BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3536697.2.1
(651 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI130649.1|BI130649 G108P73Y Populus cambium cDNA librar... 113 9e-024
gb|BI137576.1|BI137576 F088P66Y Populus flower cDNA library... 113 9e-024
gb|BU825809.1|BU825809 UK113TD01 Populus apical shoot cDNA ... 113 9e-024
gb|DT476310.1|DT476310 WS01229.B21_B21 PT-GT-FL-A-3 Populus... 113 9e-024
gb|DT487290.1|DT487290 WS02533.B21_E19 PT-MB-N-A-15 Populus... 113 9e-024
gb|DT519855.1|DT519855 WS02443.B21_N22 PTxD-ICC-N-A-14 Popu... 113 9e-024
gb|BI129436.1|BI129436 G090P66Y Populus cambium cDNA librar... 105 2e-021
gb|BI137782.1|BI137782 F093P42Y Populus flower cDNA library... 105 2e-021
gb|CA928550.1|CA928550 MTU6TR.P4.A02 Aspen root cDNA Librar... 98 5e-019
gb|CN550551.1|CN550551 GQ0242.B3_J13 GQ024 Populus trichoca... 98 5e-019
gb|CV233669.1|CV233669 WS01211.B21_O21 PT-GT-FL-A-3 Populus... 98 5e-019
gb|CV237262.1|CV237262 WS01227.B21.1_C10 PT-GT-FL-A-3 Popul... 98 5e-019
gb|CV242276.1|CV242276 WS02514.B21.1_J24 PT-MB-N-A-15 Popul... 98 5e-019
gb|CV247664.1|CV247664 WS01118.B21_O19 PT-P-FL-A-2 Populus ... 98 5e-019
gb|DT489199.1|DT489199 WS02538.B21_J01 PT-MB-N-A-15 Populus... 98 5e-019
gb|DT494608.1|DT494608 WS01118.BR.1_O19 PT-P-FL-A-2 Populus... 98 5e-019
gb|CX653431.1|CX653431 PO02001G11 Poplar SC cDNA library Po... 92 3e-017
gb|CA928802.1|CA928802 MTU6TR.P7.A07 Aspen root cDNA Librar... 90 1e-016
gb|CV247264.1|CV247264 WS01117.B21_J07 PT-P-FL-A-2 Populus ... 90 1e-016
gb|CN522526.1|CN522526 GQ0121.B3_F24 GQ012 Populus trichoca... 84 8e-015
gb|BU834862.1|BU834862 T066F04 Populus apical shoot cDNA li... 82 3e-014
gb|CK098211.1|CK098211 A007P62.5pR Hybrid aspen plasmid lib... 78 5e-013
gb|BI119774.1|BI119774 F005P05Y Populus flower cDNA library... 76 2e-012
gb|BI130663.1|BI130663 G108P95Y Populus cambium cDNA librar... 66 2e-009
gb|CF232400.1|CF232400 PtaJXO0010A5H0816 Poplar cDNA librar... 62 3e-008
gb|BI129897.1|BI129897 G097P09Y Populus cambium cDNA librar... 54 7e-006
gb|BI135440.1|BI135440 F051P45Y Populus flower cDNA library... 54 7e-006
gb|CV251224.1|CV251224 WS0116.B21_E05 PT-P-FL-A-2 Populus t... 54 7e-006
gb|DT492733.1|DT492733 WS02552.C21_C13 PT-MB-N-A-15 Populus... 54 7e-006
gb|AI161839.1|AI161839 A007P62U Hybrid aspen plasmid librar... 52 3e-005
gb|BU884377.1|BU884377 R009G11 Populus root cDNA library Po... 52 3e-005
gb|CK091807.1|CK091807 F127P19.3pR Populus flower cDNA libr... 52 3e-005
gb|CV234257.1|CV234257 WS01214.B21_D24 PT-GT-FL-A-3 Populus... 52 3e-005
gb|CV236293.1|CV236293 WS01223.B21_J13 PT-GT-FL-A-3 Populus... 52 3e-005
gb|DT499631.1|DT499631 WS0118.BR_N17 PT-P-FL-A-2 Populus tr... 50 1e-004
gb|CV277427.1|CV277427 WS0143.B21_I24 PTxD-IL-A-5 Populus t... 48 4e-004
gb|CV230060.1|CV230060 WS01915.B21_E22 PT-DX-N-A-10 Populus... 46 0.002
gb|CV241062.1|CV241062 WS02511.B21_B22 PT-MB-N-A-15 Populus... 46 0.002
gb|CV246813.1|CV246813 WS01116.B21_A16 PT-P-FL-A-2 Populus ... 46 0.002
gb|DT469792.1|DT469792 WS01918.C21_O11 PT-DX-N-A-10 Populus... 46 0.002
gb|DN493626.1|DN493626 G073P36.5pR Populus tension wood cDN... 44 0.007
gb|DT523430.1|DT523430 WS02039.B21_K21 PTxN-IB-N-A-11 Popul... 44 0.007
gb|CV238302.1|CV238302 WS0126.B21_B10 PT-GT-FL-A-3 Populus ... 38 0.40
>gb|BI130649.1|BI130649 G108P73Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 370
Score = 113 bits (57), Expect = 9e-024
Identities = 165/201 (82%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 3 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 62
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||||| || ||
Sbjct: 63 agttttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacat 122
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || ||||||| |||||| ||||| |||||||||
Sbjct: 123 gtagggcctttcaatcttggaaatccaggtgaattcaccatgctcgagcttgctaaggtg 182
Query: 186 gtccaggacaccatcgaccca 206
|||||||| ||||| ||||||
Sbjct: 183 gtccaggaaaccattgaccca 203
>gb|BI137576.1|BI137576 F088P66Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 469
Score = 113 bits (57), Expect = 9e-024
Identities = 162/197 (82%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||| ||| |||| || ||||||||||| || |||||||||
Sbjct: 112 gttgctcaggcactgaggaaggaacctatgactgtttatggtgatgggaaacagactagg 171
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||||| || ||
Sbjct: 172 agttttcaatttgtttctgatttggttgagggcctgatgcgccttatggaaggagaacat 231
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || ||||||| |||||| ||||| ||| |||||
Sbjct: 232 gtagggcctttcaatcttgggaatccgggtgaattcaccatgcttgagcttgctcaggtg 291
Query: 186 gtccaggacaccatcga 202
|||||||| ||||||||
Sbjct: 292 gtccaggaaaccatcga 308
>gb|BU825809.1|BU825809 UK113TD01 Populus apical shoot cDNA library Populus tremula x
Populus tremuloides cDNA 5 prime, mRNA sequence
Length = 552
Score = 113 bits (57), Expect = 9e-024
Identities = 165/201 (82%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 324 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 383
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||||| || ||
Sbjct: 384 agttttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacat 443
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || ||||||| |||||| ||||| |||||||||
Sbjct: 444 gtagggcctttcaatcttggaaatccaggtgaattcaccatgctcgagcttgctaaggtg 503
Query: 186 gtccaggacaccatcgaccca 206
|||||||| ||||| ||||||
Sbjct: 504 gtccaggaaaccattgaccca 524
>gb|DT476310.1|DT476310 WS01229.B21_B21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01229_B21 3', mRNA sequence
Length = 922
Score = 113 bits (57), Expect = 9e-024
Identities = 162/197 (82%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||| ||| |||| || ||||||||||| || |||||||||
Sbjct: 664 gttgctcaggcactgaggaaggaacctatgactgtttatggtgatgggaaacagactagg 605
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||||| || ||
Sbjct: 604 agttttcaatttgtttctgatttggttgagggcctgatgcgccttatggaaggagaacat 545
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || ||||||| |||||| ||||| ||| |||||
Sbjct: 544 gtagggcctttcaatcttgggaatccgggtgaattcaccatgcttgagcttgctcaggtg 485
Query: 186 gtccaggacaccatcga 202
|||||||| ||||||||
Sbjct: 484 gtccaggaaaccatcga 468
>gb|DT487290.1|DT487290 WS02533.B21_E19 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02533_E19 3', mRNA sequence
Length = 912
Score = 113 bits (57), Expect = 9e-024
Identities = 162/197 (82%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||| ||| |||| || ||||||||||| || |||||||||
Sbjct: 680 gttgctcaggcactgaggaaggaacctatgactgtttatggtgatgggaaacagactagg 621
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||||| || ||
Sbjct: 620 agttttcaatttgtttctgatttggttgagggcctgatgcgccttatggaaggagaacat 561
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || ||||||| |||||| ||||| ||| |||||
Sbjct: 560 gtagggcctttcaatcttgggaatccgggtgaattcaccatgcttgagcttgctcaggtg 501
Query: 186 gtccaggacaccatcga 202
|||||||| ||||||||
Sbjct: 500 gtccaggaaaccatcga 484
>gb|DT519855.1|DT519855 WS02443.B21_N22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02443_N22 3', mRNA sequence
Length = 905
Score = 113 bits (57), Expect = 9e-024
Identities = 162/197 (82%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||| ||| |||| || ||||||||||| || |||||||||
Sbjct: 868 gttgctcaggcactgaggaaggaacctatgactgtttatggtgatgggaaacagactagg 809
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||||| || ||
Sbjct: 808 agttttcaatttgtttctgatttggttgagggcctgatgcgccttatggaaggagaacat 749
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || ||||||| |||||| ||||| ||| |||||
Sbjct: 748 gtagggcctttcaatcttgggaatccgggtgaattcaccatgcttgagcttgctcaggtg 689
Query: 186 gtccaggacaccatcga 202
|||||||| ||||||||
Sbjct: 688 gtccaggaaaccatcga 672
>gb|BI129436.1|BI129436 G090P66Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 542
Score = 105 bits (53), Expect = 2e-021
Identities = 164/201 (81%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 16 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 75
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||||| || ||
Sbjct: 76 agttttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacat 135
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || |||| || |||||| ||||| |||||||||
Sbjct: 136 gtagggcctttcaatcttggaaatccaggtgaatgcaccatgctcgagcttgctaaggtg 195
Query: 186 gtccaggacaccatcgaccca 206
|||||||| ||||| ||||||
Sbjct: 196 gtccaggaaaccattgaccca 216
>gb|BI137782.1|BI137782 F093P42Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 432
Score = 105 bits (53), Expect = 2e-021
Identities = 161/197 (81%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| ||||||||||| ||| |||| || ||||||||||| || |||||||||
Sbjct: 86 gttgctcaggcactgaggaaggaacctatgactgtttatggtgatgggaaacagactagg 145
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| |||||| ||| || |||||||| || || |||||| || |||||||| || ||
Sbjct: 146 agtgttcaatttgtttctgatttggttgagggcctgatgcgccttatggaaggagaacat 205
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || ||||||| |||||| ||||| ||| |||||
Sbjct: 206 gtagggcctttcaatcttgggaatccgggtgaattcaccatgcttgagcttgctcaggtg 265
Query: 186 gtccaggacaccatcga 202
|||||||| ||||||||
Sbjct: 266 gtccaggaaaccatcga 282
>gb|CA928550.1|CA928550 MTU6TR.P4.A02 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 599
Score = 97.6 bits (49), Expect = 5e-019
Identities = 163/201 (81%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 226 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 285
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| || || |||||||| || || |||||| || |||||||| || ||
Sbjct: 286 agttttcaatttggttctgatttggttgagggtctgatgcgtcttatggaaggagaacat 345
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| || || ||||| || || || || || ||||||| |||||| ||||| |||||||||
Sbjct: 346 gtaggacctttcaatcttggaaatccaggtgaattcaccatgctcgagcttgctaaggtg 405
Query: 186 gtccaggacaccatcgaccca 206
|||||||| ||||| ||||||
Sbjct: 406 gtccaggaaaccattgaccca 426
>gb|CN550551.1|CN550551 GQ0242.B3_J13 GQ024 Populus trichocarpa x Populus deltoides cDNA
clone GQ0242_J13 5', mRNA sequence
Length = 709
Score = 97.6 bits (49), Expect = 5e-019
Identities = 163/201 (81%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 261 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 320
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||||| || ||
Sbjct: 321 agttttcaatttgtttctgatttggttgagggtctgatgcgtcttatggaaggagaacat 380
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || ||||||| |||||| ||||| || |||||
Sbjct: 381 gtagggcctttcaatcttggaaatccgggtgaattcaccatgctcgagcttgcccaggtg 440
Query: 186 gtccaggacaccatcgaccca 206
|||||||| ||||| ||||||
Sbjct: 441 gtccaggaaaccatagaccca 461
>gb|CV233669.1|CV233669 WS01211.B21_O21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01211_O21 3', mRNA sequence
Length = 704
Score = 97.6 bits (49), Expect = 5e-019
Identities = 163/201 (81%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 667 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 608
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||||| || ||
Sbjct: 607 agttttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacat 548
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || ||||||| |||||| ||||| || |||||
Sbjct: 547 gtagggcctttcaatcttggaaatccgggtgaattcaccatgctcgagcttgcccaggtg 488
Query: 186 gtccaggacaccatcgaccca 206
|||||||| ||||| ||||||
Sbjct: 487 gtccaggaaaccattgaccca 467
>gb|CV237262.1|CV237262 WS01227.B21.1_C10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01227_C10 3', mRNA sequence
Length = 895
Score = 97.6 bits (49), Expect = 5e-019
Identities = 163/201 (81%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 667 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 608
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||||| || ||
Sbjct: 607 agttttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacat 548
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || ||||||| |||||| ||||| || |||||
Sbjct: 547 gtagggcctttcaatcttggaaatccgggtgaattcaccatgctcgagcttgcccaggtg 488
Query: 186 gtccaggacaccatcgaccca 206
|||||||| ||||| ||||||
Sbjct: 487 gtccaggaaaccattgaccca 467
>gb|CV242276.1|CV242276 WS02514.B21.1_J24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02514_J24 3', mRNA sequence
Length = 856
Score = 97.6 bits (49), Expect = 5e-019
Identities = 163/201 (81%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 774 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 715
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||||| || ||
Sbjct: 714 agttttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacat 655
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || ||||||| |||||| ||||| || |||||
Sbjct: 654 gtagggcctttcaatcttggaaatccgggtgaattcaccatgctcgagcttgcccaggtg 595
Query: 186 gtccaggacaccatcgaccca 206
|||||||| ||||| ||||||
Sbjct: 594 gtccaggaaaccattgaccca 574
>gb|CV247664.1|CV247664 WS01118.B21_O19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01118_O19 3', mRNA sequence
Length = 700
Score = 97.6 bits (49), Expect = 5e-019
Identities = 163/201 (81%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 668 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 609
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||||| || ||
Sbjct: 608 agttttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacat 549
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || ||||||| |||||| ||||| || |||||
Sbjct: 548 gtagggcctttcaatcttggaaatccgggtgaattcaccatgctcgagcttgcccaggtg 489
Query: 186 gtccaggacaccatcgaccca 206
|||||||| ||||| ||||||
Sbjct: 488 gtccaggaaaccattgaccca 468
>gb|DT489199.1|DT489199 WS02538.B21_J01 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02538_J01 3', mRNA sequence
Length = 875
Score = 97.6 bits (49), Expect = 5e-019
Identities = 163/201 (81%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 669 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 610
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||||| || ||
Sbjct: 609 agttttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacat 550
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || ||||||| |||||| ||||| || |||||
Sbjct: 549 gtagggcctttcaatcttggaaatccgggtgaattcaccatgctcgagcttgcccaggtg 490
Query: 186 gtccaggacaccatcgaccca 206
|||||||| ||||| ||||||
Sbjct: 489 gtccaggaaaccattgaccca 469
>gb|DT494608.1|DT494608 WS01118.BR.1_O19 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01118_O19 5', mRNA sequence
Length = 723
Score = 97.6 bits (49), Expect = 5e-019
Identities = 163/201 (81%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 56 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 115
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||||| || ||
Sbjct: 116 agttttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacat 175
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || ||||||| |||||| ||||| || |||||
Sbjct: 176 gtagggcctttcaatcttggaaatccgggtgaattcaccatgctcgagcttgcccaggtg 235
Query: 186 gtccaggacaccatcgaccca 206
|||||||| ||||| ||||||
Sbjct: 236 gtccaggaaaccattgaccca 256
>gb|CX653431.1|CX653431 PO02001G11 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02001G11 5', mRNA sequence
Length = 454
Score = 91.7 bits (46), Expect = 3e-017
Identities = 157/194 (80%)
Strand = Plus / Plus
Query: 9 gctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagc 68
|||||||| ||||||||||| || |||| || ||||||||||| || |||||||||||
Sbjct: 11 gctcaggcactgaggaaggaacccatgactgtttatggtgatgggaaacagactaggagt 70
Query: 69 tttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcacatt 128
||||||| ||| || ||| |||| || || |||||| || |||||||| || || |
Sbjct: 71 tttcaatttgtttctgatctggttgagggcctgatgcgccttatggaaggagaacatgta 130
Query: 129 gggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtc 188
||||| ||||| || || || || || ||||||| |||||| ||||| ||| ||||||||
Sbjct: 131 gggcctttcaatcttgggaatccaggtgaattcaccatgcttgagcttgctcaggtggtc 190
Query: 189 caggacaccatcga 202
||||| ||||||||
Sbjct: 191 caggaaaccatcga 204
>gb|CA928802.1|CA928802 MTU6TR.P7.A07 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 599
Score = 89.7 bits (45), Expect = 1e-016
Identities = 162/201 (80%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||| ||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 226 gttgctcgggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 285
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||| | || ||
Sbjct: 286 agttttcaatttgtttctgatttggttgagggtctgatgcgtcttatggaatgagaacat 345
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
||||| ||||| || || || || || ||||||| |||||| ||||| |||||||||
Sbjct: 346 gcagggcctttcaatcttggaaatccaggtgaattcaccatgctcgagcttgctaaggtg 405
Query: 186 gtccaggacaccatcgaccca 206
|||||||| ||||| ||||||
Sbjct: 406 gtccaggaaaccattgaccca 426
>gb|CV247264.1|CV247264 WS01117.B21_J07 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01117_J07 3', mRNA sequence
Length = 902
Score = 89.7 bits (45), Expect = 1e-016
Identities = 162/201 (80%)
Strand = Plus / Minus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 730 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 671
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| ||||||| ||| || |||||||| || || |||||| || |||||||| || |
Sbjct: 670 agttttcaatttgtttctgatttggttgagggtctgatgcgccttatggaaggagaacgt 611
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| ||||| ||||| || || || || || ||||||| |||||| ||||| || |||||
Sbjct: 610 gtagggcctttcaatcttggaaatccgggtgaattcaccatgctcgagcttgcccaggtg 551
Query: 186 gtccaggacaccatcgaccca 206
|||||||| ||||| ||||||
Sbjct: 550 gtccaggaaaccattgaccca 530
>gb|CN522526.1|CN522526 GQ0121.B3_F24 GQ012 Populus trichocarpa x Populus deltoides cDNA
clone GQ0121_F24 5', mRNA sequence
Length = 467
Score = 83.8 bits (42), Expect = 8e-015
Identities = 150/186 (80%)
Strand = Plus / Plus
Query: 21 aggaaggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtc 80
|||||||||||| |||| || ||||||||||| || ||||| ||||| ||||||| |||
Sbjct: 2 aggaaggagcctatgactgtttatggtgatgggaaacagacaaggagttttcaatttgtt 61
Query: 81 tcagatttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaac 140
|| |||||||| || || |||||| || |||||||| || || | ||||| |||||
Sbjct: 62 tctgatttggttgagggtctgatgcgccttatggaaggagaacatgtagggcctttcaat 121
Query: 141 ctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatc 200
|| || || || || ||||||| |||||| ||||| || ||||||||||||| |||||
Sbjct: 122 cttggaaatccaggtgaattcaccatgctcgagcttgcccaggtggtccaggaaaccatt 181
Query: 201 gaccca 206
||||||
Sbjct: 182 gaccca 187
>gb|BU834862.1|BU834862 T066F04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 532
Score = 81.8 bits (41), Expect = 3e-014
Identities = 150/185 (81%), Gaps = 1/185 (0%)
Strand = Plus / Plus
Query: 22 ggaaggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtct 81
||||||||||| |||| || ||||||||||| || | ||| ||||| ||||||| ||| |
Sbjct: 1 ggaaggagcctatgactgtttatggtgatgggaaac-gacaaggagttttcaatttgttt 59
Query: 82 cagatttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacc 141
| |||||||| || || |||||| || |||||||| || || | ||||| ||||| |
Sbjct: 60 ctgatttggttgagggtctgatgcgccttatggaaggagaacatgtagggcctttcaatc 119
Query: 142 tcggcaaccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcg 201
| || || || || ||||||| |||||| ||||| ||||||||||||||||| ||||| |
Sbjct: 120 ttggaaatccaggtgaattcaccatgctcgagcttgctaaggtggtccaggaaaccattg 179
Query: 202 accca 206
|||||
Sbjct: 180 accca 184
>gb|CK098211.1|CK098211 A007P62.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A007P62 5', mRNA sequence
Length = 385
Score = 77.8 bits (39), Expect = 5e-013
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 215 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 274
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatg 104
|| ||||||| ||| || |||||||| || || ||||||
Sbjct: 275 agttttcaatttgtttctgatttggttgagggtctgatg 313
>gb|BI119774.1|BI119774 F005P05Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 302
Score = 75.8 bits (38), Expect = 2e-012
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 212 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 271
Query: 66 agctttcaatatgtctcagatttggt 91
|| ||||||| ||| || ||||||||
Sbjct: 272 agttttcaatttgtttctgatttggt 297
>gb|BI130663.1|BI130663 G108P95Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 455
Score = 65.9 bits (33), Expect = 2e-009
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 342 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgggaaacagacaagg 401
Query: 66 agctttcaa 74
|| ||||||
Sbjct: 402 agttttcaa 410
>gb|CF232400.1|CF232400 PtaJXO0010A5H0816 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 665
Score = 61.9 bits (31), Expect = 3e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 156 gaattcagcatgctggagctggctaaggtggtccaggacaccatcgaccca 206
||||||| |||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 31 gaattcaccatgctcgagcttgctaaggtggtccaggaaaccattgaccca 81
>gb|BI129897.1|BI129897 G097P09Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 363
Score = 54.0 bits (27), Expect = 7e-006
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 164 catgctggagctggctaaggtggtccaggacaccatcgaccca 206
|||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 96 catgctcgagcttgctaaggtggtccaggaaaccattgaccca 138
>gb|BI135440.1|BI135440 F051P45Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 257
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatgg 52
||||||||||| || |||||||||||| |||| || |||||||||||
Sbjct: 211 gttgctcaggcactaaggaaggagcctatgactgtttatggtgatgg 257
>gb|CV251224.1|CV251224 WS0116.B21_E05 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS0116_E05 3', mRNA sequence
Length = 611
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 156 gaattcagcatgctggagctggctaaggtggtccaggacaccatcga 202
||||||| |||||| ||||| ||| ||||||||||||| ||||||||
Sbjct: 539 gaattcaccatgcttgagcttgctcaggtggtccaggaaaccatcga 493
>gb|DT492733.1|DT492733 WS02552.C21_C13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02552_C13 3', mRNA sequence
Length = 599
Score = 54.0 bits (27), Expect = 7e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 156 gaattcagcatgctggagctggctaaggtggtccaggacaccatcga 202
||||||| |||||| ||||| ||| ||||||||||||| ||||||||
Sbjct: 527 gaattcaccatgcttgagcttgctcaggtggtccaggaaaccatcga 481
>gb|AI161839.1|AI161839 A007P62U Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 531
Score = 52.0 bits (26), Expect = 3e-005
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||| || |||||||||||| |||| || ||||||||||| || ||||| |||
Sbjct: 168 gttgctcaggcactaaggaaggagcctatgactgt-tatggtgatgggaaacagacaagg 226
Query: 66 ag 67
||
Sbjct: 227 ag 228
>gb|BU884377.1|BU884377 R009G11 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 614
Score = 52.0 bits (26), Expect = 3e-005
Identities = 107/134 (79%)
Strand = Plus / Plus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgtctcagatttggtggaagggctg 101
||||| ||||| || || ||||||||||| |||||||| || || |||| || ||||||
Sbjct: 37 tatggggatgggaaacaaactaggagcttccaatatgtttctgacctggttgatgggctg 96
Query: 102 atgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaattc 161
|| || |||||||| |||||| | || || |||||||| |||||||| ||||| |||
Sbjct: 97 gtggctctaatggaaggcgagcacgtgggacctttcaaccttggcaacccaggagagttc 156
Query: 162 agcatgctggagct 175
| ||||| |||||
Sbjct: 157 actatgctcgagct 170
>gb|CK091807.1|CK091807 F127P19.3pR Populus flower cDNA library Populus trichocarpa cDNA
clone F127P19 3', mRNA sequence
Length = 844
Score = 52.0 bits (26), Expect = 3e-005
Identities = 107/134 (79%)
Strand = Plus / Minus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgtctcagatttggtggaagggctg 101
||||| ||||| || || ||||||||||| |||||||| || || |||| || ||||||
Sbjct: 549 tatggggatgggaaacaaactaggagcttccaatatgtttctgacctggttgatgggctg 490
Query: 102 atgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaattc 161
|| || |||||||| |||||| | || || |||||||| |||||||| ||||| |||
Sbjct: 489 gtggctctaatggaaggcgagcacgtgggacctttcaaccttggcaacccaggagagttc 430
Query: 162 agcatgctggagct 175
| ||||| |||||
Sbjct: 429 actatgctcgagct 416
>gb|CV234257.1|CV234257 WS01214.B21_D24 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01214_D24 3', mRNA sequence
Length = 737
Score = 52.0 bits (26), Expect = 3e-005
Identities = 107/134 (79%)
Strand = Plus / Minus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgtctcagatttggtggaagggctg 101
||||| ||||| || || ||||||||||| |||||||| || || |||| || ||||||
Sbjct: 737 tatggggatgggaaacaaactaggagcttccaatatgtttctgacctggttgatgggctg 678
Query: 102 atgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaattc 161
|| || |||||||| |||||| | || || |||||||| |||||||| ||||| |||
Sbjct: 677 gtggctctaatggaaggcgagcacgtgggacctttcaaccttggcaacccaggagagttc 618
Query: 162 agcatgctggagct 175
| ||||| |||||
Sbjct: 617 actatgctcgagct 604
>gb|CV236293.1|CV236293 WS01223.B21_J13 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01223_J13 3', mRNA sequence
Length = 867
Score = 52.0 bits (26), Expect = 3e-005
Identities = 107/134 (79%)
Strand = Plus / Minus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgtctcagatttggtggaagggctg 101
||||| ||||| || || ||||||||||| |||||||| || || |||| || ||||||
Sbjct: 737 tatggggatgggaaacaaactaggagcttccaatatgtttctgacctggttgatgggctg 678
Query: 102 atgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaattc 161
|| || |||||||| |||||| | || || |||||||| |||||||| ||||| |||
Sbjct: 677 gtggctctaatggaaggcgagcacgtgggacctttcaaccttggcaacccaggagagttc 618
Query: 162 agcatgctggagct 175
| ||||| |||||
Sbjct: 617 actatgctcgagct 604
>gb|DT499631.1|DT499631 WS0118.BR_N17 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS0118_N17
5', mRNA sequence
Length = 565
Score = 50.1 bits (25), Expect = 1e-004
Identities = 97/121 (80%)
Strand = Plus / Plus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgtctcagatttggtggaagggctg 101
||||| ||||| || || ||||||||||| |||||||| || || |||| || ||||||
Sbjct: 115 tatggggatgggaaacaaactaggagcttccaatatgtttctgacctggttgatgggctg 174
Query: 102 atgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaattc 161
|| || |||||||| |||||| | || || |||||||| |||||||| ||||| |||
Sbjct: 175 gtggctctaatggaaggcgagcacgtgggacctttcaaccttggcaacccaggagagttc 234
Query: 162 a 162
|
Sbjct: 235 a 235
>gb|CV277427.1|CV277427 WS0143.B21_I24 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0143_I24 3', mRNA sequence
Length = 503
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 156 gaattcagcatgctggagctggctaaggtggtccaggacaccat 199
||||||| |||||| ||||| ||| ||||||||||||| |||||
Sbjct: 482 gaattcaccatgcttgagcttgctcaggtggtccaggaaaccat 439
>gb|CV230060.1|CV230060 WS01915.B21_E22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01915_E22 3', mRNA sequence
Length = 609
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 156 gaattcagcatgctggagctggctaaggtggtccaggacaccatcgaccca 206
||||||| |||||| ||||| || ||||||||||||| ||||| ||||||
Sbjct: 570 gaattcaccatgctcgagcttgcccaggtggtccaggaaaccattgaccca 520
>gb|CV241062.1|CV241062 WS02511.B21_B22 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02511_B22 3', mRNA sequence
Length = 521
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 156 gaattcagcatgctggagctggctaaggtggtccaggacaccatcgaccca 206
||||||| |||||| ||||| || ||||||||||||| ||||| ||||||
Sbjct: 518 gaattcaccatgctcgagcttgcccaggtggtccaggaaaccattgaccca 468
>gb|CV246813.1|CV246813 WS01116.B21_A16 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01116_A16 3', mRNA sequence
Length = 706
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 156 gaattcagcatgctggagctggctaaggtggtccaggacaccatcgaccca 206
||||||| |||||| ||||| || ||||||||||||| ||||| ||||||
Sbjct: 580 gaattcaccatgctcgagcttgcccaggtggtccaggaaaccattgaccca 530
>gb|DT469792.1|DT469792 WS01918.C21_O11 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01918_O11 3', mRNA sequence
Length = 557
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 156 gaattcagcatgctggagctggctaaggtggtccaggacaccatcgaccca 206
||||||| |||||| ||||| || ||||||||||||| ||||| ||||||
Sbjct: 541 gaattcaccatgctcgagcttgcccaggtggtccaggaaaccattgaccca 491
>gb|DN493626.1|DN493626 G073P36.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G073P36 5', mRNA sequence
Length = 757
Score = 44.1 bits (22), Expect = 0.007
Identities = 106/134 (79%)
Strand = Plus / Plus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgtctcagatttggtggaagggctg 101
||||| ||||| || || ||||||||||| |||||||| || || |||| || ||||||
Sbjct: 192 tatggggatgggaaacaaactaggagcttccaatatgtttctgacctggttgatgggctg 251
Query: 102 atgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaattc 161
|| || |||||||| |||||| | || || |||||| | |||||||| ||||| |||
Sbjct: 252 gtggctctaatggaaggcgagcacgtgggacctttcaacgttggcaacccaggagagttc 311
Query: 162 agcatgctggagct 175
| ||||| |||||
Sbjct: 312 actatgctcgagct 325
>gb|DT523430.1|DT523430 WS02039.B21_K21 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02039_K21 3', mRNA sequence
Length = 890
Score = 44.1 bits (22), Expect = 0.007
Identities = 106/134 (79%)
Strand = Plus / Minus
Query: 42 tatggtgatggcaagcagactaggagctttcaatatgtctcagatttggtggaagggctg 101
||||| ||||| || || ||||||||||| |||||||| || || |||| || ||||||
Sbjct: 640 tatggggatgggaaacaaactaggagcttccaatatgtttctgacctggttgatgggctg 581
Query: 102 atgaagctcatggaaggggagcacattgggccgttcaacctcggcaaccctggagaattc 161
|| || |||||||| ||||| | || || |||||||| |||||||| ||||| |||
Sbjct: 580 gtggctctaatggaaggcgagcatgtgggacctttcaaccttggcaacccaggagagttc 521
Query: 162 agcatgctggagct 175
| ||||| |||||
Sbjct: 520 actatgcttgagct 507
>gb|CV238302.1|CV238302 WS0126.B21_B10 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0126_B10 3', mRNA sequence
Length = 605
Score = 38.2 bits (19), Expect = 0.40
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 172 agctggctaaggtggtccaggacaccatcga 202
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Sbjct: 605 agcttgctcaggtggtccaggaaaccatcga 575
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,557
Number of Sequences: 369679
Number of extensions: 53557
Number of successful extensions: 13770
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 13699
Number of HSP's gapped (non-prelim): 59
length of query: 651
length of database: 203,408,664
effective HSP length: 19
effective length of query: 632
effective length of database: 196,384,763
effective search space: 124115170216
effective search space used: 124115170216
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)