-N-A-11 Pop... 38 0.35
gb|DT526014.1|DT526014 WS02046.C21_O09 PTxN-IB-N-A-11 Popul... 38 0.35
>gb|DT475245.1|DT475245 WS0126.BR_I02 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0126_I02 5', mRNA sequence
Length = 596
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaagt 53
|||||||||||||||||||||||
Sbjct: 302 cagcagcagcaacagcaacaagt 324
>gb|DT477205.1|DT477205 WS02519.BR_E16 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_E16 5', mRNA sequence
Length = 764
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaagt 53
|||||||||||||||||||||||
Sbjct: 265 cagcagcagcaacagcaacaagt 287
>gb|DT489382.1|DT489382 WS02542.B21_B05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02542_B05 3', mRNA sequence
Length = 931
Score = 44.1 bits (22), Expect = 0.006
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 30 ccagcagcagcaacagcaacaa 51
||||||||||||||||||||||
Sbjct: 797 ccagcagcagcaacagcaacaa 776
>gb|BI126966.1|BI126966 I083P82P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 186
Score = 42.1 bits (21), Expect = 0.023
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 126 cagcagcagcaacagcaacaa 146
>gb|CV246288.1|CV246288 WS0111.B21_O13 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0111_O13 3', mRNA sequence
Length = 334
Score = 42.1 bits (21), Expect = 0.023
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 43 cagcagcagcaacagcaacaa 23
>gb|DT479292.1|DT479292 WS02525.BR_G02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02525_G02 5', mRNA sequence
Length = 828
Score = 42.1 bits (21), Expect = 0.023
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 695 cagcagcagcaacagcaacaa 715
>gb|DT493614.1|DT493614 WS0111.BR_O13 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0111_O13
5', mRNA sequence
Length = 303
Score = 42.1 bits (21), Expect = 0.023
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 261 cagcagcagcaacagcaacaa 281
>gb|CX171544.1|CX171544 B10_69-86_04.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 623
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 39 cagcagcagcaacagcaaca 58
>gb|CX186337.1|CX186337 H07_45-15_15.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 58 cagcagcagcaacagcaaca 77
>gb|DT469301.1|DT469301 WS01917.C21_F16 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01917_F16 3', mRNA sequence
Length = 627
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 565 cagcagcagcaacagcaaca 546
>gb|DT478316.1|DT478316 WS02522.BR_H03 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02522_H03 5', mRNA sequence
Length = 897
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 122 cagcagcagcaacagcaaca 141
>gb|BU820373.1|BU820373 UA54DPE01 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 520
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 32 agcagcagcaacagcaaca 50
|||||||||||||||||||
Sbjct: 486 agcagcagcaacagcaaca 504
>gb|BU867965.1|BU867965 M106E06 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 743
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 33 gcagcagcaacagcaacaa 51
|||||||||||||||||||
Sbjct: 288 gcagcagcaacagcaacaa 306
>gb|CK106109.1|CK106109 UA54DPE01.5pR Populus dormant cambium cDNA library Populus tremula
cDNA clone UA54DPE01 5', mRNA sequence
Length = 579
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 32 agcagcagcaacagcaaca 50
|||||||||||||||||||
Sbjct: 510 agcagcagcaacagcaaca 528
>gb|CV240192.1|CV240192 WS0234.B21_L02 PT-MB-A-13 Populus trichocarpa cDNA clone WS0234_L02
3', mRNA sequence
Length = 702
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 35 agcagcaacagcaacaagt 53
|||||||||||||||||||
Sbjct: 315 agcagcaacagcaacaagt 297
>gb|CV240517.1|CV240517 WS0251.B21_J14 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_J14 3', mRNA sequence
Length = 849
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 gcagcagcaacagcaacaa 51
|||||||||||||||||||
Sbjct: 722 gcagcagcaacagcaacaa 704
>gb|CV240601.1|CV240601 WS0251.B21_N10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_N10 3', mRNA sequence
Length = 875
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 32 agcagcagcaacagcaaca 50
|||||||||||||||||||
Sbjct: 289 agcagcagcaacagcaaca 271
>gb|CV240667.1|CV240667 WS02510.B21_A05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02510_A05 3', mRNA sequence
Length = 717
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 361 cagcagcagcaacagcaac 343
>gb|CV241793.1|CV241793 WS02513.B21_E03 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02513_E03 3', mRNA sequence
Length = 817
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 35 agcagcaacagcaacaagt 53
|||||||||||||||||||
Sbjct: 369 agcagcaacagcaacaagt 351
>gb|CV242387.1|CV242387 WS02514.B21.1_O18 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02514_O18 3', mRNA sequence
Length = 867
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 gcagcagcaacagcaacaa 51
|||||||||||||||||||
Sbjct: 722 gcagcagcaacagcaacaa 704
>gb|CV244070.1|CV244070 WS0253.B21_K06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0253_K06 3', mRNA sequence
Length = 813
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 gcagcagcaacagcaacaa 51
|||||||||||||||||||
Sbjct: 725 gcagcagcaacagcaacaa 707
>gb|CV265610.1|CV265610 WS02027.B21_M02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02027_M02 3', mRNA sequence
Length = 848
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 gcagcagcaacagcaacaa 51
|||||||||||||||||||
Sbjct: 744 gcagcagcaacagcaacaa 726
>gb|CX179390.1|CX179390 H07_45-48_15.ab1 leaf inoculated with Marssonia pathogen of
Populus euramericana Populus x canadensis cDNA, mRNA
sequence
Length = 443
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 48 cagcagcagcaacagcaac 66
>gb|CX185473.1|CX185473 C12_45-35_06.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 525
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 381 cagcagcagcaacagcaac 399
>gb|CX185976.1|CX185976 F10_45-40_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 645
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 32 agcagcagcaacagcaaca 50
|||||||||||||||||||
Sbjct: 517 agcagcagcaacagcaaca 535
>gb|DT476071.1|DT476071 WS01228.B21_D04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_D04 3', mRNA sequence
Length = 931
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 gcagcagcaacagcaacaa 51
|||||||||||||||||||
Sbjct: 720 gcagcagcaacagcaacaa 702
>gb|DT476194.1|DT476194 WS01228.B21_K17 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01228_K17 3', mRNA sequence
Length = 926
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 gcagcagcaacagcaacaa 51
|||||||||||||||||||
Sbjct: 720 gcagcagcaacagcaacaa 702
>gb|DT477267.1|DT477267 WS02519.BR_H10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_H10 5', mRNA sequence
Length = 421
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 38 cagcagcagcaacagcaac 56
>gb|DT478565.1|DT478565 WS02523.BR_C05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02523_C05 5', mRNA sequence
Length = 933
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 33 gcagcagcaacagcaacaa 51
|||||||||||||||||||
Sbjct: 513 gcagcagcaacagcaacaa 531
>gb|DT481591.1|DT481591 WS02532.BR_F06 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02532_F06 5', mRNA sequence
Length = 829
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 gcagcagcaacagcaacaa 51
|||||||||||||||||||
Sbjct: 699 gcagcagcaacagcaacaa 681
>gb|DT482305.1|DT482305 WS02519.B21_H10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02519_H10 3', mRNA sequence
Length = 422
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaac 49
|||||||||||||||||||
Sbjct: 385 cagcagcagcaacagcaac 367
>gb|DT483630.1|DT483630 WS02523.B21_C05 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02523_C05 3', mRNA sequence
Length = 854
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 gcagcagcaacagcaacaa 51
|||||||||||||||||||
Sbjct: 723 gcagcagcaacagcaacaa 705
>gb|DT488315.1|DT488315 WS02536.B21_B10 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02536_B10 3', mRNA sequence
Length = 867
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 gcagcagcaacagcaacaa 51
|||||||||||||||||||
Sbjct: 722 gcagcagcaacagcaacaa 704
>gb|DT524518.1|DT524518 WS02042.C21.1_N22 PTxN-IB-N-A-11 Populus trichocarpa x Populus
nigra cDNA clone WS02042_N22 3', mRNA sequence
Length = 749
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 gcagcagcaacagcaacaa 51
|||||||||||||||||||
Sbjct: 732 gcagcagcaacagcaacaa 714
>gb|DT526014.1|DT526014 WS02046.C21_O09 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_O09 3', mRNA sequence
Length = 879
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 gcagcagcaacagcaacaa 51
|||||||||||||||||||
Sbjct: 634 gcagcagcaacagcaacaa 616
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 52,457
Number of Sequences: 369679
Number of extensions: 52457
Number of successful extensions: 18673
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18567
Number of HSP's gapped (non-prelim): 106
length of query: 571
length of database: 203,408,664
effective HSP length: 19
effective length of query: 552
effective length of database: 196,384,763
effective search space: 108404389176
effective search space used: 108404389176
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)