BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336950.2.1
(645 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DT500038.1|DT500038 PX0011.BR_A12 PT-X-FL-A-1 Populus tr... 56 2e-006
gb|DT474803.1|DT474803 WS0125.BR_A19 PT-GT-FL-A-3 Populus t... 54 7e-006
gb|AF185574.2| Populus tremuloides transcription factor MAG... 40 0.10
gb|CV228716.1|CV228716 WS01911.B21_A06 PT-DX-N-A-10 Populus... 38 0.40
gb|CV252671.1|CV252671 PX0015.B21_J11 PT-X-FL-A-1 Populus t... 38 0.40
gb|CV253129.1|CV253129 PX0019.B21_N17 PT-X-FL-A-1 Populus t... 38 0.40
gb|CV257842.1|CV257842 WS0247.B21_M22 PTxD-ICC-N-A-14 Popul... 38 0.40
gb|DT492192.1|DT492192 WS02549.C21_O13 PT-MB-N-A-15 Populus... 38 0.40
gb|DT500478.1|DT500478 PX0015.BR_J11 PT-X-FL-A-1 Populus tr... 38 0.40
gb|DT500931.1|DT500931 PX0019.BR_N17 PT-X-FL-A-1 Populus tr... 38 0.40
gb|DT514737.1|DT514737 WS02425.B21_K07 PTxD-ICC-N-A-14 Popu... 38 0.40
>gb|DT500038.1|DT500038 PX0011.BR_A12 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0011_A12
5', mRNA sequence
Length = 513
Score = 56.0 bits (28), Expect = 2e-006
Identities = 52/60 (86%)
Strand = Plus / Minus
Query: 75 cctttccttcttctatgttcatgccccaaaaccctgggttgtaaacaccaacaccaccag 134
|||| |||| ||| || |||||||||||||||||||| ||||| | |||||| |||||||
Sbjct: 128 ccttcccttgttcaatattcatgccccaaaaccctggattgtatataccaactccaccag 69
>gb|DT474803.1|DT474803 WS0125.BR_A19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone
WS0125_A19 5', mRNA sequence
Length = 585
Score = 54.0 bits (27), Expect = 7e-006
Identities = 39/43 (90%)
Strand = Plus / Minus
Query: 92 ttcatgccccaaaaccctgggttgtaaacaccaacaccaccag 134
|||||||||||||||||||| ||||| | |||||| |||||||
Sbjct: 580 ttcatgccccaaaaccctggattgtatataccaactccaccag 538
>gb|AF185574.2| Populus tremuloides transcription factor MAGL4 mRNA, complete cds
Length = 1195
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 624 gtcgacgcggccgcgaattc 643
||||||||||||||||||||
Sbjct: 123 gtcgacgcggccgcgaattc 104
>gb|CV228716.1|CV228716 WS01911.B21_A06 PT-DX-N-A-10 Populus trichocarpa cDNA clone
WS01911_A06 3', mRNA sequence
Length = 748
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 462 ctatgcagagcagaaacaa 480
|||||||||||||||||||
Sbjct: 479 ctatgcagagcagaaacaa 497
>gb|CV252671.1|CV252671 PX0015.B21_J11 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0015_J11 3', mRNA sequence
Length = 513
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 462 ctatgcagagcagaaacaa 480
|||||||||||||||||||
Sbjct: 449 ctatgcagagcagaaacaa 467
>gb|CV253129.1|CV253129 PX0019.B21_N17 PT-X-FL-A-1 Populus trichocarpa cDNA clone
PX0019_N17 3', mRNA sequence
Length = 599
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 462 ctatgcagagcagaaacaa 480
|||||||||||||||||||
Sbjct: 344 ctatgcagagcagaaacaa 362
>gb|CV257842.1|CV257842 WS0247.B21_M22 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS0247_M22 3', mRNA sequence
Length = 793
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 276 ctccagcttcaaaccctct 294
|||||||||||||||||||
Sbjct: 482 ctccagcttcaaaccctct 464
>gb|DT492192.1|DT492192 WS02549.C21_O13 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02549_O13 3', mRNA sequence
Length = 864
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 462 ctatgcagagcagaaacaa 480
|||||||||||||||||||
Sbjct: 484 ctatgcagagcagaaacaa 502
>gb|DT500478.1|DT500478 PX0015.BR_J11 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0015_J11
5', mRNA sequence
Length = 483
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 462 ctatgcagagcagaaacaa 480
|||||||||||||||||||
Sbjct: 35 ctatgcagagcagaaacaa 17
>gb|DT500931.1|DT500931 PX0019.BR_N17 PT-X-FL-A-1 Populus trichocarpa cDNA clone PX0019_N17
5', mRNA sequence
Length = 591
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 462 ctatgcagagcagaaacaa 480
|||||||||||||||||||
Sbjct: 247 ctatgcagagcagaaacaa 229
>gb|DT514737.1|DT514737 WS02425.B21_K07 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02425_K07 3', mRNA sequence
Length = 913
Score = 38.2 bits (19), Expect = 0.40
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 462 ctatgcagagcagaaacaa 480
|||||||||||||||||||
Sbjct: 608 ctatgcagagcagaaacaa 626
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 80,094
Number of Sequences: 369679
Number of extensions: 80094
Number of successful extensions: 21822
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21811
Number of HSP's gapped (non-prelim): 11
length of query: 645
length of database: 203,408,664
effective HSP length: 19
effective length of query: 626
effective length of database: 196,384,763
effective search space: 122936861638
effective search space used: 122936861638
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)