BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 33531.2.1
(724 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU809367.1|BU809367 UL56PH10 Populus leaf cDNA library P... 38 0.45
gb|BU812281.1|BU812281 UL94TD06 Populus leaf cDNA library P... 38 0.45
gb|BU816435.1|BU816435 N064F10 Populus bark cDNA library Po... 38 0.45
gb|BU821826.1|BU821826 UB28CPF08 Populus tremula cambium cD... 38 0.45
gb|BU871051.1|BU871051 Q026C10 Populus flower cDNA library ... 38 0.45
gb|BU879891.1|BU879891 UM38TG11 Populus flower cDNA library... 38 0.45
gb|BU880669.1|BU880669 UM53TB09 Populus flower cDNA library... 38 0.45
gb|BU885266.1|BU885266 R028G03 Populus root cDNA library Po... 38 0.45
gb|BU888723.1|BU888723 P011F07 Populus petioles cDNA librar... 38 0.45
gb|BU891922.1|BU891922 P057B06 Populus petioles cDNA librar... 38 0.45
gb|BU893957.1|BU893957 P085A06 Populus petioles cDNA librar... 38 0.45
gb|CA821474.1|CA821474 RSH03D09 two-month-old roots from cl... 38 0.45
gb|CF230163.1|CF230163 PtaC0004F11F1111 Poplar cDNA library... 38 0.45
gb|CK106663.1|CK106663 UB28CPF08.5pR Populus active cambium... 38 0.45
gb|CN517949.1|CN517949 GQ0092.B3_L22 GQ009 Populus trichoca... 38 0.45
gb|CV236368.1|CV236368 WS01223.B21_N15 PT-GT-FL-A-3 Populus... 38 0.45
gb|CV240337.1|CV240337 WS0251.B21_B20 PT-MB-N-A-15 Populus ... 38 0.45
gb|CV241852.1|CV241852 WS02513.B21_G20 PT-MB-N-A-15 Populus... 38 0.45
gb|CV260722.1|CV260722 WS02014.B21_N11 PTxN-IB-N-A-11 Popul... 38 0.45
gb|CV261022.1|CV261022 WS02015.B21_K07 PTxN-IB-N-A-11 Popul... 38 0.45
gb|CV261920.1|CV261920 WS02018.B21_C10 PTxN-IB-N-A-11 Popul... 38 0.45
gb|CV261953.1|CV261953 WS02018.B21_D20 PTxN-IB-N-A-11 Popul... 38 0.45
gb|CV263685.1|CV263685 WS02022.B21_I07 PTxN-IB-N-A-11 Popul... 38 0.45
gb|CV263910.1|CV263910 WS02023.B21_B20 PTxN-IB-N-A-11 Popul... 38 0.45
gb|CV264987.1|CV264987 WS02026.B21_A11 PTxN-IB-N-A-11 Popul... 38 0.45
gb|CV265976.1|CV265976 WS02028.B21_M11 PTxN-IB-N-A-11 Popul... 38 0.45
gb|CV266418.1|CV266418 WS02029.B21_P13 PTxN-IB-N-A-11 Popul... 38 0.45
gb|CV268816.1|CV268816 WS0206.B21_I11 PTxN-IB-N-A-11 Populu... 38 0.45
gb|CV269421.1|CV269421 WS0208.B21_D11 PTxN-IB-N-A-11 Populu... 38 0.45
gb|CV271768.1|CV271768 WS0155.B21_K03 PTxN-IB-A-6 Populus t... 38 0.45
gb|CV271840.1|CV271840 WS0155.B21_N06 PTxN-IB-A-6 Populus t... 38 0.45
gb|CV272312.1|CV272312 WS0157.B21_E11 PTxN-IB-A-6 Populus t... 38 0.45
gb|CV276677.1|CV276677 WS0141.B21_H16 PTxD-IL-A-5 Populus t... 38 0.45
gb|CX657965.1|CX657965 PO01007E08 Poplar SC cDNA library Po... 38 0.45
gb|DT470108.1|DT470108 WS01919.C21_O10 PT-DX-N-A-10 Populus... 38 0.45
gb|DT477700.1|DT477700 WS02520.BR_L15 PT-MB-N-A-15 Populus ... 38 0.45
gb|DT491954.1|DT491954 WS02549.C21_E09 PT-MB-N-A-15 Populus... 38 0.45
gb|DT493078.1|DT493078 WS02553.C21_F03 PT-MB-N-A-15 Populus... 38 0.45
gb|DT495354.1|DT495354 WS01120.BR_D13 PT-P-FL-A-2 Populus t... 38 0.45
gb|DT506517.1|DT506517 WS0189.C21_M16 PTxD-IL-N-A-9 Populus... 38 0.45
gb|DT517639.1|DT517639 WS02434.B21_O03 PTxD-ICC-N-A-14 Popu... 38 0.45
gb|DT521290.1|DT521290 WS02033.B21_O09 PTxN-IB-N-A-11 Popul... 38 0.45
gb|DT525964.1|DT525964 WS02046.C21_M04 PTxN-IB-N-A-11 Popul... 38 0.45
gb|DT526709.1|DT526709 WS02048.C21_M04 PTxN-IB-N-A-11 Popul... 38 0.45
>gb|BU809367.1|BU809367 UL56PH10 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 444
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 289 gctcacaccgattacatctatacccag 315
>gb|BU812281.1|BU812281 UL94TD06 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 393
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 235 gctcacaccgattacatctatacccag 261
>gb|BU816435.1|BU816435 N064F10 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 436
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 272 gctcacaccgattacatctatacccag 298
>gb|BU821826.1|BU821826 UB28CPF08 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 368
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 212 gctcacaccgattacatctatacccag 238
>gb|BU871051.1|BU871051 Q026C10 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 439
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 280 gctcacaccgattacatctatacccag 306
>gb|BU879891.1|BU879891 UM38TG11 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 591
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 416 gctcacaccgattacatctatacccag 442
>gb|BU880669.1|BU880669 UM53TB09 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 500
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 369 gctcacaccgattacatctatacccag 395
>gb|BU885266.1|BU885266 R028G03 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 393
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 279 gctcacaccgattacatctatacccag 305
>gb|BU888723.1|BU888723 P011F07 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 487
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 298 gctcacaccgattacatctatacccag 324
>gb|BU891922.1|BU891922 P057B06 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 454
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 290 gctcacaccgattacatctatacccag 316
>gb|BU893957.1|BU893957 P085A06 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 465
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 299 gctcacaccgattacatctatacccag 325
>gb|CA821474.1|CA821474 RSH03D09 two-month-old roots from clone 'Beaupre' grown for 19 days
under restricted irrigation Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 461
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 308 gctcacaccgattacatctatacccag 334
>gb|CF230163.1|CF230163 PtaC0004F11F1111 Poplar cDNA library from cambial zone Populus alba
x Populus tremula cDNA 5', mRNA sequence
Length = 374
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 259 gctcacaccgattacatctatacccag 285
>gb|CK106663.1|CK106663 UB28CPF08.5pR Populus active cambium cDNA library Populus tremula
cDNA clone UB28CPF08 5', mRNA sequence
Length = 500
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 205 gctcacaccgattacatctatacccag 231
>gb|CN517949.1|CN517949 GQ0092.B3_L22 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_L22 5', mRNA sequence
Length = 517
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 285 gctcacaccgattacatctatacccag 311
>gb|CV236368.1|CV236368 WS01223.B21_N15 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS01223_N15 3', mRNA sequence
Length = 407
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 168 gctcacaccgattacatctatacccag 142
>gb|CV240337.1|CV240337 WS0251.B21_B20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS0251_B20 3', mRNA sequence
Length = 499
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 227 gctcacaccgattacatctatacccag 201
>gb|CV241852.1|CV241852 WS02513.B21_G20 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02513_G20 3', mRNA sequence
Length = 597
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 250 gctcacaccgattacatctatacccag 224
>gb|CV260722.1|CV260722 WS02014.B21_N11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02014_N11 3', mRNA sequence
Length = 416
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 230 gctcacaccgattacatctatacccag 204
>gb|CV261022.1|CV261022 WS02015.B21_K07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02015_K07 3', mRNA sequence
Length = 457
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 183 gctcacaccgattacatctatacccag 157
>gb|CV261920.1|CV261920 WS02018.B21_C10 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02018_C10 3', mRNA sequence
Length = 659
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 388 gctcacaccgattacatctatacccag 362
>gb|CV261953.1|CV261953 WS02018.B21_D20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02018_D20 3', mRNA sequence
Length = 512
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 302 gctcacaccgattacatctatacccag 276
>gb|CV263685.1|CV263685 WS02022.B21_I07 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02022_I07 3', mRNA sequence
Length = 561
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 276 gctcacaccgattacatctatacccag 250
>gb|CV263910.1|CV263910 WS02023.B21_B20 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02023_B20 3', mRNA sequence
Length = 517
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 420 gctcacaccgattacatctatacccag 394
>gb|CV264987.1|CV264987 WS02026.B21_A11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02026_A11 3', mRNA sequence
Length = 465
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 130 gctcacaccgattacatctatacccag 104
>gb|CV265976.1|CV265976 WS02028.B21_M11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02028_M11 3', mRNA sequence
Length = 502
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 228 gctcacaccgattacatctatacccag 202
>gb|CV266418.1|CV266418 WS02029.B21_P13 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02029_P13 3', mRNA sequence
Length = 453
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 181 gctcacaccgattacatctatacccag 155
>gb|CV268816.1|CV268816 WS0206.B21_I11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0206_I11 3', mRNA sequence
Length = 421
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 136 gctcacaccgattacatctatacccag 110
>gb|CV269421.1|CV269421 WS0208.B21_D11 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0208_D11 3', mRNA sequence
Length = 758
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 133 gctcacaccgattacatctatacccag 107
>gb|CV271768.1|CV271768 WS0155.B21_K03 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0155_K03 3', mRNA sequence
Length = 582
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 298 gctcacaccgattacatctatacccag 272
>gb|CV271840.1|CV271840 WS0155.B21_N06 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0155_N06 3', mRNA sequence
Length = 547
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 277 gctcacaccgattacatctatacccag 251
>gb|CV272312.1|CV272312 WS0157.B21_E11 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA
clone WS0157_E11 3', mRNA sequence
Length = 385
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 108 gctcacaccgattacatctatacccag 82
>gb|CV276677.1|CV276677 WS0141.B21_H16 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0141_H16 3', mRNA sequence
Length = 397
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 129 gctcacaccgattacatctatacccag 103
>gb|CX657965.1|CX657965 PO01007E08 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO01007E08 5', mRNA sequence
Length = 532
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 363 gctcacaccgattacatctatacccag 389
>gb|DT470108.1|DT470108 WS01919.C21_O10 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01919_O10 3', mRNA sequence
Length = 526
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 182 gctcacaccgattacatctatacccag 156
>gb|DT477700.1|DT477700 WS02520.BR_L15 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02520_L15 5', mRNA sequence
Length = 539
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 313 gctcacaccgattacatctatacccag 339
>gb|DT491954.1|DT491954 WS02549.C21_E09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02549_E09 3', mRNA sequence
Length = 556
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 281 gctcacaccgattacatctatacccag 255
>gb|DT493078.1|DT493078 WS02553.C21_F03 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02553_F03 3', mRNA sequence
Length = 456
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 184 gctcacaccgattacatctatacccag 158
>gb|DT495354.1|DT495354 WS01120.BR_D13 PT-P-FL-A-2 Populus trichocarpa cDNA clone
WS01120_D13 5', mRNA sequence
Length = 503
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 370 gctcacaccgattacatctatacccag 396
>gb|DT506517.1|DT506517 WS0189.C21_M16 PTxD-IL-N-A-9 Populus trichocarpa x Populus
deltoides cDNA clone WS0189_M16 3', mRNA sequence
Length = 409
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 230 gctcacaccgattacatctatacccag 204
>gb|DT517639.1|DT517639 WS02434.B21_O03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02434_O03 3', mRNA sequence
Length = 547
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 160 gctcacaccgattacatctatacccag 134
>gb|DT521290.1|DT521290 WS02033.B21_O09 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02033_O09 3', mRNA sequence
Length = 484
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 301 gctcacaccgattacatctatacccag 275
>gb|DT525964.1|DT525964 WS02046.C21_M04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02046_M04 3', mRNA sequence
Length = 540
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 187 gctcacaccgattacatctatacccag 161
>gb|DT526709.1|DT526709 WS02048.C21_M04 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02048_M04 3', mRNA sequence
Length = 799
Score = 38.2 bits (19), Expect = 0.45
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 317 gctcacaccgactacatctacacccag 343
||||||||||| |||||||| ||||||
Sbjct: 187 gctcacaccgattacatctatacccag 161
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,391
Number of Sequences: 369679
Number of extensions: 72391
Number of successful extensions: 20594
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20550
Number of HSP's gapped (non-prelim): 44
length of query: 724
length of database: 203,408,664
effective HSP length: 19
effective length of query: 705
effective length of database: 196,384,763
effective search space: 138451257915
effective search space used: 138451257915
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)