BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3230358.2.1
(2136 letters)
Database: Populus_nucl_with_EST.fasta
369,679 sequences; 203,408,664 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK099875.1|CK099875 A087P60.5pR Hybrid aspen plasmid lib... 244 1e-062
gb|AI165643.1|AI165643 A087p60u Hybrid aspen plasmid librar... 192 4e-047
gb|DT486334.1|DT486334 WS02530.B21_L02 PT-MB-N-A-15 Populus... 172 4e-041
gb|CA825083.1|CA825083 R53C06 two-month-old roots from clon... 139 5e-031
gb|CK319228.1|CK319228 X9P08d02 Populus stem seasonal libra... 137 2e-030
gb|BU809323.1|BU809323 UL56PD12 Populus leaf cDNA library P... 119 5e-025
gb|BF299441.1|BF299441 bd13-1 Poplar first strand cDNA Popu... 90 4e-016
gb|DT520921.1|DT520921 WS02448.B21_O17 PTxD-ICC-N-A-14 Popu... 88 2e-015
gb|BU865328.1|BU865328 S052C02 Populus imbibed seed cDNA li... 74 2e-011
gb|CF235604.1|CF235604 PtaJXT0024G7G0713 Poplar cDNA librar... 74 2e-011
gb|BI129264.1|BI129264 G088P19Y Populus cambium cDNA librar... 70 4e-010
gb|CK097231.1|CK097231 UB44DPC03.3pR Populus active cambium... 68 2e-009
gb|BU813515.1|BU813515 N011D05 Populus bark cDNA library Po... 64 2e-008
gb|BU867561.1|BU867561 M101F12 Populus flower cDNA library ... 64 2e-008
gb|BU887461.1|BU887461 R061D06 Populus root cDNA library Po... 64 2e-008
gb|BU891030.1|BU891030 P045A05 Populus petioles cDNA librar... 64 2e-008
gb|BI139155.1|BI139155 F125P19Y Populus flower cDNA library... 60 4e-007
gb|BU810766.1|BU810766 UL76PA02 Populus leaf cDNA library P... 58 1e-006
gb|BU876253.1|BU876253 V018D09 Populus flower cDNA library ... 58 1e-006
gb|BU881845.1|BU881845 UM68TC08 Populus flower cDNA library... 58 1e-006
gb|CA924171.1|CA924171 MTU7CL.P2.E12 Aspen leaf cDNA Librar... 58 1e-006
gb|CA924722.1|CA924722 MTU7CL.P9.C04 Aspen leaf cDNA Librar... 58 1e-006
gb|CA924738.1|CA924738 MTU7CL.P9.D10 Aspen leaf cDNA Librar... 58 1e-006
gb|CN517584.1|CN517584 GQ0092.B3_F16 GQ009 Populus trichoca... 58 1e-006
gb|CN517707.1|CN517707 GQ0092.B3_H24 GQ009 Populus trichoca... 58 1e-006
gb|CN518714.1|CN518714 GQ0104.B3_E09 GQ010 Populus trichoca... 58 1e-006
gb|CV242929.1|CV242929 WS02516.B21.1_G24 PT-MB-N-A-15 Popul... 58 1e-006
gb|CV262273.1|CV262273 WS02019.B21_B16 PTxN-IB-N-A-11 Popul... 58 1e-006
gb|CV267973.1|CV267973 WS0204.B21_D08 PTxN-IB-N-A-11 Populu... 58 1e-006
gb|CV277162.1|CV277162 WS0142.B21_N06 PTxD-IL-A-5 Populus t... 58 1e-006
gb|CX176449.1|CX176449 E01_69-82_09.ab1 leaf inoculated wit... 58 1e-006
gb|CX179688.1|CX179688 B02_45-18_04.ab1 leaf inoculated wit... 58 1e-006
gb|CX183855.1|CX183855 C09_45-17_05.ab1 leaf inoculated wit... 58 1e-006
gb|CX184975.1|CX184975 F12_45-83_12.ab1 leaf inoculated wit... 58 1e-006
gb|CX185076.1|CX185076 E04_45-89_10.ab1 leaf inoculated wit... 58 1e-006
gb|DT508795.1|DT508795 WS02421.BR_P09 PTxD-ICC-N-A-14 Popul... 58 1e-006
gb|DT511032.1|DT511032 WS02429.BR_F24 PTxD-ICC-N-A-14 Popul... 58 1e-006
gb|DT513404.1|DT513404 WS02421.B21_P09 PTxD-ICC-N-A-14 Popu... 58 1e-006
gb|DT515732.1|DT515732 WS02429.B21.1_F24 PTxD-ICC-N-A-14 Po... 56 6e-006
gb|CV242766.1|CV242766 WS02515.B21_P15 PT-MB-N-A-15 Populus... 54 2e-005
gb|CV281344.1|CV281344 WS0181.B21_K19 PTxD-IL-N-A-9 Populus... 52 9e-005
gb|DV464663.1|DV464663 MTUNUL1.P3.C12 NUL Populus fremontii... 52 9e-005
gb|CK102705.1|CK102705 G088P19.5pR Populus tension wood cDN... 48 0.001
gb|BI122603.1|BI122603 I009P82P Populus leaf cDNA library P... 44 0.022
gb|BI126326.1|BI126326 I073P76P Populus leaf cDNA library P... 44 0.022
gb|BU815692.1|BU815692 N045B01 Populus bark cDNA library Po... 44 0.022
gb|BU818675.1|BU818675 UA33CPB10 Populus tremula cambium cD... 44 0.022
gb|BU820720.1|BU820720 UB13CPE02 Populus tremula cambium cD... 44 0.022
gb|BU821827.1|BU821827 UB28CPF09 Populus tremula cambium cD... 44 0.022
gb|BU825409.1|BU825409 UK108TD04 Populus apical shoot cDNA ... 44 0.022
gb|BU831638.1|BU831638 T024A04 Populus apical shoot cDNA li... 44 0.022
gb|BU832655.1|BU832655 T036G02 Populus apical shoot cDNA li... 44 0.022
gb|BU832656.1|BU832656 T036G03 Populus apical shoot cDNA li... 44 0.022
gb|BU865720.1|BU865720 S057F04 Populus imbibed seed cDNA li... 44 0.022
gb|BU869770.1|BU869770 Q004C11 Populus flower cDNA library ... 44 0.022
gb|BU869850.1|BU869850 Q005C11 Populus flower cDNA library ... 44 0.022
gb|BU871334.1|BU871334 Q029D09 Populus flower cDNA library ... 44 0.022
gb|BU871637.1|BU871637 Q032G04 Populus flower cDNA library ... 44 0.022
gb|BU871705.1|BU871705 Q033E03 Populus flower cDNA library ... 44 0.022
gb|BU875747.1|BU875747 V010H04 Populus flower cDNA library ... 44 0.022
gb|BU878000.1|BU878000 V041H05 Populus flower cDNA library ... 44 0.022
gb|BU886025.1|BU886025 R039D12 Populus root cDNA library Po... 44 0.022
gb|BU888490.1|BU888490 P008F10 Populus petioles cDNA librar... 44 0.022
gb|BU888808.1|BU888808 P012G10 Populus petioles cDNA librar... 44 0.022
gb|BU889980.1|BU889980 P029A12 Populus petioles cDNA librar... 44 0.022
gb|BU894217.1|BU894217 X004F01 Populus wood cDNA library Po... 44 0.022
gb|BU894968.1|BU894968 X017E02 Populus wood cDNA library Po... 44 0.022
gb|BU896034.1|BU896034 X034E07 Populus wood cDNA library Po... 44 0.022
gb|BU897332.1|BU897332 X055D01 Populus wood cDNA library Po... 44 0.022
gb|BU898196.1|BU898196 X076D03 Populus wood cDNA library Po... 44 0.022
gb|CA924885.1|CA924885 MTU7TL.P11.A02 Aspen leaf cDNA Libra... 44 0.022
gb|CF231448.1|CF231448 PtaC0021E7E0709 Poplar cDNA library ... 44 0.022
gb|CK096828.1|CK096828 UB28CPF09.3pR Populus active cambium... 44 0.022
gb|CK097383.1|CK097383 UB49DPC06.3pR Populus active cambium... 44 0.022
gb|CK105141.1|CK105141 I073P76.5pR Populus senescing leaves... 44 0.022
gb|CK106227.1|CK106227 UB13CPE02.5pR Populus active cambium... 44 0.022
gb|CN520805.1|CN520805 GQ0107.B3_K24 GQ010 Populus trichoca... 44 0.022
gb|AJ774337.1|AJ774337 AJ774337 Populus euphratica shoot 3-... 44 0.022
gb|AJ775464.1|AJ775464 AJ775464 Populus euphratica shoot 3-... 44 0.022
gb|AJ778897.1|AJ778897 AJ778897 Populus euphratica cambium ... 44 0.022
gb|AJ779852.1|AJ779852 AJ779852 Populus euphratica root 3-6... 44 0.022
gb|DN484001.1|DN484001 PSO205D03 Populus tomentiglandulosa ... 44 0.022
gb|DN494880.1|DN494880 N002A03.5pR Populus bark cDNA librar... 44 0.022
gb|DT474771.1|DT474771 WS0124.BR_P04 PT-GT-FL-A-3 Populus t... 44 0.022
gb|DT511157.1|DT511157 WS02429.BR_L10 PTxD-ICC-N-A-14 Popul... 44 0.022
gb|DT515855.1|DT515855 WS02429.B21.1_L10 PTxD-ICC-N-A-14 Po... 44 0.022
gb|DT526422.1|DT526422 WS02048.C21_A01 PTxN-IB-N-A-11 Popul... 44 0.022
gb|CA927602.1|CA927602 MTU6TR.P10.H07 Aspen root cDNA Libra... 42 0.087
gb|CK090702.1|CK090702 F019P26.3pR Populus flower cDNA libr... 42 0.087
gb|CK115993.1|CK115993 Y018D02 Populus infected leaf substr... 42 0.087
gb|BU822104.1|BU822104 UB32BPF08 Populus tremula cambium cD... 40 0.34
gb|BU886282.1|BU886282 R043C07 Populus root cDNA library Po... 40 0.34
gb|BU895151.1|BU895151 X020A03 Populus wood cDNA library Po... 40 0.34
gb|CK096920.1|CK096920 UB32BPF08.3pR Populus active cambium... 40 0.34
gb|CV248194.1|CV248194 WS0112.B21_M05 PT-P-FL-A-2 Populus t... 40 0.34
gb|CV258447.1|CV258447 WS0249.B21_J02 PTxD-ICC-N-A-14 Popul... 40 0.34
gb|CX659873.1|CX659873 PO01015C06 Poplar SC cDNA library Po... 40 0.34
gb|DT477943.1|DT477943 WS02521.BR_G18 PT-MB-N-A-15 Populus ... 40 0.34
gb|DT524169.1|DT524169 WS02041.C21.1_M10 PTxN-IB-N-A-11 Pop... 40 0.34
>gb|CK099875.1|CK099875 A087P60.5pR Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA clone A087P60 5', mRNA sequence
Length = 618
Score = 244 bits (123), Expect = 1e-062
Identities = 279/331 (84%)
Strand = Plus / Minus
Query: 551 agtcctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatca 610
|||||||| ||||| ||||| | ||| ||||||||||||||||| || || || || ||
Sbjct: 338 agtccttttacccaatcaagtaacatgacatcgtcatcatttgccagccgggcaaggtcg 279
Query: 611 aatgccctctggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtc 670
|| |||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 278 aaagccctctgtccagtaattagctccagaagcatgattccatacccaaaaacatcagtt 219
Query: 671 ttctcagaagacttgccggtagataggtactcgggagcaatgtgcccaattgttccacga 730
|||||||| || || || |||||||||||||| ||||| ||||| || ||||| |||||
Sbjct: 218 ttctcagatgatttaccagtagataggtactctggagcgatgtgtcctattgtaccacgg 159
Query: 731 acagctgttgtgacatgggtatccttgtagtccataagcttggcaagcccgaaatcaccc 790
||||| || |||||||| ||||||||||||||||| | || || ||||| ||||| ||
Sbjct: 158 acagcagtggtgacatgcgtatccttgtagtccatcaattttgccagcccaaaatccccg 99
Query: 791 acaactgcctcgaagtcctcatccaaaagaatatttgcagctttgacatcccgatggatg 850
||||| |||||||| ||||| ||||| | ||||||||||||||| ||||||||||| ||
Sbjct: 98 acaacagcctcgaattcctcgtccaacaaaatatttgcagctttaacatcccgatgaata 39
Query: 851 attttgggatcgcagtgatcatgcaagtaag 881
|| || || || || ||||||||||| ||||
Sbjct: 38 atctttgggtcacaatgatcatgcaaataag 8
Score = 56.0 bits (28), Expect = 6e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 389 tcaccttcgagcatcctcaccacctccgacatctttggacggtccaggggggagccctgc 448
|||||||| ||||| |||||||| ||||||||||| || || |||| |||||||| ||
Sbjct: 500 tcaccttcaagcattctcaccacatccgacatcttaggccgctccatcggggagccttga 441
Query: 449 gtgcagag 456
||||||||
Sbjct: 440 gtgcagag 433
>gb|AI165643.1|AI165643 A087p60u Hybrid aspen plasmid library Populus tremula x Populus
tremuloides cDNA 5', mRNA sequence
Length = 380
Score = 192 bits (97), Expect = 4e-047
Identities = 242/290 (83%), Gaps = 1/290 (0%)
Strand = Plus / Minus
Query: 551 agtcctttcacccagtcaagaagcataacatcgtcatcatttgcaagacgagctagatca 610
|||||||| ||||| ||||| | ||| ||||||||||||||||| || || || || ||
Sbjct: 289 agtccttttacccaatcaagtaacatgacatcgtcatcatttgccagccgggcaaggtcg 230
Query: 611 aatgccctctggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtc 670
|| |||||||| |||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 229 aaagccctctgtccagtaattagctccagaagcatgattccatacccaaaaacatcagtt 170
Query: 671 ttctcagaagacttgccggtagataggtactcgggagcaatgtgcccaattgttccacga 730
|||||||| || || || |||||||||||||| ||||| ||||| || ||||| |||||
Sbjct: 169 ttctcagatgatttaccagtagataggtactctggagcgatgtgtcctattgtaccacg- 111
Query: 731 acagctgttgtgacatgggtatccttgtagtccataagcttggcaagcccgaaatcaccc 790
||||| || |||||||| ||||||||||||| ||| | || | ||||| ||||| ||
Sbjct: 110 acagcagtggtgacatgcgtatccttgtagtncatcaattttgncagcccaaaatccccg 51
Query: 791 acaactgcctcgaagtcctcatccaaaagaatatttgcagctttgacatc 840
||| | ||||||| ||||| ||||| | ||||||||||||||| |||||
Sbjct: 50 acatcancctcgaattcctcgtccaacaaaatatttgcagctttaacatc 1
>gb|DT486334.1|DT486334 WS02530.B21_L02 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02530_L02 3', mRNA sequence
Length = 834
Score = 172 bits (87), Expect = 4e-041
Identities = 201/239 (84%)
Strand = Plus / Plus
Query: 521 accagcatctccaccttcttctccttcaacagtcctttcacccagtcaagaagcataaca 580
||||||||||||| |||||| || || | ||||| |||||||| ||||| | ||| |||
Sbjct: 591 accagcatctccaacttcttatcttttagaagtcccttcacccaatcaagtaacatcaca 650
Query: 581 tcgtcatcatttgcaagacgagctagatcaaatgccctctggccagtaataagctccaga 640
|||||||| |||||||| ||||| |||||||| ||||| || ||||||||||| || |||
Sbjct: 651 tcgtcatcgtttgcaagccgagcaagatcaaaagccctttgtccagtaataagttcaaga 710
Query: 641 agcatgatcccatagccaaaaacatcagtcttctcagaagacttgccggtagataggtac 700
||||||| ||||| |||||||||||||||||||| |||||||| || || |||||||||
Sbjct: 711 agcatgactccatacccaaaaacatcagtcttctctgaagactttcctgttgataggtac 770
Query: 701 tcgggagcaatgtgcccaattgttccacgaacagctgttgtgacatgggtatccttgta 759
||||| || || ||||| ||||| ||||| || || || || ||||| ||||| |||||
Sbjct: 771 tcgggtgctatatgccctattgtgccacgtactgcagtagtaacatgagtatctttgta 829
Score = 44.1 bits (22), Expect = 0.022
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 354 ctttctgccattcgtcccaacgctctgccagcccgtcaccttcgagcatcctcaccacct 413
||||||||||||| ||||| | ||| |||| || || ||||| ||||| || |||||||
Sbjct: 424 ctttctgccattcctcccatctctccgccaatccatccccttcaagcattctgaccacct 483
Query: 414 ccgacatctt 423
| ||||||||
Sbjct: 484 ctgacatctt 493
>gb|CA825083.1|CA825083 R53C06 two-month-old roots from clone 'Beaupre' Populus trichocarpa x
Populus deltoides cDNA 5', mRNA sequence
Length = 590
Score = 139 bits (70), Expect = 5e-031
Identities = 205/250 (82%)
Strand = Plus / Minus
Query: 1058 tgcaccgccatgctaatcatctcaacctctgtttggaactgaagctcaccaccaggtgta 1117
||||| |||||||| ||||| || ||||||||||||||||| | || || ||||||||
Sbjct: 298 tgcacagccatgctgatcatttctacctctgtttggaactgcaattcccctccaggtgtc 239
Query: 1118 cgctcctcttttagtcttttcactgctaccaatgagccatcagcaagccttcctttgtac 1177
||||||||||| |||||||| ||||| ||||||| ||||||||| || | ||| ||||||
Sbjct: 238 cgctcctctttcagtctttttactgccaccaatgtgccatcagccaggcgtcccttgtac 179
Query: 1178 acttttccaaaaccgcctcttcctaaaatgttcttgttactgaaattatcagttgcaact 1237
|| || ||||| || |||| || | |||||||||||| || ||| |||| ||||||||
Sbjct: 178 accttaccaaatccacctcggccaagaatgttcttgttgctaaaactatctgttgcaacc 119
Query: 1238 tgaagctcccgcaatgaaaactttttgagctgaccaagatggacttctggatcctcctcg 1297
| || || ||||| ||| || |||||||||| || | ||||||||||||||| || ||
Sbjct: 118 agtagttctcgcaaagaataccttttgagctgtcccaaatggacttctggatcttcttca 59
Query: 1298 gcaggaacat 1307
||||| ||||
Sbjct: 58 gcaggtacat 49
Score = 105 bits (53), Expect = 7e-021
Identities = 107/125 (85%)
Strand = Plus / Minus
Query: 785 tcacccacaactgcctcgaagtcctcatccaaaagaatatttgcagctttgacatcccga 844
||||| ||||||||||| || ||||||||||| | |||||||||||||| ||||| |||
Sbjct: 571 tcaccaacaactgcctcaaactcctcatccaataatatatttgcagctttcacatcacga 512
Query: 845 tggatgattttgggatcgcagtgatcatgcaagtaagaaagtcctcttgcagatcccagt 904
|| ||||| || || || |||||||||||||| |||||||| || |||||||| |||| |
Sbjct: 511 tgaatgatctttgggtcacagtgatcatgcaaataagaaagaccccttgcagaccccaat 452
Query: 905 gcaat 909
|||||
Sbjct: 451 gcaat 447
>gb|CK319228.1|CK319228 X9P08d02 Populus stem seasonal library Populus deltoides cDNA, mRNA
sequence
Length = 598
Score = 137 bits (69), Expect = 2e-030
Identities = 174/209 (83%)
Strand = Plus / Minus
Query: 521 accagcatctccaccttcttctccttcaacagtcctttcacccagtcaagaagcataaca 580
||||||||||||| |||||| || || | ||||| |||||||| ||||| | ||| |||
Sbjct: 234 accagcatctccaacttcttatcttttagaagtcccttcacccaatcaagtaacattaca 175
Query: 581 tcgtcatcatttgcaagacgagctagatcaaatgccctctggccagtaataagctccaga 640
|| || ||||||||||| ||||| |||||||| |||||||| ||||| ||||| || |||
Sbjct: 174 tcatcgtcatttgcaagccgagcaagatcaaaagccctctgtccagtgataagttcaaga 115
Query: 641 agcatgatcccatagccaaaaacatcagtcttctcagaagacttgccggtagataggtac 700
||||||| ||||| || ||||||||||||||||| |||||||| || || | ||||||
Sbjct: 114 agcatgacaccatacccgaaaacatcagtcttctctgaagactttcctgttgttaggtat 55
Query: 701 tcgggagcaatgtgcccaattgttccacg 729
|| || || || ||||||||||| |||||
Sbjct: 54 tcaggtgctatatgcccaattgtgccacg 26
>gb|BU809323.1|BU809323 UL56PD12 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 418
Score = 119 bits (60), Expect = 5e-025
Identities = 209/259 (80%)
Strand = Plus / Minus
Query: 623 ccagtaataagctccagaagcatgatcccatagccaaaaacatcagtcttctcagaagac 682
||||| ||||| || |||||||||| ||||| || || |||||||||||||| ||||||
Sbjct: 414 ccagtgataagttcgagaagcatgacaccatacccgaanacatcagtcttctctgaagac 355
Query: 683 ttgccggtagataggtactcgggagcaatgtgcccaattgttccacgaacagctgttgtg 742
|| || || |||||||| || || || || ||||||||||| ||||| || || || ||
Sbjct: 354 tttcctgttgataggtattcaggtgctatatgcccaattgtgccacgtactgcagtagta 295
Query: 743 acatgggtatccttgtagtccataagcttggcaagcccgaaatcacccacaactgcctcg 802
||||| ||||| ||||||||||| || || || | ||| ||||| || |||||||| ||
Sbjct: 294 acatgagtatctttgtagtccatgagttttgccaacccaaaatctccaacaactgcttca 235
Query: 803 aagtcctcatccaaaagaatatttgcagctttgacatcccgatggatgattttgggatcg 862
|| |||||||| || | ||||||||||||||| ||||| || || || || || |||||
Sbjct: 234 aattcctcatctaacaaaatatttgcagctttcacatcgcggtgaataatcttaggatca 175
Query: 863 cagtgatcatgcaagtaag 881
|| ||||| ||||| ||||
Sbjct: 174 caatgatcgtgcaaataag 156
>gb|BF299441.1|BF299441 bd13-1 Poplar first strand cDNA Populus trichocarpa x Populus
deltoides cDNA similar to receptor-like kinase, mRNA
sequence
Length = 949
Score = 89.7 bits (45), Expect = 4e-016
Identities = 199/249 (79%), Gaps = 1/249 (0%)
Strand = Plus / Minus
Query: 632 agctccagaagcatgatcccatagccaaaaacatca-gtcttctcagaagacttgccggt 690
||||| ||||||| ||||||| | ||||| |||||| ||||| || || |||| || ||
Sbjct: 443 agctcaagaagcaagatcccaaacccaaacacatcaagtcttttctgatgactgacctgt 384
Query: 691 agataggtactcgggagcaatgtgcccaattgttccacgaacagctgttgtgacatgggt 750
|||| ||||| |||||||| || |||| || |||||||||||||| || |||||||
Sbjct: 383 tgataaatactccggagcaatatgaccaacggtgccacgaacagctgtggtcacatggga 324
Query: 751 atccttgtagtccataagcttggcaagcccgaaatcacccacaactgcctcgaagtcctc 810
||| ||| |||| |||||| || ||||| ||||| || || |||||||| ||||||||
Sbjct: 323 atctctgtgatccaaaagctttgccagcccaaaatctccaactactgcctcaaagtcctc 264
Query: 811 atccaaaagaatatttgcagctttgacatcccgatggatgattttgggatcgcagtgatc 870
||||| | ||| || || |||||||| || || || || |||||||| ||||| || ||
Sbjct: 263 gtccaacaaaatgttggctgctttgacgtcgcggtgaataattttggggtcgcattgctc 204
Query: 871 atgcaagta 879
|||||||||
Sbjct: 203 atgcaagta 195
>gb|DT520921.1|DT520921 WS02448.B21_O17 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02448_O17 3', mRNA sequence
Length = 495
Score = 87.7 bits (44), Expect = 2e-015
Identities = 101/120 (84%)
Strand = Plus / Plus
Query: 1889 gcatttccaaggtcaactctgataacactgttatcgttgttacacgtaacatggaaccat 1948
||||||||||| ||||||| || ||||| ||||| |||||||| || ||||| ||||||
Sbjct: 218 gcatttccaagatcaactcgtatgacactattatcattgttacatgtgacatgaaaccat 277
Query: 1949 gtacatggattaacaagagtgggatcccaactctgcaagacattgttagcatctttcaag 2008
|| || || || ||||| || |||||||||||||||| ||||||||| | ||| ||||||
Sbjct: 278 gtgcaagggttgacaagggtaggatcccaactctgcaggacattgtttggatcattcaag 337
>gb|BU865328.1|BU865328 S052C02 Populus imbibed seed cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 230
Score = 73.8 bits (37), Expect = 2e-011
Identities = 176/221 (79%), Gaps = 1/221 (0%)
Strand = Plus / Minus
Query: 638 agaagcatgatcccatagccaaaaacatcagtcttctcagaagacttgccggtagatagg 697
||||||| ||||||| | ||||| ||||||||||| || || |||| || || ||||
Sbjct: 227 agaagcaagatcccaaacccaaacacatcagtcttttccgatgactgacctgttgataaa 168
Query: 698 tactcgggagcaatgtgcccaattgttccacgaacagctgttgtgacatgggtatccttg 757
||||| |||| ||| || || | || ||||||||||||| || ||||||| ||| ||
Sbjct: 167 tactccggagaaatatgaccgacggtgccacgaacagctg-ggtcacatgggaatctctg 109
Query: 758 tagtccataagcttggcaagcccgaaatcacccacaactgcctcgaagtcctcatccaaa 817
| |||| |||||| || | ||| ||||| || ||||||||||| ||||||||||||||
Sbjct: 108 tgatccaaaagctttgccaacccaaaatctccaacaactgcctcaaagtcctcatccaac 49
Query: 818 agaatatttgcagctttgacatcccgatggatgattttggg 858
| ||| || || ||||||||||| ||||| || ||||||||
Sbjct: 48 aaaatgttggctgctttgacatcacgatgaataattttggg 8
>gb|CF235604.1|CF235604 PtaJXT0024G7G0713 Poplar cDNA library from young tension xylem
Populus alba x Populus tremula cDNA 5', mRNA sequence
Length = 746
Score = 73.8 bits (37), Expect = 2e-011
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 1889 gcatttccaaggtcaactctgataacactgttatcgttgttacacgtaacatggaaccat 1948
||||||||||| |||||||| |||||||| ||||| |||||||| || ||||| |||||
Sbjct: 93 gcatttccaagatcaactcttataacactattatcattgttacaggtgacatgaaaccac 34
Query: 1949 gtacatggattaacaagagtgggatccca 1977
|| ||||| || ||||| || ||||||||
Sbjct: 33 gtgcatgggttgacaagggtaggatccca 5
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 1365 cagcaaacaccaatgctgcaccagcagcaacacctccagctattgctccagtg 1417
||||||||| || ||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 617 cagcaaacagtaaggctgcaccagctgcaactcctccagcaattgctccagtg 565
Score = 58.0 bits (29), Expect = 1e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 1532 ttgttggcaaaacttataggggtgaagagtgaaaaggagccagtcgatgggacttgtcct 1591
||||| ||||||||||| || ||||| ||||| ||||| ||| | ||| ||| |||
Sbjct: 450 ttgttagcaaaacttatgggagtgaatagtgagaaggaaccattatctggaactactcca 391
Query: 1592 gagaggttgttgttcgagagatccagtacttggagagtggagatattggtcaa 1644
||||||| |||||| || |||||||||||||| |||| |||||||| |||||
Sbjct: 390 gagaggtggttgtttgaaagatccagtacttgaagagctgagatattagtcaa 338
>gb|BI129264.1|BI129264 G088P19Y Populus cambium cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 430
Score = 69.9 bits (35), Expect = 4e-010
Identities = 113/139 (81%)
Strand = Plus / Minus
Query: 611 aatgccctctggccagtaataagctccagaagcatgatcccatagccaaaaacatcagtc 670
|||||| |||| || || || ||||| ||||||| ||||||| | ||||| |||||||||
Sbjct: 157 aatgccttctgacctgtgattagctcaagaagcaagatcccaaacccaaacacatcagtc 98
Query: 671 ttctcagaagacttgccggtagataggtactcgggagcaatgtgcccaattgttccacga 730
|| || || |||| || || |||| ||||| |||||||| || ||||| || ||||||
Sbjct: 97 ttttctgatgactgacctgttgataaatactctggagcaatatgaccaatggtgccacga 38
Query: 731 acagctgttgtgacatggg 749
|||||||| || |||||||
Sbjct: 37 acagctgtagtcacatggg 19
>gb|CK097231.1|CK097231 UB44DPC03.3pR Populus active cambium cDNA library Populus tremula
cDNA clone UB44DPC03 3', mRNA sequence
Length = 671
Score = 67.9 bits (34), Expect = 2e-009
Identities = 127/158 (80%)
Strand = Plus / Plus
Query: 510 gatctgggtccaccagcatctccaccttcttctccttcaacagtcctttcacccagtcaa 569
||||||| || |||||||| | || ||||||||| || | ||| |||| ||||| || |
Sbjct: 339 gatctggatcaaccagcatatgcaacttcttctcttttagaagtgctttgacccaatcga 398
Query: 570 gaagcataacatcgtcatcatttgcaagacgagctagatcaaatgccctctggccagtaa 629
| |||||| |||| |||| ||| ||||| | || |||||||||||| ||| ||||| |
Sbjct: 399 gtagcatagcatcatcatgattggcaagccttgcatgatcaaatgcccgctgtccagtga 458
Query: 630 taagctccagaagcatgatcccatagccaaaaacatca 667
||||||| | |||||||| ||||| ||||||||||||
Sbjct: 459 taagctctaagagcatgattccataaccaaaaacatca 496
Score = 44.1 bits (22), Expect = 0.022
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 713 tgcccaattgttccacgaacagctgt-tgtgacatgggtatccttgtagtccat 765
|||||||| |||||||| ||||| | ||||||||||||||| |||| ||||||
Sbjct: 543 tgcccaatggttccacgtacagcaatctgtgacatgggtatctttgtggtccat 596
>gb|BU813515.1|BU813515 N011D05 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 330
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 1934 gtaacatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 213 gtaacatggaaccaggtgcagggattgacaagagttgggtcccaactctgcaacacattg 154
>gb|BU867561.1|BU867561 M101F12 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 551
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 1934 gtaacatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 131 gtaacatggaaccaggtgcagggattgacaagagtcgggtcccaactctgcaacacattg 72
>gb|BU887461.1|BU887461 R061D06 Populus root cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 592
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 1934 gtaacatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 172 gtaacatggaaccaggtgcagggattgacaagagttgggtcccaactctgcaacacattg 113
>gb|BU891030.1|BU891030 P045A05 Populus petioles cDNA library Populus tremula cDNA 5 prime,
mRNA sequence
Length = 615
Score = 63.9 bits (32), Expect = 2e-008
Identities = 53/60 (88%)
Strand = Plus / Minus
Query: 1934 gtaacatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
|||||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 226 gtaacatggaaccaggtgcagggattgacaagagttgggtcccaactctgcaacacattg 167
>gb|BI139155.1|BI139155 F125P19Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA
sequence
Length = 358
Score = 60.0 bits (30), Expect = 4e-007
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 632 agctccagaagcatgatcccatagccaaaaacatcagtcttctcagaagacttgccggta 691
||||| ||||||| ||||||| | ||||| ||||||||||| || || |||| || ||
Sbjct: 187 agctcaagaagcaagatcccaaacccaaacacatcagtcttttctgatgactgacctgtc 246
Query: 692 gataggtactcgggagcaatgtgcccaattgttccacgaacagctgttgtgacatggg 749
|||| ||||| |||||||| || |||| || |||||||||||||| || |||||||
Sbjct: 247 gataaatactccggagcaatatgaccaacggtgccacgaacagctgtggtcacatggg 304
>gb|BU810766.1|BU810766 UL76PA02 Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 471
Score = 58.0 bits (29), Expect = 1e-006
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 626 gtaataagctccagaagcatgatcccatagccaaaaacatcagtc 670
|||| ||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 113 gtaacaagctccagaagcattatcccatatccaaagacatcagtc 69
>gb|BU876253.1|BU876253 V018D09 Populus flower cDNA library Populus trichocarpa cDNA 5 prime,
mRNA sequence
Length = 610
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 187 acatggaaccaggtgcagggattgacaagagtcgggtcccaactctgcaacacattg 131
>gb|BU881845.1|BU881845 UM68TC08 Populus flower cDNA library Populus trichocarpa cDNA 5
prime, mRNA sequence
Length = 577
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 189 acatggaaccaggtgcagggattgacaagagtcgggtcccaactctgcaacacattg 133
>gb|CA924171.1|CA924171 MTU7CL.P2.E12 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 309
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 210 acatggaaccaggtgcagggattgacaagagttgggtcccaactctgcaacacattg 154
>gb|CA924722.1|CA924722 MTU7CL.P9.C04 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 309
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 210 acatggaaccaggtgcagggattgacaagagttgggtcccaactctgcaacacattg 154
>gb|CA924738.1|CA924738 MTU7CL.P9.D10 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA
sequence
Length = 309
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 210 acatggaaccaggtgcagggattgacaagagttgggtcccaactctgcaacacattg 154
>gb|CN517584.1|CN517584 GQ0092.B3_F16 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_F16 5', mRNA sequence
Length = 543
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 326 acatggaaccaggtgcagggattgacaagagttgggtcccaactctgcaacacattg 270
>gb|CN517707.1|CN517707 GQ0092.B3_H24 GQ009 Populus trichocarpa x Populus deltoides cDNA
clone GQ0092_H24 5', mRNA sequence
Length = 490
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 305 acatggaaccaggtgcagggattgacaagagtcgggtcccaactctgcaacacattg 249
>gb|CN518714.1|CN518714 GQ0104.B3_E09 GQ010 Populus trichocarpa x Populus deltoides cDNA
clone GQ0104_E09 5', mRNA sequence
Length = 731
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 151 acatggaaccaggtgcagggattgacaagagttgggtcccaactctgcaacacattg 95
>gb|CV242929.1|CV242929 WS02516.B21.1_G24 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02516_G24 3', mRNA sequence
Length = 882
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 826 acatggaaccaggtgcagggattgacaagagtcgggtcccaactctgcaacacattg 882
>gb|CV262273.1|CV262273 WS02019.B21_B16 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS02019_B16 3', mRNA sequence
Length = 791
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 632 acatggaaccaggtgcagggattgacaagagtcgggtcccaactctgcaacacattg 688
>gb|CV267973.1|CV267973 WS0204.B21_D08 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra
cDNA clone WS0204_D08 3', mRNA sequence
Length = 842
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 669 acatggaaccaggtgcagggattgacaagagtcgggtcccaactctgcaacacattg 725
>gb|CV277162.1|CV277162 WS0142.B21_N06 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides
cDNA clone WS0142_N06 3', mRNA sequence
Length = 855
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 733 acatggaaccaggtgcagggattgacaagagtcgggtcccaactctgcaacacattg 789
>gb|CX176449.1|CX176449 E01_69-82_09.ab1 leaf inoculated with Marssonia pathogen of Populus
deltoides Populus deltoides cDNA, mRNA sequence
Length = 679
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 142 acatggaaccaggtgcagggattgacaagagttgggtcccaactctgcaacacattg 86
>gb|CX179688.1|CX179688 B02_45-18_04.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 596
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 109 acatggaaccaggtgcagggattgacaagagttgggtcccaactctgcaacacattg 53
>gb|CX183855.1|CX183855 C09_45-17_05.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 686
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 199 acatggaaccaggtgcagggattgacaagagttgggtcccaactctgcaacacattg 143
>gb|CX184975.1|CX184975 F12_45-83_12.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 690
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 212 acatggaaccaggtgcagggattgacaagagttgggtcccaactctgcaacacattg 156
>gb|CX185076.1|CX185076 E04_45-89_10.ab1 leaf inoculated with Marssonia pathogen of Populus
euramericana Populus x canadensis cDNA, mRNA sequence
Length = 728
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 128 acatggaaccaggtgcagggattgacaagagttgggtcccaactctgcaacacattg 72
>gb|DT508795.1|DT508795 WS02421.BR_P09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_P09 5', mRNA sequence
Length = 863
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 386 acatggaaccaggtgcagggattgacaagagtcgggtcccaactctgcaacacattg 330
>gb|DT511032.1|DT511032 WS02429.BR_F24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_F24 5', mRNA sequence
Length = 958
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 161 acatggaaccaggtgcagggattgacaagagtcgggtcccaactctgcaacacattg 105
>gb|DT513404.1|DT513404 WS02421.B21_P09 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02421_P09 3', mRNA sequence
Length = 912
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| || |||||||||||||| ||||||
Sbjct: 820 acatggaaccaggtgcagggattgacaagagtcgggtcccaactctgcaacacattg 876
>gb|DT515732.1|DT515732 WS02429.B21.1_F24 PTxD-ICC-N-A-14 Populus trichocarpa x Populus
deltoides cDNA clone WS02429_F24 3', mRNA sequence
Length = 859
Score = 56.0 bits (28), Expect = 6e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaagacatt 1992
||||||||||| || || ||||| |||||||| || |||||||||||||| |||||
Sbjct: 804 acatggaaccaggtgcagggattgacaagagtcgggtcccaactctgcaacacatt 859
>gb|CV242766.1|CV242766 WS02515.B21_P15 PT-MB-N-A-15 Populus trichocarpa cDNA clone
WS02515_P15 3', mRNA sequence
Length = 717
Score = 54.0 bits (27), Expect = 2e-005
Identities = 87/107 (81%)
Strand = Plus / Plus
Query: 632 agctccagaagcatgatcccatagccaaaaacatcagtcttctcagaagacttgccggta 691
||||| ||||||| ||||||| | ||||| ||||||||||| || || |||| || ||
Sbjct: 609 agctcaagaagcaagatcccaaacccaaacacatcagtcttttctgatgactgacctgtt 668
Query: 692 gataggtactcgggagcaatgtgcccaattgttccacgaacagctgt 738
|||| ||||| |||||||| || |||| || ||||||||||||||
Sbjct: 669 gataaatactccggagcaatatgaccaacggtgccacgaacagctgt 715
>gb|CV281344.1|CV281344 WS0181.B21_K19 PTxD-IL-N-A-9 Populus trichocarpa x Populus deltoides
cDNA clone WS0181_K19 3', mRNA sequence
Length = 885
Score = 52.0 bits (26), Expect = 9e-005
Identities = 51/58 (87%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 1937 acatggaaccatgtacatggattaacaagagt-gggatcccaactctgcaagacattg 1993
||||||||||| || || ||||| |||||||| ||| |||||||||||||| ||||||
Sbjct: 826 acatggaaccaggtgcagggattgacaagagtcggggtcccaactctgcaacacattg 883
>gb|DV464663.1|DV464663 MTUNUL1.P3.C12 NUL Populus fremontii x Populus angustifolia cDNA,
mRNA sequence
Length = 605
Score = 52.0 bits (26), Expect = 9e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 1934 gtaacatggaaccatgtacatggattaacaagagtgggatcccaactctg 1983
|||||||| ||||| || || ||||| |||||||| ||||||||||||||
Sbjct: 412 gtaacatgaaaccaggtgcagggattgacaagagtaggatcccaactctg 363
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1805 ccacttatgttgttgctgtaaagctccaaatattg 1839
||||||||||| ||||||||||| ||||| |||||
Sbjct: 541 ccacttatgttattgctgtaaagttccaagtattg 507
>gb|CK102705.1|CK102705 G088P19.5pR Populus tension wood cDNA library Populus tremula x
Populus tremuloides cDNA clone G088P19 5', mRNA sequence
Length = 211
Score = 48.1 bits (24), Expect = 0.001
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 698 tactcgggagcaatgtgcccaattgttccacgaacagctgttgtgacatggg 749
||||| |||||||| || ||||| || |||||||||||||| || |||||||
Sbjct: 55 tactctggagcaatatgaccaatggtgccacgaacagctgtagtcacatggg 4
>gb|BI122603.1|BI122603 I009P82P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 293
Score = 44.1 bits (22), Expect = 0.022
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaa 1986
||||||||||| || || ||||| ||||||| || ||||||||||||||
Sbjct: 179 acatggaaccaggtgcagggattgacaagagctgggtcccaactctgcaa 130
>gb|BI126326.1|BI126326 I073P76P Populus leaf cDNA library Populus tremula x Populus
tremuloides cDNA, mRNA sequence
Length = 535
Score = 44.1 bits (22), Expect = 0.022
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaa 1986
||||||||||| || || ||||| ||||||| || ||||||||||||||
Sbjct: 197 acatggaaccaggtgcagggattgacaagagctgggtcccaactctgcaa 148
>gb|BU815692.1|BU815692 N045B01 Populus bark cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 566
Score = 44.1 bits (22), Expect = 0.022
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaa 1986
||||||||||| || || ||||| ||||||| || ||||||||||||||
Sbjct: 175 acatggaaccaggtgcagggattgacaagagctgggtcccaactctgcaa 126
>gb|BU818675.1|BU818675 UA33CPB10 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 340
Score = 44.1 bits (22), Expect = 0.022
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1943 aaccatgtacatggattaacaagagtgggatcccaactctgcaagacatt 1992
||||| ||||| || ||||||||||| |||||||| ||||| | ||||||
Sbjct: 256 aaccaagtacaagggttaacaagagtcggatcccagctctggaggacatt 207
>gb|BU820720.1|BU820720 UB13CPE02 Populus tremula cambium cDNA library Populus tremula cDNA 5
prime, mRNA sequence
Length = 424
Score = 44.1 bits (22), Expect = 0.022
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1943 aaccatgtacatggattaacaagagtgggatcccaactctgcaagacatt 1992
||||| ||||| || ||||||||||| |||||||| ||||| | ||||||
Sbjct: 255 aaccaagtacaagggttaacaagagtcggatcccagctctggaggacatt 206
>gb|BU821827.1|BU821827 UB28CPF09 Populus tremula cambium cDNA library Populus tremula cDNA
5 prime, mRNA sequence
Length = 417
Score = 44.1 bits (22), Expect = 0.022
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 656 ccaaaaacatcagtcttctcagaagacttgccggtagataggtactcgggagcaatgtgc 715
||||||||||| || |||||||| |||| ||| || ||||| ||||| || || ||||||
Sbjct: 380 ccaaaaacatctgttttctcagaggactggcctgttgatagatactcaggggctatgtgc 321
Query: 716 cc 717
||
Sbjct: 320 cc 319
>gb|BU825409.1|BU825409 UK108TD04 Populus apical shoot cDNA library Populus tremula x Populus
tremuloides cDNA 5 prime, mRNA sequence
Length = 531
Score = 44.1 bits (22), Expect = 0.022
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 1937 acatggaaccatgtacatggattaacaagagtgggatcccaactctgcaa 1986
||||||||||| || || ||||| ||||||| || ||||||||||||||
Sbjct: 384 acatggaaccaggtgcagggattgacaagagctgggtcccaactctgcaa 335
Database: Populus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:49 PM
Number of letters in database: 203,408,664
Number of sequences in database: 369,679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 256,028
Number of Sequences: 369679
Number of extensions: 256028
Number of successful extensions: 71821
Number of sequences better than 0.5: 100
Number of HSP's better than 0.5 without gapping: 99
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 71650
Number of HSP's gapped (non-prelim): 168
length of query: 2136
length of database: 203,408,664
effective HSP length: 20
effective length of query: 2116
effective length of database: 196,015,084
effective search space: 414767917744
effective search space used: 414767917744
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)