BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3345642.2.1
(600 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Librar... 66 2e-009
gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Librar... 66 2e-009
gb|CB176640.1|CB176640 PopSC00063 Poplar SC cDNA library Po... 56 2e-006
gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus... 56 2e-006
gb|BU824298.1|BU824298 UB62BPE10 Populus tremula cambium cD... 44 0.006
gb|CK088726.1|CK088726 A068P23.3pR Hybrid aspen plasmid lib... 44 0.006
gb|CV231975.1|CV231975 WS0196.B21_B22 PT-DX-N-A-10 Populus ... 38 0.37
gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Popul... 38 0.37
gb|CX656255.1|CX656255 PO02051A03 Poplar SC cDNA library Po... 38 0.37
>gb|CA926791.1|CA926791 MTU6CR.P1.B12 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 65.9 bits (33), Expect = 2e-009
Identities = 108/133 (81%)
Strand = Plus / Plus
Query: 257 cattttatggcctgatggagcccctagaccgcagatggcatgtcttgggtctcgggtatg 316
|||||||||| |||| ||||| || || || ||||||||||| || || | || ||||
Sbjct: 377 cattttatggactgactgagccgcttgatcggagatggcatgtgttaggattgggatatg 436
Query: 317 atgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactataatggaaaca 376
|| | |||| ||||| ||||||||||| |||||||| ||| | |||| |||||| ||||
Sbjct: 437 atatgaacattgatgaccgtctgattgacagtgctgcggttattcactttaatgggaaca 496
Query: 377 tgaaaccctggct 389
||||||| |||||
Sbjct: 497 tgaaaccatggct 509
Score = 56.0 bits (28), Expect = 2e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaacatttttgacttgatagcttggaggaagg 166
||||| ||||| ||||||||||| |||||||| ||||| || ||||||||||
Sbjct: 235 tgtggttgggcgtttggaatgaatatttttgatttgattgcatggaggaagg 286
>gb|CA927414.1|CA927414 MTU6CR.P8.G03 Aspen root cDNA Library Populus tremuloides cDNA,
mRNA sequence
Length = 525
Score = 65.9 bits (33), Expect = 2e-009
Identities = 108/133 (81%)
Strand = Plus / Plus
Query: 257 cattttatggcctgatggagcccctagaccgcagatggcatgtcttgggtctcgggtatg 316
|||||||||| |||| ||||| || || || ||||||||||| || || | || ||||
Sbjct: 377 cattttatggactgactgagccgcttgatcggagatggcatgtgttaggattgggatatg 436
Query: 317 atgtagacatagatgatcgtctgattgagagtgctgctgttgtgcactataatggaaaca 376
|| | |||| ||||| ||||||||||| |||||||| ||| | |||| |||||| ||||
Sbjct: 437 atatgaacattgatgaccgtctgattgacagtgctgcggttattcactttaatgggaaca 496
Query: 377 tgaaaccctggct 389
||||||| |||||
Sbjct: 497 tgaaaccatggct 509
Score = 56.0 bits (28), Expect = 2e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaacatttttgacttgatagcttggaggaagg 166
||||| ||||| ||||||||||| |||||||| ||||| || ||||||||||
Sbjct: 235 tgtggttgggcgtttggaatgaatatttttgatttgattgcatggaggaagg 286
>gb|CB176640.1|CB176640 PopSC00063 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PopSC00063, mRNA sequence
Length = 473
Score = 56.0 bits (28), Expect = 2e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 115 tgtggatgggcttttggaatgaacatttttgacttgatagcttggaggaagg 166
||||| ||||| ||||||||||| |||||||| ||||| || ||||||||||
Sbjct: 227 tgtggttgggcgtttggaatgaatatttttgatttgattgcatggaggaagg 278
>gb|CV242604.1|CV242604 WS02515.B21_I09 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_I09 3', mRNA sequence
Length = 904
Score = 56.0 bits (28), Expect = 2e-006
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 115 tgtggatgggcttttggaatgaacatttttgacttgatagcttggaggaagg 166
||||| ||||| |||||||||||| ||||||| ||||| || ||||||||||
Sbjct: 736 tgtggttgggcatttggaatgaacgtttttgatttgattgcatggaggaagg 685
Score = 40.1 bits (20), Expect = 0.094
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 337 ctgattgagagtgctgctgttgtgcactataatggaaacatgaaaccctggctgaa 392
|||||||| |||||||| ||| | |||| ||| || ||||||||||| ||| ||||
Sbjct: 514 ctgattgacagtgctgcagttattcactttaacgggaacatgaaaccatggttgaa 459
>gb|BU824298.1|BU824298 UB62BPE10 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 429
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 364 tataatggaaacatgaaaccctggct 389
|||||||||||||||||||| |||||
Sbjct: 201 tataatggaaacatgaaaccttggct 226
>gb|CK088726.1|CK088726 A068P23.3pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A068P23 3', mRNA sequence
Length = 684
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 364 tataatggaaacatgaaaccctggct 389
|||||||||||||||||||| |||||
Sbjct: 371 tataatggaaacatgaaaccttggct 346
>gb|CV231975.1|CV231975 WS0196.B21_B22 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS0196_B22 3', mRNA sequence
Length = 377
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 367 aatggaaacatgaaaccctggct 389
||||||||||||||||| |||||
Sbjct: 321 aatggaaacatgaaaccttggct 299
>gb|CV257130.1|CV257130 WS0245.B21_M05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0245_M05 3', mRNA sequence
Length = 718
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 367 aatggaaacatgaaaccctggct 389
||||||||||||||||| |||||
Sbjct: 320 aatggaaacatgaaaccatggct 298
>gb|CX656255.1|CX656255 PO02051A03 Poplar SC cDNA library Populus alba x Populus tremula
var. glandulosa cDNA clone PO02051A03 5', mRNA sequence
Length = 297
Score = 38.2 bits (19), Expect = 0.37
Identities = 39/43 (90%), Gaps = 2/43 (4%)
Strand = Plus / Plus
Query: 121 tgggcttttggaatgaacatttttga-cttgatagcttggagg 162
||||||||||| ||||| |||||||| |||||| |||||||||
Sbjct: 62 tgggcttttgggatgaatatttttgatcttgat-gcttggagg 103
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,493
Number of Sequences: 369679
Number of extensions: 70493
Number of successful extensions: 19916
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19893
Number of HSP's gapped (non-prelim): 22
length of query: 600
length of database: 203,408,664
effective HSP length: 19
effective length of query: 581
effective length of database: 196,384,763
effective search space: 114099547303
effective search space used: 114099547303
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)