BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712941.2.1
(1473 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CV274273.1|CV274273 WS0172.B21_M01 PTxD-NR-A-8 Populus t... 66 4e-009
gb|DN485453.1|DN485453 N005G05.3pR Populus bark cDNA librar... 62 6e-008
gb|CX169214.1|CX169214 H01_69-102_15.ab1 leaf inoculated wi... 46 0.004
>gb|CV274273.1|CV274273 WS0172.B21_M01 PTxD-NR-A-8 Populus trichocarpa x Populus deltoides
cDNA clone WS0172_M01 3', mRNA sequence
Length = 835
Score = 65.9 bits (33), Expect = 4e-009
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 823 cacttataagggtggtggtgacgaggaccgagattgacatgcaatatatcaaggcagagt 882
||||||||||||| | ||||| ||||| |||||||||||||| ||||| || || || |
Sbjct: 391 cacttataagggtaattgtgacaaggactgagattgacatgcattatataaaagctgaat 332
Query: 883 acttgaagaagtataagaagccatt 907
| ||||||||||| |||||| ||||
Sbjct: 331 atttgaagaagtacaagaagacatt 307
>gb|DN485453.1|DN485453 N005G05.3pR Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA clone N005G05 3', mRNA sequence
Length = 848
Score = 61.9 bits (31), Expect = 6e-008
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 825 cttataagggtggtggtgacgaggaccgagattgacatgcaatatatcaaggcagagtac 884
||||||||||| | ||||| ||||| |||||||||||||||||||| || || |||||
Sbjct: 425 cttataagggtaattgtgacaaggactgagattgacatgcaatatataaaagctgagtat 366
Query: 885 ttgaagaagta 895
||||||||||
Sbjct: 365 ctgaagaagta 355
>gb|CX169214.1|CX169214 H01_69-102_15.ab1 leaf inoculated with Marssonia pathogen of
Populus deltoides Populus deltoides cDNA, mRNA sequence
Length = 636
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 825 cttataagggtggtggtgacgaggaccgagattgacatgcaatatat 871
||||||||||| | ||||| ||||| ||||| ||||||||||||||
Sbjct: 395 cttataagggtaattgtgacaaggactgagatcgacatgcaatatat 349
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 166,170
Number of Sequences: 369679
Number of extensions: 166170
Number of successful extensions: 41393
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41389
Number of HSP's gapped (non-prelim): 4
length of query: 1473
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1454
effective length of database: 196,384,763
effective search space: 285543445402
effective search space used: 285543445402
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)