BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3561840.2.1
(1168 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU878009.1|BU878009 V042A05 Populus flower cDNA library ... 70 2e-010
gb|BU882965.1|BU882965 UM84TE12 Populus flower cDNA library... 70 2e-010
gb|AY359607.1| Populus yunnanensis sex male AGAMOUS (AG2) g... 68 8e-010
gb|AY359609.1| Populus tomentosa sex female AGAMOUS (AG2) g... 68 8e-010
gb|BU882889.1|BU882889 UM83TF04 Populus flower cDNA library... 60 2e-007
gb|DN484153.1|DN484153 PTRI27.5pR Populus cDNA, trichocarpa... 60 2e-007
gb|DN501305.1|DN501305 UM83TF04.5pR Populus female catkins ... 60 2e-007
gb|DT509633.1|DT509633 WS02424.BR_E10 PTxD-ICC-N-A-14 Popul... 60 2e-007
gb|DT510612.1|DT510612 WS02427.BR_A17 PTxD-ICC-N-A-14 Popul... 60 2e-007
gb|AF052571.1|AF052571 Populus balsamifera subsp. trichocar... 60 2e-007
gb|BU883614.1|BU883614 UM95TA01 Populus flower cDNA library... 54 1e-005
gb|DN491294.1|DN491294 UM83TF04.3pR Populus female catkins ... 52 5e-005
gb|AF052570.1|AF052570 Populus balsamifera subsp. trichocar... 52 5e-005
gb|AY359611.1| Populus tomentosa sex male AGAMOUS (AG2) gen... 52 5e-005
gb|AY359612.1| Populus tomentosa sex male AGAMOUS (AG1) gen... 52 5e-005
gb|CV256507.1|CV256507 WS0244.B21_A19 PTxD-ICC-N-A-14 Popul... 50 2e-004
gb|DT517651.1|DT517651 WS02434.B21_O16 PTxD-ICC-N-A-14 Popu... 50 2e-004
gb|DT520688.1|DT520688 WS02448.B21_E04 PTxD-ICC-N-A-14 Popu... 50 2e-004
gb|CN519626.1|CN519626 GQ0104.B3_J10 GQ010 Populus trichoca... 44 0.012
gb|AY359608.1| Populus yunnanensis sex male AGAMOUS (AG1) g... 44 0.012
gb|AY359610.1| Populus tomentosa sex female AGAMOUS (AG1) g... 44 0.012
gb|BU879372.1|BU879372 V059D02 Populus flower cDNA library ... 40 0.19
gb|BU879741.1|BU879741 V063H01 Populus flower cDNA library ... 40 0.19
gb|BP933759.1|BP933759 BP933759 full-length enriched poplar... 40 0.19
>gb|BU878009.1|BU878009 V042A05 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 278
Score = 69.9 bits (35), Expect = 2e-010
Identities = 170/215 (79%)
Strand = Plus / Plus
Query: 105 tggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacct 164
|||||||||||| | | ||||||||| |||||||||||| ||| | || || ||||| |
Sbjct: 56 tggggaggggaaaggtggagatcaagcggatcgagaacaccaccaatcgccaagtcactt 115
Query: 165 tctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacg 224
||||||| | || ||||| | |||||||| || || || | || || || ||||| |
Sbjct: 116 tctgcaaaaggcggaatggtttgctcaagaaagcctatgaattatctgttctttgcgatg 175
Query: 225 ccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaaca 284
| ||||| || ||| |||||||||||||||| |||||||| || |||||| | ||||| |
Sbjct: 176 ctgaggttgcactcatcgtcttctccagccgtggacgcctttatgagtactctaacaata 235
Query: 285 gtgtgaaggctacgatcgagaggtacaagaaggca 319
|||| || |||| || || |||||||| ||||||
Sbjct: 236 gtgtcaaatctacaattgaaaggtacaaaaaggca 270
>gb|BU882965.1|BU882965 UM84TE12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 562
Score = 69.9 bits (35), Expect = 2e-010
Identities = 170/215 (79%)
Strand = Plus / Plus
Query: 105 tggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacct 164
|||||||||||| | | ||||||||| |||||||||||| ||| | || || ||||| |
Sbjct: 197 tggggaggggaaaggtggagatcaagcggatcgagaacaccaccaatcgccaagtcactt 256
Query: 165 tctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacg 224
||||||| | || ||||| | |||||||| || || || | || || || ||||| |
Sbjct: 257 tctgcaaaaggcggaatggtttgctcaagaaagcctatgaattatctgttctttgcgatg 316
Query: 225 ccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaaca 284
| ||||| || ||| |||||||||||||||| |||||||| || |||||| | ||||| |
Sbjct: 317 ctgaggttgcactcatcgtcttctccagccgtggacgcctttatgagtactctaacaata 376
Query: 285 gtgtgaaggctacgatcgagaggtacaagaaggca 319
|||| || |||| || || |||||||| ||||||
Sbjct: 377 gtgtcaaatctacaattgaaaggtacaaaaaggca 411
>gb|AY359607.1| Populus yunnanensis sex male AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 67.9 bits (34), Expect = 8e-010
Identities = 136/170 (80%)
Strand = Plus / Plus
Query: 105 tggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacct 164
|||||||||||| | | ||||||||| |||||||||||| ||| | || || ||||| |
Sbjct: 47 tggggaggggaaaggtggagatcaagcggatcgagaacaccaccaatcgccaagtcactt 106
Query: 165 tctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacg 224
||||||| | || ||||| | |||||||| || || || | ||||| || ||||| |
Sbjct: 107 tctgcaaaaggcggaatggtttgctcaagaaagcctatgaattatccgttctttgcgatg 166
Query: 225 ccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtac 274
| ||||| || ||| |||||||||||||||| |||||||| || ||||||
Sbjct: 167 ctgaggttgcactcatcgtcttctccagccgtggacgcctttatgagtac 216
>gb|AY359609.1| Populus tomentosa sex female AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 67.9 bits (34), Expect = 8e-010
Identities = 136/170 (80%)
Strand = Plus / Plus
Query: 105 tggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacct 164
|||||||||||| | | ||||||||| |||||||||||| ||| | || || ||||| |
Sbjct: 47 tggggaggggaaaggtggagatcaagcggatcgagaacaccaccaatcgccaagtcactt 106
Query: 165 tctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacg 224
||||||| | || ||||| | |||||||| || || || | ||||| || ||||| |
Sbjct: 107 tctgcaaaaggcggaatggtttgctcaagaaagcctatgaattatccgttctttgcgatg 166
Query: 225 ccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtac 274
| ||||| || ||| |||||||||||||||| |||||||| || ||||||
Sbjct: 167 ctgaggttgcactcatcgtcttctccagccgtggacgcctttatgagtac 216
>gb|BU882889.1|BU882889 UM83TF04 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 588
Score = 60.0 bits (30), Expect = 2e-007
Identities = 144/182 (79%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||| || |||| ||| |||||||||||||||||||||| ||| | || ||||| ||
Sbjct: 104 catgggaagaggaaagatcgagatcaagaggatcgagaacaccaccaatcgtcaggttac 163
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
||||||||| | | ||||||||| | ||||| || || || | || || || || ||
Sbjct: 164 tttctgcaagaggagaaatgggctcttgaagaaagcttatgaattatcagttctatgtga 223
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
|| || || || ||| |||||||||| ||||| || || ||||| ||||||||||||||
Sbjct: 224 tgctgaagttgctctcatcgtcttctctagccgtggccgtctctatgagtacgccaacaa 283
Query: 283 ca 284
||
Sbjct: 284 ca 285
>gb|DN484153.1|DN484153 PTRI27.5pR Populus cDNA, trichocarpa shoot library Populus
trichocarpa cDNA clone PTRI27 5', mRNA sequence
Length = 381
Score = 60.0 bits (30), Expect = 2e-007
Identities = 84/102 (82%)
Strand = Plus / Plus
Query: 218 tgcgacgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgcc 277
||||| || ||||| || ||| |||||||||||||||| |||||||| || |||||| |
Sbjct: 263 tgcgatgctgaggttgcactcatcgtcttctccagccgtggacgcctttatgagtactct 322
Query: 278 aacaacagtgtgaaggctacgatcgagaggtacaagaaggca 319
||||| ||||| || |||| || || |||||||| ||||||
Sbjct: 323 aacaatagtgtcaaatctacaattgaaaggtacaaaaaggca 364
>gb|DN501305.1|DN501305 UM83TF04.5pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM83TF04 5', mRNA sequence
Length = 860
Score = 60.0 bits (30), Expect = 2e-007
Identities = 144/182 (79%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||| || |||| ||| |||||||||||||||||||||| ||| | || ||||| ||
Sbjct: 88 catgggaagaggaaagatcgagatcaagaggatcgagaacaccaccaatcgtcaggttac 147
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
||||||||| | | ||||||||| | ||||| || || || | || || || || ||
Sbjct: 148 tttctgcaagaggagaaatgggctcttgaagaaagcttatgaattatcagttctatgtga 207
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
|| || || || ||| |||||||||| ||||| || || ||||| ||||||||||||||
Sbjct: 208 tgctgaagttgctctcatcgtcttctctagccgtggccgtctctatgagtacgccaacaa 267
Query: 283 ca 284
||
Sbjct: 268 ca 269
>gb|DT509633.1|DT509633 WS02424.BR_E10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02424_E10 5', mRNA sequence
Length = 905
Score = 60.0 bits (30), Expect = 2e-007
Identities = 144/182 (79%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||| || |||| |||||||||||||||||||||||||| |||| || ||||| ||
Sbjct: 64 catgggaagaggaaagattgagatcaagaggatcgagaacactacgaatcgtcaggttac 123
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
||||||||| | | |||||||| | ||||| || || || | || ||||| || ||
Sbjct: 124 tttctgcaagagaagaaatgggctgttgaagaaagcctatgaattatctgtcctttgtga 183
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
|| || || | ||| |||||||||| ||||| || || ||||| ||||||||||||||
Sbjct: 184 tgctgaagtttccctcatcgtcttctctagccgtggccgtctctatgagtacgccaacaa 243
Query: 283 ca 284
||
Sbjct: 244 ca 245
>gb|DT510612.1|DT510612 WS02427.BR_A17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02427_A17 5', mRNA sequence
Length = 920
Score = 60.0 bits (30), Expect = 2e-007
Identities = 144/182 (79%)
Strand = Plus / Plus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||| || |||| |||||||||||||||||||||||||| |||| || ||||| ||
Sbjct: 68 catgggaagaggaaagattgagatcaagaggatcgagaacactacgaatcgtcaggttac 127
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
||||||||| | | |||||||| | ||||| || || || | || ||||| || ||
Sbjct: 128 tttctgcaagagaagaaatgggctgttgaagaaagcctatgaattatctgtcctttgtga 187
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
|| || || | ||| |||||||||| ||||| || || ||||| ||||||||||||||
Sbjct: 188 tgctgaagtttccctcatcgtcttctctagccgtggccgtctctatgagtacgccaacaa 247
Query: 283 ca 284
||
Sbjct: 248 ca 249
>gb|AF052571.1|AF052571 Populus balsamifera subsp. trichocarpa AGAMOUS homolog (PTAG2) gene,
complete cds
Length = 10007
Score = 60.0 bits (30), Expect = 2e-007
Identities = 135/170 (79%)
Strand = Plus / Plus
Query: 105 tggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacct 164
|||||||||||| | | ||||||||| |||||||||||| ||| | || || ||||| |
Sbjct: 2973 tggggaggggaaaggtggagatcaagcggatcgagaacaccaccaatcgccaagtcactt 3032
Query: 165 tctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacg 224
||||||| | || ||||| | |||||||| || || || | || || || ||||| |
Sbjct: 3033 tctgcaaaaggcggaatggtttgctcaagaaagcctatgaattatctgttctttgcgatg 3092
Query: 225 ccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtac 274
| ||||| || ||| |||||||||||||||| |||||||| || ||||||
Sbjct: 3093 ctgaggttgcactcatcgtcttctccagccgtggacgcctttatgagtac 3142
>gb|BU883614.1|BU883614 UM95TA01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 613
Score = 54.0 bits (27), Expect = 1e-005
Identities = 168/215 (78%)
Strand = Plus / Plus
Query: 105 tggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacct 164
|||| ||||||| | | ||||||||| |||||||||||| ||| | || || ||||| |
Sbjct: 274 tgggaaggggaaaggtggagatcaagcggatcgagaacaccaccaatcgccaagtcactt 333
Query: 165 tctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacg 224
||||||| | |||| ||| | |||||||| || ||||| | || || || ||||| |
Sbjct: 334 tctgcaaaaggcgcagtggtttgctcaagaaagcctacgaattatctgttctttgcgatg 393
Query: 225 ccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaaca 284
| ||||| || ||| |||||||||| |||||||| ||||| || |||||| | ||| | |
Sbjct: 394 ctgaggttgcactcatcgtcttctctagccgcggtcgcctttatgagtactctaacgata 453
Query: 285 gtgtgaaggctacgatcgagaggtacaagaaggca 319
|||| || | || || ||||||||||| ||||||
Sbjct: 454 gtgtcaaatcaacaattgagaggtacaaaaaggca 488
>gb|DN491294.1|DN491294 UM83TF04.3pR Populus female catkins cDNA library Populus
trichocarpa cDNA clone UM83TF04 3', mRNA sequence
Length = 813
Score = 52.0 bits (26), Expect = 5e-005
Identities = 144/182 (79%), Gaps = 1/182 (0%)
Strand = Plus / Minus
Query: 103 catggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcac 162
|||||| || |||| ||| |||||||||||||||||||||| ||| | || ||||| ||
Sbjct: 758 catgggaagaggaaagatcgagatcaagaggatcgagaacaccaccaatcgtcaggt-ac 700
Query: 163 cttctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcga 222
||||||||| | | ||||||||| | ||||| || || || | || || || || ||
Sbjct: 699 tttctgcaagaggagaaatgggctcttgaagaaagcttatgaattatcagttctatgtga 640
Query: 223 cgccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtacgccaacaa 282
|| || || || ||| |||||||||| ||||| || || ||||| ||||||||||||||
Sbjct: 639 tgctgaagttgctctcatcgtcttctctagccgtggccgtctctatgagtacgccaacaa 580
Query: 283 ca 284
||
Sbjct: 579 ca 578
>gb|AF052570.1|AF052570 Populus balsamifera subsp. trichocarpa AGAMOUS homolog (PTAG1) gene,
complete cds
Length = 11485
Score = 52.0 bits (26), Expect = 5e-005
Identities = 134/170 (78%)
Strand = Plus / Plus
Query: 105 tggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacct 164
|||| ||||||| | | ||||||||| |||||||||||| ||| | || || ||||| |
Sbjct: 3116 tgggaaggggaaaggtggagatcaagcggatcgagaacaccaccaatcgccaagtcactt 3175
Query: 165 tctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacg 224
||||||| | |||| ||| | |||||||| || ||||| | || || || ||||| |
Sbjct: 3176 tctgcaaaaggcgcagtggtttgctcaagaaagcctacgaattatctgttctttgcgatg 3235
Query: 225 ccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtac 274
| ||||| || ||| |||||||||| |||||||| ||||| || ||||||
Sbjct: 3236 ctgaggttgcactcatcgtcttctctagccgcggtcgcctttatgagtac 3285
>gb|AY359611.1| Populus tomentosa sex male AGAMOUS (AG2) gene, partial cds
Length = 227
Score = 52.0 bits (26), Expect = 5e-005
Identities = 134/170 (78%)
Strand = Plus / Plus
Query: 105 tggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacct 164
|||||||||||| | | ||||||||| |||||||||||| ||| | || || ||||| |
Sbjct: 47 tggggaggggaaaggtggagatcaagcggatcgagaacaccacaaatcgccaagtcactt 106
Query: 165 tctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacg 224
||||||| | || ||||| | |||||||| || || || | || || || || || |
Sbjct: 107 tctgcaaaaggcggaatggtttgctcaagaaagcctatgaattatctgttctttgtgatg 166
Query: 225 ccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtac 274
| ||||| || ||| |||||||||||||||| |||||||| || ||||||
Sbjct: 167 ctgaggttgcactcatcgtcttctccagccgtggacgcctttatgagtac 216
>gb|AY359612.1| Populus tomentosa sex male AGAMOUS (AG1) gene, partial cds
Length = 227
Score = 52.0 bits (26), Expect = 5e-005
Identities = 134/170 (78%)
Strand = Plus / Plus
Query: 105 tggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacct 164
|||| ||||||| | | ||||||||| |||||||||||| ||| | || || ||||| |
Sbjct: 47 tgggaaggggaaaggtggagatcaagcggatcgagaacaccaccaatcgccaagtcactt 106
Query: 165 tctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacg 224
||||||| | |||| ||| | |||||||| || ||||| | || || || || || |
Sbjct: 107 tctgcaaaaggcgcagtggtttgctcaagaaagcctacgaattatctgttctttgtgatg 166
Query: 225 ccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtac 274
| ||||| || ||| |||||||||||||||| |||||||| || ||||||
Sbjct: 167 ctgaggttgcactcatcgtcttctccagccgtggacgcctttatgagtac 216
>gb|CV256507.1|CV256507 WS0244.B21_A19 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0244_A19 3', mRNA sequence
Length = 877
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 240 tcgtcttctccagccgcggacgcctctacgagtacgccaacaaca 284
|||||||||| ||||| || || ||||| ||||||||||||||||
Sbjct: 851 tcgtcttctctagccgtggccgtctctatgagtacgccaacaaca 807
>gb|DT517651.1|DT517651 WS02434.B21_O16 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_O16 3', mRNA sequence
Length = 924
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 240 tcgtcttctccagccgcggacgcctctacgagtacgccaacaaca 284
|||||||||| ||||| || || ||||| ||||||||||||||||
Sbjct: 854 tcgtcttctctagccgtggccgtctctatgagtacgccaacaaca 810
>gb|DT520688.1|DT520688 WS02448.B21_E04 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_E04 3', mRNA sequence
Length = 897
Score = 50.1 bits (25), Expect = 2e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 240 tcgtcttctccagccgcggacgcctctacgagtacgccaacaaca 284
|||||||||| ||||| || || ||||| ||||||||||||||||
Sbjct: 852 tcgtcttctctagccgtggccgtctctatgagtacgccaacaaca 808
>gb|CN519626.1|CN519626 GQ0104.B3_J10 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0104_J10 5', mRNA sequence
Length = 751
Score = 44.1 bits (22), Expect = 0.012
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 153 ggcaggtcaccttctgcaagcgccgcaatgggctcctcaagaaggc 198
||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct: 111 ggcaggttaccttctgcaagcgccgagcagggctccttaagaaggc 156
>gb|AY359608.1| Populus yunnanensis sex male AGAMOUS (AG1) gene, partial cds
Length = 227
Score = 44.1 bits (22), Expect = 0.012
Identities = 133/170 (78%)
Strand = Plus / Plus
Query: 105 tggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacct 164
|||| ||||||| | | ||||||||| |||||||||||| ||| | || || ||||| |
Sbjct: 47 tgggaaggggaaaggtggagatcaagcggatcgagaacaccaccaatcgccaagtcactt 106
Query: 165 tctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacg 224
||||||| | |||| ||| | |||||||| || ||||| | || || || ||||| |
Sbjct: 107 tctgcaaaaggcgcagtggtttgctcaagaaagcctacgaattatctgttctttgcgatg 166
Query: 225 ccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtac 274
| ||||| || ||| |||||||||| | |||||| ||||| || ||||||
Sbjct: 167 ctgaggttgcactcatcgtcttctctacccgcggtcgcctttatgagtac 216
>gb|AY359610.1| Populus tomentosa sex female AGAMOUS (AG1) gene, partial cds
Length = 227
Score = 44.1 bits (22), Expect = 0.012
Identities = 133/170 (78%)
Strand = Plus / Plus
Query: 105 tggggaggggaaggattgagatcaagaggatcgagaacaacacgagccggcaggtcacct 164
|||| ||||||| | | ||||||||| |||||||||||| ||| | || || ||||| |
Sbjct: 47 tgggaaggggaaaggtggagatcaagcggatcgagaacaccaccaatcgccaagtcactt 106
Query: 165 tctgcaagcgccgcaatgggctcctcaagaaggcgtacgagctctccgtcctctgcgacg 224
||||||| | |||| ||| | |||||||| || ||||| | || || || ||||| |
Sbjct: 107 tctgcaaaaggcgcagtggtttgctcaagaaagcctacgaattatctgttctttgcgatg 166
Query: 225 ccgaggtggcgctcgtcgtcttctccagccgcggacgcctctacgagtac 274
| ||||| || ||| |||||||||| | |||||| ||||| || ||||||
Sbjct: 167 ctgaggttgcactcatcgtcttctctacccgcggtcgcctttatgagtac 216
>gb|BU879372.1|BU879372 V059D02 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 642
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 104 atggggaggggaaggattgagatcaagaggat 135
|||||||| || | ||||||||||||||||||
Sbjct: 74 atggggagaggtaagattgagatcaagaggat 105
>gb|BU879741.1|BU879741 V063H01 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 540
Score = 40.1 bits (20), Expect = 0.19
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 104 atggggaggggaaggattgagatcaagaggat 135
|||||||| || | ||||||||||||||||||
Sbjct: 87 atggggagaggtaagattgagatcaagaggat 118
>gb|BP933759.1|BP933759 BP933759 full-length enriched poplar cDNA library Populus nigra
cDNA clone PnFL1-056_D11.r 3', mRNA sequence
Length = 619
Score = 40.1 bits (20), Expect = 0.19
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 44 aaaccactttgcttgcaagt 63
||||||||||||||||||||
Sbjct: 438 aaaccactttgcttgcaagt 457
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 147,419
Number of Sequences: 369679
Number of extensions: 147419
Number of successful extensions: 39389
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 39324
Number of HSP's gapped (non-prelim): 66
length of query: 1168
length of database: 203,408,664
effective HSP length: 19
effective length of query: 1149
effective length of database: 196,384,763
effective search space: 225646092687
effective search space used: 225646092687
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)