BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3642920.2.1
(570 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU837261.1|BU837261 T096G03 Populus apical shoot cDNA li... 60 1e-007
gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Librar... 48 4e-004
gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Librar... 48 4e-004
gb|CB176640.1|CB176640 PopSC00063 Poplar SC cDNA library Po... 48 4e-004
gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus... 48 4e-004
gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal libra... 44 0.006
gb|AJ778757.1|AJ778757 AJ778757 Populus euphratica cambium ... 44 0.006
gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Popul... 44 0.006
gb|AY124702.1| Populus alba glycosyl transferase protein A ... 44 0.006
gb|AY278316.1| Populus alba ecotype 6K3 glycosyl transferas... 44 0.006
gb|CK088786.1|CK088786 A072P42.3pR Hybrid aspen plasmid lib... 40 0.089
gb|AI164749.1|AI164749 A068P23U Hybrid aspen plasmid librar... 38 0.35
gb|CK099450.1|CK099450 A068P23.5pR Hybrid aspen plasmid lib... 38 0.35
gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Popul... 38 0.35
>gb|BU837261.1|BU837261 T096G03 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 632
Score = 60.0 bits (30), Expect = 1e-007
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 171 attgttgaggtgaaaggtgttcatcaatttgattggttaacacaagaaaatgttcctgta 230
||||| || |||||||||||||| || ||||||||||||||| ||| |||||||| ||
Sbjct: 1 attgtggaagtgaaaggtgttcaccagtttgattggttaacaagagagaatgttccagtg 60
Query: 231 cttgaa 236
||||||
Sbjct: 61 cttgaa 66
>gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 48.1 bits (24), Expect = 4e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 426 cttgatgatgatgttgttgtccag 449
||||||||||||||||||||||||
Sbjct: 67 cttgatgatgatgttgttgtccag 90
>gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 48.1 bits (24), Expect = 4e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 426 cttgatgatgatgttgttgtccag 449
||||||||||||||||||||||||
Sbjct: 67 cttgatgatgatgttgttgtccag 90
>gb|CB176640.1|CB176640 PopSC00063 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00063, mRNA sequence
Length = 473
Score = 48.1 bits (24), Expect = 4e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 426 cttgatgatgatgttgttgtccag 449
||||||||||||||||||||||||
Sbjct: 59 cttgatgatgatgttgttgtccag 82
>gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_I09 3', mRNA sequence
Length = 904
Score = 48.1 bits (24), Expect = 4e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 426 cttgatgatgatgttgttgtccag 449
||||||||||||||||||||||||
Sbjct: 904 cttgatgatgatgttgttgtccag 881
>gb|CK318930.1|CK318930 X9P04h10 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 628
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 390 cctgagttgttcccaagcctcaacaa 415
|||||||||||||||||||| |||||
Sbjct: 48 cctgagttgttcccaagcctaaacaa 73
>gb|AJ778757.1|AJ778757 AJ778757 Populus euphratica cambium 3-6 months Populus euphratica
cDNA clone P0000600005G03F1, mRNA sequence
Length = 435
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 390 cctgagttgttcccaagcctcaacaa 415
|||||||||||||||||||| |||||
Sbjct: 138 cctgagttgttcccaagcctaaacaa 163
>gb|CV263738.1|CV263738 WS02022.B21_K12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_K12 3', mRNA sequence
Length = 937
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 420 gtatttcttgatgatgatgttgttgt 445
|||||||||||||||||||| |||||
Sbjct: 720 gtatttcttgatgatgatgtagttgt 695
>gb|AY124702.1| Populus alba glycosyl transferase protein A gene, partial cds
Length = 808
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 420 gtatttcttgatgatgatgttgttgt 445
|||||||||||||||||||| |||||
Sbjct: 621 gtatttcttgatgatgatgtggttgt 646
>gb|AY278316.1| Populus alba ecotype 6K3 glycosyl transferase protein A gene,
partial cds
Length = 804
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 420 gtatttcttgatgatgatgttgttgt 445
|||||||||||||||||||| |||||
Sbjct: 619 gtatttcttgatgatgatgtggttgt 644
>gb|CK088786.1|CK088786 A072P42.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A072P42 3', mRNA sequence
Length = 453
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 214 aagaaaatgttcctgtactt 233
||||||||||||||||||||
Sbjct: 49 aagaaaatgttcctgtactt 68
>gb|AI164749.1|AI164749 A068P23U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 375
Score = 38.2 bits (19), Expect = 0.35
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 489 aaggttaatggcgctgttgagacttgc 515
||||| ||||| |||||||||||||||
Sbjct: 281 aaggtgaatggagctgttgagacttgc 307
>gb|CK099450.1|CK099450 A068P23.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A068P23 5', mRNA sequence
Length = 579
Score = 38.2 bits (19), Expect = 0.35
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 489 aaggttaatggcgctgttgagacttgc 515
||||| ||||| |||||||||||||||
Sbjct: 325 aaggtgaatggagctgttgagacttgc 351
>gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_M05 3', mRNA sequence
Length = 718
Score = 38.2 bits (19), Expect = 0.35
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 489 aaggttaatggcgctgttgagacttgc 515
||||| ||||| |||||||||||||||
Sbjct: 677 aaggtgaatggagctgttgagacttgc 651
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 81,952
Number of Sequences: 369679
Number of extensions: 81952
Number of successful extensions: 23516
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23498
Number of HSP's gapped (non-prelim): 18
length of query: 570
length of database: 203,408,664
effective HSP length: 19
effective length of query: 551
effective length of database: 196,384,763
effective search space: 108208004413
effective search space used: 108208004413
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)