BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3438088.2.1
(615 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU821516.1|BU821516 UB24CPB10 Populus tremula cambium cD... 60 1e-007
gb|CA927392.1|CA927392 MTU6CR.P8.D11 Aspen root cDNA Librar... 60 1e-007
gb|CN517736.1|CN517736 GQ0094.B3_L07 GQ009 Populus trichoca... 60 1e-007
gb|CN519498.1|CN519498 GQ0102.B3_O10 GQ010 Populus trichoca... 60 1e-007
gb|CV259544.1|CV259544 WS02011.B21_K06 PTxN-IB-N-A-11 Popul... 60 1e-007
gb|CV261013.1|CV261013 WS02015.B21_J20 PTxN-IB-N-A-11 Popul... 60 1e-007
gb|CV262163.1|CV262163 WS02018.B21_M22 PTxN-IB-N-A-11 Popul... 60 1e-007
gb|CV265325.1|CV265325 WS02026.B21_P03 PTxN-IB-N-A-11 Popul... 60 1e-007
gb|CV266155.1|CV266155 WS02029.B21_E02 PTxN-IB-N-A-11 Popul... 60 1e-007
gb|CV268317.1|CV268317 WS0205.B21_C09 PTxN-IB-N-A-11 Populu... 60 1e-007
gb|CV270355.1|CV270355 WS0151.B21_M11 PTxN-IB-A-6 Populus t... 60 1e-007
gb|CV271294.1|CV271294 WS0154.B21_E23 PTxN-IB-A-6 Populus t... 60 1e-007
gb|CV271368.1|CV271368 WS0154.B21_I07 PTxN-IB-A-6 Populus t... 60 1e-007
gb|DT507184.1|DT507184 WS02417.BR_J07 PTxD-ICC-N-A-14 Popul... 60 1e-007
gb|DT511836.1|DT511836 WS02417.B21_J07 PTxD-ICC-N-A-14 Popu... 60 1e-007
gb|DT522442.1|DT522442 WS02036.B21_P20 PTxN-IB-N-A-11 Popul... 60 1e-007
gb|BI127931.1|BI127931 G068P36Y Populus cambium cDNA librar... 52 3e-005
gb|BI128418.1|BI128418 G075P56Y Populus cambium cDNA librar... 52 3e-005
gb|BI128462.1|BI128462 G076P64Y Populus cambium cDNA librar... 52 3e-005
gb|BI130837.1|BI130837 G111P47Y Populus cambium cDNA librar... 52 3e-005
gb|BI131914.1|BI131914 G127P54Y Populus cambium cDNA librar... 52 3e-005
gb|BU888804.1|BU888804 P012G04 Populus petioles cDNA librar... 52 3e-005
gb|BU896200.1|BU896200 X037B03 Populus wood cDNA library Po... 52 3e-005
gb|BU897803.1|BU897803 X069H06 Populus wood cDNA library Po... 52 3e-005
gb|CF232330.1|CF232330 PtaJXO0009B6B0604 Poplar cDNA librar... 52 3e-005
gb|CF235915.1|CF235915 PtaJXT0028E1E0109 Poplar cDNA librar... 52 3e-005
gb|AJ775074.1|AJ775074 AJ775074 Populus euphratica shoot 3-... 52 3e-005
gb|CV130556.1|CV130556 B9SP04b08 Populus stem seasonal libr... 52 3e-005
gb|CV225810.1|CV225810 WS0162.B21_H10 PT-DX-A-7 Populus tri... 52 3e-005
gb|CV227881.1|CV227881 WS0168.B21_H18 PT-DX-A-7 Populus tri... 52 3e-005
gb|CV228003.1|CV228003 WS0168.B21_N05 PT-DX-A-7 Populus tri... 52 3e-005
gb|CV230596.1|CV230596 WS0192.B21_A18 PT-DX-N-A-10 Populus ... 52 3e-005
gb|CV231842.1|CV231842 WS0195.B21_L17 PT-DX-N-A-10 Populus ... 52 3e-005
gb|CX175703.1|CX175703 C06_69-40_06.ab1 leaf inoculated wit... 52 3e-005
gb|DN496569.1|DN496569 P078B11.5pR Populus petioles cDNA li... 52 3e-005
gb|DT470270.1|DT470270 WS01920.C21_F21 PT-DX-N-A-10 Populus... 52 3e-005
gb|AY535003.1| Populus tremuloides endo-1,4-beta-glucanase ... 52 3e-005
gb|AY660967.1| Populus tremula x Populus tremuloides Cel9A ... 52 3e-005
gb|BU869339.1|BU869339 M128H12 Populus flower cDNA library ... 50 1e-004
gb|BU862701.1|BU862701 S019A04 Populus imbibed seed cDNA li... 48 4e-004
gb|AI164537.1|AI164537 A064p06u Hybrid aspen plasmid librar... 46 0.002
gb|CF235295.1|CF235295 PtaJXT0021B2B0204 Poplar cDNA librar... 46 0.002
gb|CK108087.1|CK108087 G092P84 Populus tension wood cDNA li... 46 0.002
gb|BI068546.1|BI068546 C023P52U Populus strain T89 leaves P... 44 0.006
gb|BI127495.1|BI127495 G061P45Y Populus cambium cDNA librar... 44 0.006
gb|BU894139.1|BU894139 X003D08 Populus wood cDNA library Po... 44 0.006
gb|BU896354.1|BU896354 X039E02 Populus wood cDNA library Po... 44 0.006
gb|CF232390.1|CF232390 PtaJXO0009H4H0416 Poplar cDNA librar... 44 0.006
gb|CF234792.1|CF234792 PtaJXT0015B9B0903 Poplar cDNA librar... 44 0.006
gb|CX655533.1|CX655533 PO02036B01 Poplar SC cDNA library Po... 44 0.006
gb|CX655551.1|CX655551 PO02036D04 Poplar SC cDNA library Po... 44 0.006
gb|DN486974.1|DN486974 P078B11.3pR Populus petioles cDNA li... 44 0.006
gb|DT479448.1|DT479448 WS02525.BR_O15 PT-MB-N-A-15 Populus ... 44 0.006
gb|DT484615.1|DT484615 WS02525.B21_O15 PT-MB-N-A-15 Populus... 44 0.006
gb|DT509292.1|DT509292 WS02423.BR_F08 PTxD-ICC-N-A-14 Popul... 42 0.024
gb|DT513904.1|DT513904 WS02423.B21_F08 PTxD-ICC-N-A-14 Popu... 42 0.024
gb|CV240415.1|CV240415 WS0251.B21_F03 PT-MB-N-A-15 Populus ... 40 0.097
gb|DT477938.1|DT477938 WS02521.BR_G13 PT-MB-N-A-15 Populus ... 40 0.097
gb|DT480115.1|DT480115 WS02527.BR_P13 PT-MB-N-A-15 Populus ... 40 0.097
gb|BI130184.1|BI130184 G101P51Y Populus cambium cDNA librar... 38 0.38
gb|CA823644.1|CA823644 R29C09 two-month-old roots from clon... 38 0.38
gb|CV259062.1|CV259062 WS02010.B21_E06 PTxN-IB-N-A-11 Popul... 38 0.38
gb|CV261717.1|CV261717 WS02017.B21_I22 PTxN-IB-N-A-11 Popul... 38 0.38
gb|DV466460.1|DV466460 MTUNUL1.P50.H08 NUL Populus fremonti... 38 0.38
>gb|BU821516.1|BU821516 UB24CPB10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 449
Score = 60.0 bits (30), Expect = 1e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| ||| | | ||||| |||||||||||| || |||||||||
Sbjct: 446 gggccagcaaccatggctcctacaagtgtatttgggtttggcttcgaggtgtccctccat 387
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 386 ttccatcctccttt 373
>gb|CA927392.1|CA927392 MTU6CR.P8.D11 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 690
Score = 60.0 bits (30), Expect = 1e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| ||||||||||||
Sbjct: 254 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggcgtccctccat 195
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 194 ttccatcctccttt 181
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 404 actgcagagaatatggtgttcttgtc 379
>gb|CN517736.1|CN517736 GQ0094.B3_L07 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0094_L07 5', mRNA sequence
Length = 373
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| |||||||||||| |
Sbjct: 168 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgag 109
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 108 gtgtccctccatttccatcctccttt 83
>gb|CN519498.1|CN519498 GQ0102.B3_O10 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0102_O10 5', mRNA sequence
Length = 593
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| |||||||||||| |
Sbjct: 289 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgag 230
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 229 gtgtccctccatttccatcctccttt 204
>gb|CV259544.1|CV259544 WS02011.B21_K06 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02011_K06 3', mRNA sequence
Length = 711
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| |||||||||||| |
Sbjct: 556 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgag 615
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 616 gtgtccctccatttccatcctccttt 641
>gb|CV261013.1|CV261013 WS02015.B21_J20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02015_J20 3', mRNA sequence
Length = 843
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| |||||||||||| |
Sbjct: 557 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgag 616
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 617 gtgtccctccatttccatcctccttt 642
>gb|CV262163.1|CV262163 WS02018.B21_M22 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02018_M22 3', mRNA sequence
Length = 925
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| |||||||||||| |
Sbjct: 558 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgag 617
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 618 gtgtccctccatttccatcctccttt 643
>gb|CV265325.1|CV265325 WS02026.B21_P03 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02026_P03 3', mRNA sequence
Length = 835
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| |||||||||||| |
Sbjct: 584 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgag 643
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 644 gtgtccctccatttccatcctccttt 669
>gb|CV266155.1|CV266155 WS02029.B21_E02 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02029_E02 3', mRNA sequence
Length = 807
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| |||||||||||| |
Sbjct: 504 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgag 445
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 444 gtgtccctccatttccatcctccttt 419
>gb|CV268317.1|CV268317 WS0205.B21_C09 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0205_C09 3', mRNA sequence
Length = 740
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| |||||||||||| |
Sbjct: 558 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgag 617
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 618 gtgtccctccatttccatcctccttt 643
>gb|CV270355.1|CV270355 WS0151.B21_M11 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0151_M11 3', mRNA sequence
Length = 844
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| |||||||||||| |
Sbjct: 558 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgag 617
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 618 gtgtccctccatttccatcctccttt 643
>gb|CV271294.1|CV271294 WS0154.B21_E23 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0154_E23 3', mRNA sequence
Length = 833
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| |||||||||||| |
Sbjct: 191 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgag 132
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 131 gtgtccctccatttccatcctccttt 106
>gb|CV271368.1|CV271368 WS0154.B21_I07 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0154_I07 3', mRNA sequence
Length = 844
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| |||||||||||| |
Sbjct: 558 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgag 617
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 618 gtgtccctccatttccatcctccttt 643
>gb|DT507184.1|DT507184 WS02417.BR_J07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_J07 5', mRNA sequence
Length = 822
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| |||||||||||| |
Sbjct: 373 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgag 314
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 313 gtgtccctccatttccatcctccttt 288
>gb|DT511836.1|DT511836 WS02417.B21_J07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02417_J07 3', mRNA sequence
Length = 773
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| |||||||||||| |
Sbjct: 558 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgag 617
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 618 gtgtccctccatttccatcctccttt 643
>gb|DT522442.1|DT522442 WS02036.B21_P20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02036_P20 3', mRNA sequence
Length = 844
Score = 60.0 bits (30), Expect = 1e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| |||||||||||| |
Sbjct: 558 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgag 617
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 618 gtgtccctccatttccatcctccttt 643
>gb|BI127931.1|BI127931 G068P36Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 478
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct: 388 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccat 329
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 328 ttccatcctccttt 315
>gb|BI128418.1|BI128418 G075P56Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 539
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct: 461 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccat 402
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 401 ttccatcctccttt 388
>gb|BI128462.1|BI128462 G076P64Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 513
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct: 358 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccat 299
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 298 ttccatcctccttt 285
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 508 actgcagagaatatggtgttcttgtc 483
>gb|BI130837.1|BI130837 G111P47Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 492
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct: 417 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccat 358
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 357 ttccatcctccttt 344
>gb|BI131914.1|BI131914 G127P54Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 382
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct: 278 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccat 219
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 218 ttccatcctccttt 205
>gb|BU888804.1|BU888804 P012G04 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 691
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct: 145 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccat 86
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 85 ttccatcctccttt 72
>gb|BU896200.1|BU896200 X037B03 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 703
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct: 217 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccat 158
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 157 ttccatcctccttt 144
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 367 actgcagagaatatggtgttcttgtc 342
>gb|BU897803.1|BU897803 X069H06 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 747
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct: 357 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccat 298
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 297 ttccatcctccttt 284
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 507 actgcagagaatatggtgttcttgtc 482
>gb|CF232330.1|CF232330 PtaJXO0009B6B0604 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 734
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct: 191 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccat 132
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 131 ttccatcctccttt 118
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 341 actgcagagaatatggtgttcttgtc 316
>gb|CF235915.1|CF235915 PtaJXT0028E1E0109 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 732
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct: 211 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccat 152
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 151 ttccatcctccttt 138
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 361 actgcagagaatatggtgttcttgtc 336
>gb|AJ775074.1|AJ775074 AJ775074 Populus euphratica shoot 3-6 months Populus euphratica
cDNA clone P0000300027E06F1, mRNA sequence
Length = 614
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct: 117 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccat 58
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 57 ttccatcctccttt 44
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 267 actgcagagaatatggtgttcttgtc 242
>gb|CV130556.1|CV130556 B9SP04b08 Populus stem seasonal library Populus deltoides cDNA,
mRNA sequence
Length = 860
Score = 52.0 bits (26), Expect = 3e-005
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||| ||||||||||| || | | ||||| |||||||||||| |
Sbjct: 526 tcatgccggtcagggcccgcaaccatggctccaacaagtgtatttgggtttggcttcgag 467
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 466 gtgtccctccatttccatcctccttt 441
>gb|CV225810.1|CV225810 WS0162.B21_H10 PT-DX-A-7 Populus trichocarpa cDNA clone WS0162_H10
3', mRNA sequence
Length = 752
Score = 52.0 bits (26), Expect = 3e-005
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| ||||| |||||| |
Sbjct: 557 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggttcggcttcgag 616
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 617 gtgtccctccatttccatcctccttt 642
>gb|CV227881.1|CV227881 WS0168.B21_H18 PT-DX-A-7 Populus trichocarpa cDNA clone WS0168_H18
3', mRNA sequence
Length = 722
Score = 52.0 bits (26), Expect = 3e-005
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||| ||||||||||| || | | ||||| |||||||||||| |
Sbjct: 557 tcatgccggtcagggcccgcaaccatggctccaacaagtgtatttgggtttggcttcgag 616
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 617 gtgtccctccatttccatcctccttt 642
>gb|CV228003.1|CV228003 WS0168.B21_N05 PT-DX-A-7 Populus trichocarpa cDNA clone WS0168_N05
3', mRNA sequence
Length = 873
Score = 52.0 bits (26), Expect = 3e-005
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||| ||||||||||| || | | ||||| |||||||||||| |
Sbjct: 590 tcatgccggtcagggcccgcaaccatggctccaacaagtgtatttgggtttggcttcgag 649
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 650 gtgtccctccatttccatcctccttt 675
>gb|CV230596.1|CV230596 WS0192.B21_A18 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0192_A18 3', mRNA sequence
Length = 849
Score = 52.0 bits (26), Expect = 3e-005
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||| ||||||||||| || | | ||||| |||||||||||| |
Sbjct: 335 tcatgccggtcagggcccgcaaccatggctccaacaagtgtatttgggtttggcttcgag 276
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 275 gtgtccctccatttccatcctccttt 250
>gb|CV231842.1|CV231842 WS0195.B21_L17 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0195_L17 3', mRNA sequence
Length = 685
Score = 52.0 bits (26), Expect = 3e-005
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||| ||||||||||| || | | ||||| |||||||||||| |
Sbjct: 555 tcatgccggtcagggcccgcaaccatggctccaacaagtgtatttgggtttggcttcaag 614
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 615 gtgtccctccatttccatcctccttt 640
>gb|CX175703.1|CX175703 C06_69-40_06.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 679
Score = 52.0 bits (26), Expect = 3e-005
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||| ||||||||||| || | | ||||| |||||||||||| |
Sbjct: 627 tcatgccggtcagggcccgcaaccatggctccaacaagtgtatttgggtttggcttcgag 568
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 567 gtgtccctccatttccatcctccttt 542
>gb|DN496569.1|DN496569 P078B11.5pR Populus petioles cDNA library Populus tremula cDNA
clone P078B11 5', mRNA sequence
Length = 830
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct: 457 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccat 398
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 397 ttccatcctccttt 384
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 607 actgcagagaatatggtgttcttgtc 582
>gb|DT470270.1|DT470270 WS01920.C21_F21 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01920_F21 3', mRNA sequence
Length = 783
Score = 52.0 bits (26), Expect = 3e-005
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||| ||||||||||| || | | ||||| |||||||||||| |
Sbjct: 554 tcatgccggtcagggcccgcaaccatggctccaacaagtgtatttgggtttggcttcgag 613
Query: 483 gcgtccctccacttccaccctccttt 508
| ||||||||| ||||| ||||||||
Sbjct: 614 gtgtccctccatttccatcctccttt 639
>gb|AY535003.1| Populus tremuloides endo-1,4-beta-glucanase (Kor1) mRNA, complete cds
Length = 2562
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct: 1920 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccat 1861
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 1860 ttccatcctccttt 1847
Score = 38.2 bits (19), Expect = 0.38
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 288 gcagagaacatggtgttcttgtc 310
|||||||| ||||||||||||||
Sbjct: 2067 gcagagaatatggtgttcttgtc 2045
>gb|AY660967.1| Populus tremula x Populus tremuloides Cel9A mRNA, complete cds
Length = 1860
Score = 52.0 bits (26), Expect = 3e-005
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct: 1658 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccat 1599
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 1598 ttccatcctccttt 1585
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 1808 actgcagagaatatggtgttcttgtc 1783
>gb|BU869339.1|BU869339 M128H12 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 608
Score = 50.1 bits (25), Expect = 1e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 423 tcatggcggtcggggccagcaaccatggcacctgctatggtattagggtttggcttcttg 482
||||| ||||| ||||||||||||||||| || | | ||||| |||||||||||| |
Sbjct: 79 tcatgccggtcagggccagcaaccatggctccaacaagtgtatttgggtttggcttcgag 20
Query: 483 gcgtccctccacttcca 499
| ||||||||| |||||
Sbjct: 19 gtgtccctccatttcca 3
>gb|BU862701.1|BU862701 S019A04 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 680
Score = 48.1 bits (24), Expect = 4e-004
Identities = 93/116 (80%)
Strand = Plus / Minus
Query: 393 ttgtagttcctgcgggcatctttgaacccgtcatggcggtcggggccagcaaccatggca 452
|||||||| ||||| |||| | ||| || ||||| | ||| || ||||||||||||||
Sbjct: 212 ttgtagttggtgcggacatcatggaaaccatcatgcctgtcaggaccagcaaccatggct 153
Query: 453 cctgctatggtattagggtttggcttcttggcgtccctccacttccaccctccttt 508
|| | | ||||| || ||||||||| ||| ||||||||| ||||| ||||||||
Sbjct: 152 ccaacaagtgtatttggatttggcttcgtggtgtccctccatttccatcctccttt 97
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 320 actgcagagaatatggtgttcttgtc 295
>gb|AI164537.1|AI164537 A064p06u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 399
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 462 gtattagggtttggcttcttggcgtccctccacttccaccctccttt 508
||||| |||||||||||| || ||||||||| ||||| ||||||||
Sbjct: 229 gtatttgggtttggcttcgaggtgtccctccatttccatcctccttt 183
>gb|CF235295.1|CF235295 PtaJXT0021B2B0204 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 628
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 438 ccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccacttc 497
|||||||||||||| || | | ||||| || ||||||||| ||| ||||||||| |||
Sbjct: 191 ccagcaaccatggctccaacaagtgtatttggatttggcttcgtggtgtccctccatttc 132
Query: 498 caccctccttt 508
|| ||||||||
Sbjct: 131 catcctccttt 121
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 344 actgcagagaatatggtgttcttgtc 319
>gb|CK108087.1|CK108087 G092P84 Populus tension wood cDNA library Populus tremula x Populus
tremuloides cDNA clone G092P84 5', mRNA sequence
Length = 430
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 462 gtattagggtttggcttcttggcgtccctccacttccaccctccttt 508
||||| |||||||||||| || ||||||||| ||||| ||||||||
Sbjct: 99 gtatttgggtttggcttcgaggtgtccctccatttccatcctccttt 53
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 298 actgcagagaatatggtgttcttgtc 273
>gb|BI068546.1|BI068546 C023P52U Populus strain T89 leaves Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 387
Score = 44.1 bits (22), Expect = 0.006
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 462 gtattagggtttggcttcttggcgtccctccacttccaccctcctt 507
||||| |||||||||||| || ||||||||| ||||| |||||||
Sbjct: 245 gtatttgggtttggcttcgaggtgtccctccatttccatcctcctt 200
>gb|BI127495.1|BI127495 G061P45Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 493
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 87 actgcagagaatatggtgttcttgtc 62
>gb|BU894139.1|BU894139 X003D08 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 200
Score = 44.1 bits (22), Expect = 0.006
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | |||| |||||||||||| || |||||||||
Sbjct: 197 gggccagcaaccatggctccaacaagtgtatatgggtttggcttcgaggtgtccctccat 138
Query: 495 ttccaccctccttt 508
||||| ||||||||
Sbjct: 137 ttccatcctccttt 124
>gb|BU896354.1|BU896354 X039E02 Populus wood cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 595
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 195 actgcagagaatatggtgttcttgtc 170
>gb|CF232390.1|CF232390 PtaJXO0009H4H0416 Poplar cDNA library from young opposite xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 470
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 342 actgcagagaatatggtgttcttgtc 317
Score = 40.1 bits (20), Expect = 0.097
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 435 gggccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccac 494
||||||||||||||||| || | | ||||| |||||||||||| || |||||||||
Sbjct: 190 gggccagcaaccatggctccaacaagtgtatttgggtttggcttcgaggtgtccctccat 131
Query: 495 ttcc 498
||||
Sbjct: 130 ttcc 127
>gb|CF234792.1|CF234792 PtaJXT0015B9B0903 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 504
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 71 actgcagagaatatggtgttcttgtc 46
>gb|CX655533.1|CX655533 PO02036B01 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02036B01 5', mRNA sequence
Length = 627
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 285 actgcagagaacatggtgttcttgtc 310
||||||||||| ||||||||||||||
Sbjct: 202 actgcagagaatatggtgttcttgtc 177
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,630
Number of Sequences: 369679
Number of extensions: 70630
Number of successful extensions: 21784
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21575
Number of HSP's gapped (non-prelim): 162
length of query: 615
length of database: 203,408,664
effective HSP length: 19
effective length of query: 596
effective length of database: 196,384,763
effective search space: 117045318748
effective search space used: 117045318748
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)