BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3665490.2.1
(1289 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ775830.1|AJ775830 AJ775830 Populus euphratica root 3-6... 44 0.013
gb|BP923310.1|BP923310 BP923310 full-length enriched poplar... 44 0.013
gb|CX177738.1|CX177738 F08_45-11_12.ab1 leaf inoculated wit... 42 0.052
gb|CX177923.1|CX177923 C08_45-10_06.ab1 leaf inoculated wit... 42 0.052
gb|CX179147.1|CX179147 H06_45-30_16.ab1 leaf inoculated wit... 42 0.052
gb|CX180817.1|CX180817 E12_45-116_10.ab1 leaf inoculated wi... 42 0.052
gb|CX184724.1|CX184724 E04_45-9_10.ab1 leaf inoculated with... 42 0.052
gb|CX185948.1|CX185948 D03_45-95_07.ab1 leaf inoculated wit... 42 0.052
gb|CX186219.1|CX186219 H03_45-84_15.ab1 leaf inoculated wit... 42 0.052
gb|BP923385.1|BP923385 BP923385 full-length enriched poplar... 42 0.052
gb|BP924491.1|BP924491 BP924491 full-length enriched poplar... 42 0.052
gb|BP924726.1|BP924726 BP924726 full-length enriched poplar... 42 0.052
gb|BP926736.1|BP926736 BP926736 full-length enriched poplar... 42 0.052
gb|BP926750.1|BP926750 BP926750 full-length enriched poplar... 42 0.052
gb|BP927111.1|BP927111 BP927111 full-length enriched poplar... 42 0.052
gb|BP927422.1|BP927422 BP927422 full-length enriched poplar... 42 0.052
gb|BP929497.1|BP929497 BP929497 full-length enriched poplar... 42 0.052
gb|BP922375.1|BP922375 BP922375 full-length enriched poplar... 40 0.21
gb|BP929231.1|BP929231 BP929231 full-length enriched poplar... 40 0.21
gb|DV465234.1|DV465234 MTUNUL1.P36.H10 NUL Populus fremonti... 40 0.21
>gb|AJ775830.1|AJ775830 AJ775830 Populus euphratica root 3-6 months Populus euphratica cDNA
clone P0000400006B01F1, mRNA sequence
Length = 593
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 997 aagcagtcgtggaagtggagcc 1018
||||||||||||||||||||||
Sbjct: 210 aagcagtcgtggaagtggagcc 189
>gb|BP923310.1|BP923310 BP923310 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-018_B09.f 5', mRNA sequence
Length = 481
Score = 44.1 bits (22), Expect = 0.013
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggagc 1017
||||| || |||||||||||||||||||||
Sbjct: 240 ccctgaacaaagcagtcgtggaagtggagc 211
>gb|CX177738.1|CX177738 F08_45-11_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 620
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| || ||||||||||||||||||||
Sbjct: 245 ccctgaacaaagcagtcgtggaagtggag 217
>gb|CX177923.1|CX177923 C08_45-10_06.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 678
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| || ||||||||||||||||||||
Sbjct: 244 ccctgaacaaagcagtcgtggaagtggag 216
>gb|CX179147.1|CX179147 H06_45-30_16.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| || ||||||||||||||||||||
Sbjct: 244 ccctgaacaaagcagtcgtggaagtggag 216
>gb|CX180817.1|CX180817 E12_45-116_10.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 701
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| || ||||||||||||||||||||
Sbjct: 265 ccctgaacaaagcagtcgtggaagtggag 237
>gb|CX184724.1|CX184724 E04_45-9_10.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 634
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| || ||||||||||||||||||||
Sbjct: 245 ccctgaacaaagcagtcgtggaagtggag 217
>gb|CX185948.1|CX185948 D03_45-95_07.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| || ||||||||||||||||||||
Sbjct: 247 ccctgaacaaagcagtcgtggaagtggag 219
>gb|CX186219.1|CX186219 H03_45-84_15.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 606
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| || ||||||||||||||||||||
Sbjct: 218 ccctgaacaaagcagtcgtggaagtggag 190
>gb|BP923385.1|BP923385 BP923385 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-018_M13.f 5', mRNA sequence
Length = 298
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| || ||||||||||||||||||||
Sbjct: 264 ccctgtacaaagcagtcgtggaagtggag 236
>gb|BP924491.1|BP924491 BP924491 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-032_K22.f 5', mRNA sequence
Length = 369
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| || ||||||||||||||||||||
Sbjct: 263 ccctgaacaaagcagtcgtggaagtggag 235
>gb|BP924726.1|BP924726 BP924726 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-035_N18.f 5', mRNA sequence
Length = 293
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| || ||||||||||||||||||||
Sbjct: 264 ccctgaacaaagcagtcgtggaagtggag 236
>gb|BP926736.1|BP926736 BP926736 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-062_O12.f 5', mRNA sequence
Length = 339
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| || ||||||||||||||||||||
Sbjct: 265 ccctgaacaaagcagtcgtggaagtggag 237
>gb|BP926750.1|BP926750 BP926750 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-063_A03.f 5', mRNA sequence
Length = 430
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| || ||||||||||||||||||||
Sbjct: 336 ccctgaacaaagcagtcgtggaagtggag 308
>gb|BP927111.1|BP927111 BP927111 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-067_O17.f 5', mRNA sequence
Length = 208
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| || ||||||||||||||||||||
Sbjct: 199 ccctgaacaaagcagtcgtggaagtggag 171
>gb|BP927422.1|BP927422 BP927422 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-071_G07.f 5', mRNA sequence
Length = 307
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| || ||||||||||||||||||||
Sbjct: 151 ccctgaacaaagcagtcgtggaagtggag 123
>gb|BP929497.1|BP929497 BP929497 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-098_H06.f 5', mRNA sequence
Length = 391
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 988 ccctgcacgaagcagtcgtggaagtggag 1016
||||| || ||||||||||||||||||||
Sbjct: 331 ccctgaacaaagcagtcgtggaagtggag 303
>gb|BP922375.1|BP922375 BP922375 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-007_A21.f 5', mRNA sequence
Length = 277
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 997 aagcagtcgtggaagtggag 1016
||||||||||||||||||||
Sbjct: 254 aagcagtcgtggaagtggag 235
>gb|BP929231.1|BP929231 BP929231 full-length enriched poplar cDNA library Populus nigra cDNA
clone PnFL1-094_P05.f 5', mRNA sequence
Length = 437
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 997 aagcagtcgtggaagtggag 1016
||||||||||||||||||||
Sbjct: 397 aagcagtcgtggaagtggag 378
>gb|DV465234.1|DV465234 MTUNUL1.P36.H10 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 933
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 823 gcgacgatgtcggcgcaggagacg 846
|||| |||||||||||||||||||
Sbjct: 506 gcgaggatgtcggcgcaggagacg 483
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 75,962
Number of Sequences: 369679
Number of extensions: 75962
Number of successful extensions: 18357
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18337
Number of HSP's gapped (non-prelim): 20
length of query: 1289
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1270
effective length of database: 196,384,763
effective search space: 249408649010
effective search space used: 249408649010
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)